Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47334 * 120.00028 * 2 1 3 5 5 C 1.53006 * 109.46946 * 65.00075 * 4 2 1 6 6 C 1.52991 * 109.47038 * 184.72785 * 5 4 2 7 7 H 1.09000 * 109.70609 * 298.45397 * 6 5 4 8 8 C 1.53199 * 109.58683 * 58.80677 * 6 5 4 9 9 C 1.53043 * 109.33692 * 174.40341 * 8 6 5 10 10 C 1.53034 * 109.54327 * 298.68518 * 9 8 6 11 11 C 1.53192 * 109.33754 * 61.31805 * 10 9 8 12 12 N 1.46925 * 109.58687 * 178.09873 * 6 5 4 13 13 C 1.34773 * 120.62939 * 6.62550 * 12 6 5 14 14 O 1.21279 * 120.00361 * 5.56940 * 13 12 6 15 15 C 1.50702 * 119.99978 * 185.56923 * 13 12 6 16 16 C 1.52995 * 109.47268 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47268 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99647 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99917 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47372 * 89.99706 * 21 19 17 23 23 H 1.48495 * 109.47233 * 209.99569 * 21 19 17 24 24 H 1.48504 * 109.47348 * 329.99567 * 21 19 17 25 25 H 1.09000 * 109.46596 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47203 * 299.99796 * 1 2 3 27 27 H 1.08998 * 109.46794 * 60.00342 * 1 2 3 28 28 H 1.09005 * 109.47134 * 240.00481 * 2 1 3 29 29 H 1.08995 * 109.47663 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47520 * 300.00323 * 3 2 1 31 31 H 1.09008 * 109.46671 * 59.99713 * 3 2 1 32 32 H 1.08996 * 109.46851 * 305.00200 * 4 2 1 33 33 H 1.08995 * 109.47182 * 185.00059 * 4 2 1 34 34 H 1.08998 * 109.46929 * 64.72921 * 5 4 2 35 35 H 1.09003 * 109.46657 * 304.73038 * 5 4 2 36 36 H 1.08995 * 109.49765 * 294.37310 * 8 6 5 37 37 H 1.08995 * 109.49467 * 54.44257 * 8 6 5 38 38 H 1.09004 * 109.46001 * 58.67728 * 9 8 6 39 39 H 1.08999 * 109.45422 * 178.63022 * 9 8 6 40 40 H 1.09002 * 109.47297 * 301.36755 * 10 9 8 41 41 H 1.08996 * 109.52418 * 181.29888 * 10 9 8 42 42 H 1.09000 * 109.58382 * 185.59639 * 11 10 9 43 43 H 1.08993 * 109.70744 * 65.24114 * 11 10 9 44 44 H 1.09002 * 109.47330 * 300.00362 * 15 13 12 45 45 H 1.08999 * 109.47432 * 59.99756 * 15 13 12 46 46 H 1.08997 * 109.47221 * 299.99782 * 16 15 13 47 47 H 1.09002 * 109.46895 * 60.00406 * 16 15 13 48 48 H 0.96995 * 119.99815 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.0416 -2.8904 2.4890 7 1 3.1238 -2.8413 2.6095 8 6 1.3610 -2.1991 3.6746 9 6 1.6582 -2.9813 4.9561 10 6 1.0937 -4.3984 4.8334 11 6 1.7713 -5.1146 3.6609 12 7 1.6135 -4.2954 2.4514 13 6 1.0865 -4.8229 1.3287 14 8 1.0545 -4.1684 0.3082 15 6 0.5370 -6.2261 1.3413 16 6 0.0029 -6.5772 -0.0487 17 6 -0.5461 -7.9806 -0.0362 18 1 -0.5172 -8.5636 0.8725 19 6 -1.0851 -8.5203 -1.1848 20 7 -1.1207 -7.8101 -2.2911 21 14 -1.7648 -10.2601 -1.1695 22 1 -3.2046 -10.2260 -0.8069 23 1 -1.6079 -10.8647 -2.5166 24 1 -1.0225 -11.0729 -0.1726 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 2.1372 -2.6754 0.3477 35 1 0.5558 -2.2707 1.0575 36 1 1.7432 -1.1830 3.7717 37 1 0.2842 -2.1685 3.5087 38 1 2.7363 -3.0322 5.1086 39 1 1.1950 -2.4775 5.8045 40 1 0.0193 -4.3475 4.6567 41 1 1.2853 -4.9478 5.7550 42 1 1.3035 -6.0870 3.5072 43 1 2.8314 -5.2490 3.8755 44 1 1.3288 -6.9240 1.6137 45 1 -0.2721 -6.2930 2.0687 46 1 -0.7891 -5.8794 -0.3205 47 1 0.8117 -6.5103 -0.7763 48 1 -1.5002 -8.1896 -3.0990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360366245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = -84.203893 kcal Electronic energy + Delta-G solvation = -23261.028051 eV Core-core repulsion = 20120.968492 eV Total energy + Delta-G solvation = -3140.059559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54180 -38.56622 -37.61203 -35.64662 -34.16976 -33.58934 -32.56578 -29.64451 -28.04287 -28.00840 -25.94235 -25.04591 -23.77033 -22.16540 -21.58669 -20.76266 -19.74528 -18.66318 -17.44450 -17.02359 -16.61004 -16.36507 -16.07082 -15.42582 -15.25472 -15.04538 -14.91966 -14.81284 -14.41952 -14.11076 -14.07210 -13.69440 -13.43955 -13.21086 -13.11515 -13.00415 -12.82232 -12.64403 -12.46912 -12.21459 -12.01362 -11.96759 -11.92830 -11.74645 -11.62706 -11.50621 -11.42985 -11.27633 -11.22483 -11.17298 -10.57632 -9.85635 -9.45800 -8.18701 -6.33044 1.40771 1.43752 1.54695 1.75215 2.10641 2.42538 3.14091 3.59868 3.87233 3.92495 3.98855 4.03737 4.09866 4.12452 4.18854 4.35094 4.42141 4.47709 4.50689 4.52416 4.62653 4.73453 4.75421 4.80942 4.84485 4.89499 4.94529 5.01004 5.02116 5.04108 5.10077 5.15457 5.17849 5.25329 5.28617 5.34931 5.41750 5.47545 5.48117 5.57181 5.60153 5.62368 5.82944 5.88677 6.17197 6.51242 6.85506 7.36044 7.39174 8.93937 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.004328 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.793744 B = 6467.530815 C = 7938.457636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.105 4.105 6 C 0.143 3.857 7 H 0.078 0.922 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.132 4.132 11 C 0.098 3.902 12 N -0.613 5.613 13 C 0.506 3.494 14 O -0.571 6.571 15 C -0.118 4.118 16 C 0.047 3.953 17 C -0.544 4.544 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.255 1.255 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.094 0.906 46 H -0.020 1.020 47 H -0.019 1.019 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 14.086 17.474 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.196 4.196 4 C -0.149 4.149 5 C -0.142 4.142 6 C 0.041 3.959 7 H 0.096 0.904 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.347 5.347 13 C 0.296 3.704 14 O -0.450 6.450 15 C -0.157 4.157 16 C 0.009 3.991 17 C -0.581 4.581 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.113 0.887 46 H -0.002 1.002 47 H -0.001 1.001 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.904 14.423 16.784 23.499 hybrid contribution -0.635 -0.940 -0.958 1.485 sum 7.269 13.483 15.826 22.025 Atomic orbital electron populations 1.21844 0.95914 1.00584 1.01933 1.21083 0.95574 0.97062 0.98065 1.21780 1.01120 0.94495 1.02180 1.21788 1.00944 0.94132 0.98046 1.21964 1.00846 0.94874 0.96544 1.21402 0.98599 0.79775 0.96122 0.90425 1.22011 1.00110 1.00100 0.94120 1.21523 1.01944 0.94878 0.96888 1.21918 0.99863 0.97011 0.98203 1.22027 1.02107 0.94726 0.83553 1.48328 1.62206 1.12076 1.12050 1.21259 0.76803 0.89458 0.82845 1.90695 1.57879 1.62362 1.34082 1.21647 1.01414 0.92297 1.00386 1.18644 0.94012 0.95019 0.91386 1.21705 1.39571 0.99842 0.97023 0.90786 1.26133 0.96273 1.02914 0.95005 1.70183 1.46457 1.39400 1.01695 0.85328 0.78843 0.78452 0.77668 1.19685 1.21098 1.17852 0.95028 0.91582 0.92763 0.93594 0.92147 0.92708 0.91639 0.90376 0.91304 0.92794 0.93941 0.88836 0.93306 0.90536 0.90176 0.92810 0.88251 0.89352 0.89650 0.88491 0.88738 1.00203 1.00064 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.95 71.98 0.64 -3.08 16 2 C -0.10 -2.39 2.92 -10.79 -0.03 -2.42 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C -0.11 -2.54 4.44 30.60 0.14 -2.40 16 5 C -0.10 -3.25 3.04 30.59 0.09 -3.16 16 6 C 0.14 3.67 3.03 44.97 0.14 3.80 16 7 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 8 C -0.13 -2.39 4.81 30.68 0.15 -2.24 16 9 C -0.11 -1.65 5.89 30.62 0.18 -1.47 16 10 C -0.13 -2.15 6.08 30.67 0.19 -1.97 16 11 C 0.10 2.06 6.35 86.36 0.55 2.61 16 12 N -0.61 -18.20 2.97 -795.03 -2.36 -20.57 16 13 C 0.51 20.64 7.53 87.66 0.66 21.30 16 14 O -0.57 -28.10 11.54 -3.03 -0.03 -28.13 16 15 C -0.12 -4.99 3.99 29.85 0.12 -4.87 16 16 C 0.05 2.70 4.26 29.85 0.13 2.83 16 17 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 20 N -0.94 -60.45 13.29 21.45 0.28 -60.16 16 21 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 25 H 0.03 1.00 6.47 -2.39 -0.02 0.98 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.48 6.29 -2.39 -0.02 1.46 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.05 2.11 6.24 -2.39 -0.01 2.10 16 35 H 0.04 1.58 5.45 -2.39 -0.01 1.57 16 36 H 0.09 1.40 6.64 -2.39 -0.02 1.39 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.92 5.93 -2.39 -0.01 1.90 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.10 3.67 7.71 -2.39 -0.02 3.65 16 45 H 0.09 3.63 7.92 -2.39 -0.02 3.61 16 46 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 47 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 48 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -75.51 362.60 5.11 -70.40 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.89 Total: 15.72 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 4.30 Total: -24.19 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.08 Total: -80.73 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.03 Total: -28.13 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -75.51 5.11 -70.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360366245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.799 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds