Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 C 1.52999 * 109.47067 * 119.99782 * 2 1 3 5 5 C 1.53006 * 109.46972 * 64.99828 * 4 2 1 6 6 C 1.52997 * 109.47065 * 184.95249 * 5 4 2 7 7 H 1.08999 * 109.70120 * 61.31197 * 6 5 4 8 8 C 1.52760 * 109.51197 * 301.19392 * 6 5 4 9 9 C 1.53039 * 109.38038 * 185.70401 * 8 6 5 10 10 C 1.53043 * 109.53894 * 61.24176 * 9 8 6 11 11 C 1.53193 * 109.31287 * 298.63186 * 10 9 8 12 12 N 1.46927 * 109.58461 * 181.66515 * 6 5 4 13 13 C 1.34777 * 120.63298 * 353.41794 * 12 6 5 14 14 O 1.21279 * 119.99493 * 354.19141 * 13 12 6 15 15 C 1.50697 * 120.00168 * 174.18751 * 13 12 6 16 16 C 1.52995 * 109.47327 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47327 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00279 * 179.72193 * 17 16 15 20 20 N 1.31520 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46865 * 120.00256 * 21 19 17 24 24 H 1.48500 * 109.47184 * 240.00425 * 21 19 17 25 25 H 1.09005 * 109.46908 * 299.99868 * 1 2 3 26 26 H 1.09002 * 109.47127 * 59.99643 * 1 2 3 27 27 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46590 * 240.00044 * 2 1 3 29 29 H 1.08997 * 109.46440 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47024 * 300.00036 * 3 2 1 31 31 H 1.09001 * 109.46751 * 60.00379 * 3 2 1 32 32 H 1.09003 * 109.47320 * 305.00344 * 4 2 1 33 33 H 1.08996 * 109.47304 * 184.99862 * 4 2 1 34 34 H 1.09002 * 109.46667 * 64.95839 * 5 4 2 35 35 H 1.08999 * 109.47177 * 304.95851 * 5 4 2 36 36 H 1.08998 * 109.56250 * 65.67093 * 8 6 5 37 37 H 1.09001 * 109.36084 * 305.61427 * 8 6 5 38 38 H 1.09002 * 109.46441 * 301.21835 * 9 8 6 39 39 H 1.09006 * 109.44905 * 181.25200 * 9 8 6 40 40 H 1.09004 * 109.49618 * 178.67916 * 10 9 8 41 41 H 1.08998 * 109.49733 * 58.58498 * 10 9 8 42 42 H 1.08999 * 109.58505 * 294.85184 * 11 10 9 43 43 H 1.08998 * 109.58689 * 174.42480 * 11 10 9 44 44 H 1.09000 * 109.47067 * 59.99939 * 15 13 12 45 45 H 1.09004 * 109.47019 * 300.00829 * 15 13 12 46 46 H 1.09003 * 109.46887 * 60.00188 * 16 15 13 47 47 H 1.08999 * 109.46942 * 300.00004 * 16 15 13 48 48 H 0.96992 * 120.00522 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.0363 -2.8890 2.4914 7 1 1.5155 -2.4259 3.3295 8 6 3.5446 -2.7585 2.6956 9 6 3.9633 -3.5722 3.9222 10 6 3.6310 -5.0487 3.6948 11 6 2.1188 -5.2042 3.5047 12 7 1.6847 -4.3138 2.4196 13 6 0.9819 -4.7959 1.3755 14 8 0.5431 -4.0367 0.5376 15 6 0.7415 -6.2782 1.2491 16 6 -0.0749 -6.5565 -0.0146 17 6 -0.3149 -8.0389 -0.1413 18 1 0.0756 -8.7148 0.6051 19 6 -1.0381 -8.5316 -1.2067 20 7 -1.5182 -7.7080 -2.1127 21 14 -1.3349 -10.3691 -1.3642 22 1 -0.6944 -11.0734 -0.2245 23 1 -2.7954 -10.6373 -1.3535 24 1 -0.7512 -10.8573 -2.6394 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.1402 -2.6763 0.3502 35 1 0.5561 -2.2707 1.0535 36 1 3.8028 -1.7106 2.8486 37 1 4.0626 -3.1364 1.8142 38 1 3.4264 -3.2099 4.7990 39 1 5.0359 -3.4619 4.0821 40 1 3.9508 -5.6309 4.5591 41 1 4.1482 -5.4050 2.8040 42 1 1.6049 -4.9336 4.4271 43 1 1.8876 -6.2371 3.2446 44 1 0.1933 -6.6331 2.1218 45 1 1.6979 -6.7973 1.1851 46 1 0.4737 -6.2018 -0.8871 47 1 -1.0313 -6.0375 0.0491 48 1 -2.0267 -8.0545 -2.8624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360366244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -84.709303 kcal Electronic energy + Delta-G solvation = -23233.348892 eV Core-core repulsion = 20093.267417 eV Total energy + Delta-G solvation = -3140.081475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54600 -38.56125 -37.62080 -35.64577 -34.18993 -33.58420 -32.57461 -29.63959 -28.05735 -27.98190 -25.94573 -25.03916 -23.76181 -22.16903 -21.54066 -20.84976 -19.72486 -18.66554 -17.44174 -16.92559 -16.61078 -16.37635 -16.20253 -15.49519 -15.31400 -15.02863 -14.90044 -14.43917 -14.40003 -14.26125 -13.98005 -13.80294 -13.62639 -13.18239 -13.10606 -12.86686 -12.79634 -12.69613 -12.44359 -12.32926 -12.00199 -11.94351 -11.87298 -11.69366 -11.57720 -11.55659 -11.46835 -11.29526 -11.24594 -11.17789 -10.58547 -9.83681 -9.45900 -8.18845 -6.33054 1.40873 1.42488 1.55769 1.75282 2.10773 2.42470 3.14050 3.60146 3.86470 3.92550 3.99680 4.04591 4.10756 4.11417 4.19358 4.34176 4.41064 4.49786 4.50344 4.51817 4.68142 4.71017 4.75047 4.79661 4.84383 4.91603 4.95380 5.00177 5.01999 5.04446 5.10722 5.15370 5.16510 5.23541 5.30573 5.34532 5.40626 5.47637 5.49014 5.56409 5.61653 5.62923 5.83182 5.89176 6.17284 6.51449 6.85743 7.36088 7.39294 8.94006 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.004363 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.557764 B = 6415.941386 C = 8009.536330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.106 4.106 6 C 0.144 3.856 7 H 0.079 0.921 8 C -0.126 4.126 9 C -0.115 4.115 10 C -0.132 4.132 11 C 0.098 3.902 12 N -0.613 5.613 13 C 0.506 3.494 14 O -0.570 6.570 15 C -0.118 4.118 16 C 0.047 3.953 17 C -0.542 4.542 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.094 0.906 46 H -0.021 1.021 47 H -0.019 1.019 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 12.907 15.414 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.196 4.196 4 C -0.147 4.147 5 C -0.144 4.144 6 C 0.042 3.958 7 H 0.096 0.904 8 C -0.164 4.164 9 C -0.152 4.152 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.347 5.347 13 C 0.296 3.704 14 O -0.449 6.449 15 C -0.157 4.157 16 C 0.009 3.991 17 C -0.580 4.580 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.176 1.176 23 H -0.205 1.205 24 H -0.206 1.206 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.112 0.888 46 H -0.002 1.002 47 H 0.000 1.000 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.215 13.312 14.847 23.385 hybrid contribution -0.632 -0.938 -0.964 1.486 sum 11.583 12.374 13.883 21.909 Atomic orbital electron populations 1.21862 0.96027 1.00737 1.01828 1.21082 0.95493 0.97076 0.98064 1.21781 1.01162 0.94488 1.02141 1.21758 1.01092 0.94048 0.97840 1.21995 1.02270 0.94701 0.95413 1.21321 0.96394 0.79883 0.98249 0.90358 1.21938 0.93587 1.01975 0.98910 1.21525 1.02165 0.94159 0.97381 1.21926 0.94329 0.97948 1.02834 1.22031 0.96173 0.94602 0.89607 1.48328 1.54434 1.09743 1.22168 1.21258 0.76989 0.91554 0.80558 1.90689 1.51605 1.59253 1.43399 1.21646 1.02153 0.91054 1.00888 1.18649 0.93353 0.95292 0.91795 1.21732 1.33970 0.93171 1.09136 0.90794 1.26133 0.95286 1.03608 0.95327 1.70187 1.37080 1.37072 1.13419 0.85277 0.77923 0.78535 0.78543 1.17590 1.20542 1.20590 0.91757 0.92788 0.94853 0.93492 0.92017 0.92721 0.91745 0.90921 0.90862 0.95087 0.91544 0.88838 0.93415 0.90497 0.90212 0.88243 0.92844 0.89612 0.89332 0.88476 0.88766 1.00209 1.00017 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.96 71.98 0.64 -3.24 16 2 C -0.10 -2.38 2.92 -10.79 -0.03 -2.41 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C -0.11 -2.49 4.15 30.60 0.13 -2.37 16 5 C -0.11 -3.30 3.04 30.60 0.09 -3.20 16 6 C 0.14 3.68 3.02 44.83 0.14 3.81 16 7 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 8 C -0.13 -2.42 4.79 30.53 0.15 -2.27 16 9 C -0.11 -1.66 5.89 30.62 0.18 -1.48 16 10 C -0.13 -2.17 6.08 30.67 0.19 -1.98 16 11 C 0.10 2.06 6.35 86.36 0.55 2.61 16 12 N -0.61 -18.19 2.98 -795.83 -2.37 -20.56 16 13 C 0.51 20.60 7.53 87.66 0.66 21.26 16 14 O -0.57 -27.95 11.54 -3.03 -0.03 -27.99 16 15 C -0.12 -4.98 3.99 29.85 0.12 -4.86 16 16 C 0.05 2.68 4.26 29.85 0.13 2.81 16 17 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 20 N -0.94 -60.41 13.29 21.45 0.28 -60.12 16 21 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 22 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.09 6.46 -2.39 -0.02 1.08 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.43 6.82 -2.39 -0.02 1.41 16 34 H 0.03 1.17 7.26 -2.39 -0.02 1.15 16 35 H 0.07 2.55 4.42 -2.39 -0.01 2.54 16 36 H 0.09 1.42 6.85 -2.39 -0.02 1.40 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.92 5.93 -2.39 -0.01 1.91 16 44 H 0.10 3.67 7.72 -2.39 -0.02 3.65 16 45 H 0.09 3.62 7.92 -2.38 -0.02 3.60 16 46 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 47 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 48 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -75.37 363.01 5.09 -70.28 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.89 Total: 15.81 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.29 Total: -24.36 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.09 Total: -80.68 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.03 Total: -27.99 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -75.37 5.09 -70.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360366244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.430 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds