Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47334 * 120.00028 * 2 1 3 5 5 C 1.53006 * 109.46946 * 65.00075 * 4 2 1 6 6 C 1.52991 * 109.47038 * 184.72785 * 5 4 2 7 7 H 1.09000 * 109.70609 * 298.45397 * 6 5 4 8 8 C 1.53199 * 109.58683 * 58.80677 * 6 5 4 9 9 C 1.53043 * 109.33692 * 174.40341 * 8 6 5 10 10 C 1.53034 * 109.54327 * 298.68518 * 9 8 6 11 11 C 1.53192 * 109.33754 * 61.31805 * 10 9 8 12 12 N 1.46925 * 109.58687 * 178.09873 * 6 5 4 13 13 C 1.34773 * 120.62939 * 6.62550 * 12 6 5 14 14 O 1.21279 * 120.00361 * 5.56940 * 13 12 6 15 15 C 1.50702 * 119.99978 * 185.56923 * 13 12 6 16 16 C 1.52995 * 109.47268 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47268 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99647 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99917 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47372 * 89.99706 * 21 19 17 23 23 H 1.48495 * 109.47233 * 209.99569 * 21 19 17 24 24 H 1.48504 * 109.47348 * 329.99567 * 21 19 17 25 25 H 1.09000 * 109.46596 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47203 * 299.99796 * 1 2 3 27 27 H 1.08998 * 109.46794 * 60.00342 * 1 2 3 28 28 H 1.09005 * 109.47134 * 240.00481 * 2 1 3 29 29 H 1.08995 * 109.47663 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47520 * 300.00323 * 3 2 1 31 31 H 1.09008 * 109.46671 * 59.99713 * 3 2 1 32 32 H 1.08996 * 109.46851 * 305.00200 * 4 2 1 33 33 H 1.08995 * 109.47182 * 185.00059 * 4 2 1 34 34 H 1.08998 * 109.46929 * 64.72921 * 5 4 2 35 35 H 1.09003 * 109.46657 * 304.73038 * 5 4 2 36 36 H 1.08995 * 109.49765 * 294.37310 * 8 6 5 37 37 H 1.08995 * 109.49467 * 54.44257 * 8 6 5 38 38 H 1.09004 * 109.46001 * 58.67728 * 9 8 6 39 39 H 1.08999 * 109.45422 * 178.63022 * 9 8 6 40 40 H 1.09002 * 109.47297 * 301.36755 * 10 9 8 41 41 H 1.08996 * 109.52418 * 181.29888 * 10 9 8 42 42 H 1.09000 * 109.58382 * 185.59639 * 11 10 9 43 43 H 1.08993 * 109.70744 * 65.24114 * 11 10 9 44 44 H 1.09002 * 109.47330 * 300.00362 * 15 13 12 45 45 H 1.08999 * 109.47432 * 59.99756 * 15 13 12 46 46 H 1.08997 * 109.47221 * 299.99782 * 16 15 13 47 47 H 1.09002 * 109.46895 * 60.00406 * 16 15 13 48 48 H 0.96995 * 119.99815 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.0416 -2.8904 2.4890 7 1 3.1238 -2.8413 2.6095 8 6 1.3610 -2.1991 3.6746 9 6 1.6582 -2.9813 4.9561 10 6 1.0937 -4.3984 4.8334 11 6 1.7713 -5.1146 3.6609 12 7 1.6135 -4.2954 2.4514 13 6 1.0865 -4.8229 1.3287 14 8 1.0545 -4.1684 0.3082 15 6 0.5370 -6.2261 1.3413 16 6 0.0029 -6.5772 -0.0487 17 6 -0.5461 -7.9806 -0.0362 18 1 -0.5172 -8.5636 0.8725 19 6 -1.0851 -8.5203 -1.1848 20 7 -1.1207 -7.8101 -2.2911 21 14 -1.7648 -10.2601 -1.1695 22 1 -3.2046 -10.2260 -0.8069 23 1 -1.6079 -10.8647 -2.5166 24 1 -1.0225 -11.0729 -0.1726 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 2.1372 -2.6754 0.3477 35 1 0.5558 -2.2707 1.0575 36 1 1.7432 -1.1830 3.7717 37 1 0.2842 -2.1685 3.5087 38 1 2.7363 -3.0322 5.1086 39 1 1.1950 -2.4775 5.8045 40 1 0.0193 -4.3475 4.6567 41 1 1.2853 -4.9478 5.7550 42 1 1.3035 -6.0870 3.5072 43 1 2.8314 -5.2490 3.8755 44 1 1.3288 -6.9240 1.6137 45 1 -0.2721 -6.2930 2.0687 46 1 -0.7891 -5.8794 -0.3205 47 1 0.8117 -6.5103 -0.7763 48 1 -1.5002 -8.1896 -3.0990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360366245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -66.636000 kcal Electronic energy + Delta-G solvation = -23260.266250 eV Core-core repulsion = 20120.968492 eV Total energy + Delta-G solvation = -3139.297758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24673 -37.27711 -36.60923 -33.66416 -32.79929 -32.53264 -30.67481 -28.69052 -27.10591 -26.16417 -24.62031 -24.05006 -22.06882 -21.09115 -20.31295 -19.76389 -18.37192 -16.77419 -15.96644 -15.64140 -15.19136 -14.91330 -14.50435 -14.44410 -14.28156 -13.95733 -13.73220 -13.58700 -13.20770 -12.91795 -12.47508 -12.24861 -12.11800 -12.09482 -12.01916 -11.64298 -11.29782 -11.11141 -11.04811 -10.96023 -10.92363 -10.89012 -10.67376 -10.56682 -10.46820 -10.21729 -10.20057 -9.90296 -9.51851 -9.07690 -8.36880 -8.31995 -8.22230 -5.94303 -3.98437 3.26865 3.33945 3.34646 3.40595 3.43229 4.48197 4.64837 4.75978 4.81058 4.93283 4.96097 5.04474 5.05885 5.29883 5.33499 5.40683 5.44082 5.51218 5.55640 5.62731 5.66714 5.71407 5.76711 5.82264 5.85712 5.89226 5.92531 5.94847 5.99671 6.01624 6.06669 6.23842 6.24872 6.26901 6.28096 6.36467 6.41175 6.66589 6.72079 6.93944 7.06753 7.76577 7.86827 7.89639 8.09594 8.41620 8.85012 9.10245 9.64974 11.16608 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.004328 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.793744 B = 6467.530815 C = 7938.457636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.148 3.852 7 H 0.061 0.939 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.108 3.892 12 N -0.622 5.622 13 C 0.512 3.488 14 O -0.525 6.525 15 C -0.131 4.131 16 C 0.039 3.961 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 14.099 13.931 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.160 4.160 5 C -0.151 4.151 6 C 0.045 3.955 7 H 0.079 0.921 8 C -0.170 4.170 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.015 4.015 12 N -0.358 5.358 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.030 14.430 13.168 20.762 hybrid contribution -0.390 -0.984 0.159 1.070 sum 6.640 13.446 13.327 20.062 Atomic orbital electron populations 1.21878 0.95326 1.02465 1.00893 1.21056 0.96016 0.95427 0.98860 1.21846 1.00606 0.96520 1.01310 1.21867 1.00069 0.96607 0.97424 1.22241 1.03401 0.92587 0.96833 1.21190 0.97459 0.80921 0.95902 0.92078 1.22054 1.01485 0.98933 0.94562 1.21510 1.00837 0.95718 0.97554 1.21923 1.01000 0.96277 0.98223 1.21676 1.00339 0.95052 0.84421 1.48336 1.64179 1.10876 1.12417 1.21483 0.76221 0.89982 0.82017 1.90672 1.55804 1.61571 1.32030 1.21907 1.00321 0.90597 1.04223 1.18885 0.96646 0.95870 0.88495 1.21227 1.39786 0.99286 0.96169 0.92712 1.25013 0.96064 0.97635 0.95605 1.69997 1.45291 1.36815 1.00724 0.86614 0.79337 0.84844 0.77287 1.20698 1.21230 1.19901 0.91728 0.93276 0.93194 0.91110 0.93029 0.93001 0.93073 0.92415 0.92706 0.88670 0.90732 0.91014 0.91575 0.92066 0.92050 0.91376 0.91022 0.89077 0.91936 0.90563 0.90511 0.95898 0.95873 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.48 16 2 C -0.10 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.12 -1.42 4.44 -26.73 -0.12 -1.54 16 5 C -0.11 -1.67 3.04 -26.73 -0.08 -1.75 16 6 C 0.15 1.96 3.03 -67.60 -0.21 1.76 16 7 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.13 -1.42 4.81 -26.61 -0.13 -1.55 16 9 C -0.12 -1.09 5.89 -26.69 -0.16 -1.25 16 10 C -0.14 -1.33 6.08 -26.61 -0.16 -1.50 16 11 C 0.11 1.27 6.35 -3.71 -0.02 1.25 16 12 N -0.62 -9.33 2.97 -165.22 -0.49 -9.83 16 13 C 0.51 9.95 7.53 -10.99 -0.08 9.86 16 14 O -0.52 -11.81 11.54 5.56 0.06 -11.75 16 15 C -0.13 -2.69 3.99 -27.88 -0.11 -2.80 16 16 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 17 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.61 6.29 -51.93 -0.33 0.29 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.70 6.24 -51.93 -0.32 1.38 16 35 H 0.07 1.27 5.45 -51.93 -0.28 0.99 16 36 H 0.07 0.67 6.64 -51.93 -0.34 0.33 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 45 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -31.93 362.60 -9.47 -41.41 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -9.04 Total: -1.00 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.19 Total: -14.25 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.25 Total: -36.60 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.06 Total: -11.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.93 -9.47 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360366245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.230 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds