Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4 8 8 C 1.52993 * 109.46886 * 59.99636 * 7 6 5 9 9 N 1.46494 * 109.47268 * 65.00648 * 8 7 6 10 10 C 1.34784 * 120.00125 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.47152 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47344 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99611 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99982 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47068 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46676 * 120.00267 * 18 16 14 21 21 H 1.48495 * 109.47326 * 239.99885 * 18 16 14 22 22 C 1.53000 * 109.46632 * 300.00027 * 7 6 5 23 23 C 1.52996 * 109.47518 * 59.99681 * 22 7 6 24 24 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 25 25 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 28 28 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 30 30 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 5 4 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 34 34 H 1.09001 * 109.47367 * 299.99815 * 6 5 4 35 35 H 1.09004 * 109.47108 * 180.02562 * 6 5 4 36 36 H 1.08992 * 109.47199 * 180.02562 * 7 6 5 37 37 H 1.09008 * 109.46821 * 185.00428 * 8 7 6 38 38 H 1.09006 * 109.47709 * 305.00138 * 8 7 6 39 39 H 0.96997 * 120.00250 * 359.97438 * 9 8 7 40 40 H 1.08999 * 109.46801 * 299.99526 * 12 10 9 41 41 H 1.08997 * 109.47563 * 59.99623 * 12 10 9 42 42 H 1.09008 * 109.46873 * 299.99800 * 13 12 10 43 43 H 1.08997 * 109.47047 * 59.99488 * 13 12 10 44 44 H 0.97004 * 120.00589 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.47194 * 299.99548 * 22 7 6 46 46 H 1.09000 * 109.46968 * 179.97438 * 22 7 6 47 47 H 1.08996 * 109.47452 * 180.02562 * 23 22 7 48 48 H 1.09001 * 109.46997 * 59.99746 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0799 -1.4426 2.4985 7 6 3.5695 -2.8849 2.4994 8 6 4.0790 -3.6070 1.2505 9 7 5.5389 -3.7126 1.3089 10 6 6.2116 -4.3153 0.3085 11 8 5.6081 -4.7705 -0.6400 12 6 7.7134 -4.4245 0.3689 13 6 8.2230 -5.1464 -0.8801 14 6 9.7248 -5.2551 -0.8200 15 1 10.2621 -4.8501 0.0248 16 6 10.4128 -5.8724 -1.8430 17 7 9.7585 -6.3660 -2.8715 18 14 12.2746 -6.0064 -1.7688 19 1 12.7667 -5.3767 -0.5172 20 1 12.6689 -7.4380 -1.7904 21 1 12.8679 -5.3119 -2.9395 22 6 2.0395 -2.8843 2.4996 23 6 1.5295 -2.1636 1.2502 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 -0.2074 2.1393 32 1 3.9330 -1.2359 0.3590 33 1 3.9337 0.3057 1.2488 34 1 3.7170 -0.9281 3.3883 35 1 5.1700 -1.4426 2.4985 36 1 3.9324 -3.3982 3.3898 37 1 3.6439 -4.6054 1.2052 38 1 3.7906 -3.0444 0.3624 39 1 6.0216 -3.3482 2.0673 40 1 8.1487 -3.4262 0.4150 41 1 8.0014 -4.9877 1.2565 42 1 7.7876 -6.1448 -0.9258 43 1 7.9350 -4.5836 -1.7680 44 1 10.2426 -6.8000 -3.5914 45 1 1.6764 -2.3699 3.3894 46 1 1.6757 -3.9119 2.4998 47 1 0.4395 -2.1628 1.2506 48 1 1.8925 -2.6780 0.3604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360374741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -92.901681 kcal Electronic energy + Delta-G solvation = -22571.989459 eV Core-core repulsion = 19431.552736 eV Total energy + Delta-G solvation = -3140.436723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13092 -38.72047 -36.04890 -33.56424 -33.39136 -31.12595 -31.00795 -29.81724 -27.38517 -26.59730 -24.90659 -22.88046 -22.60856 -21.46687 -20.07184 -19.62726 -18.84821 -16.82545 -16.27064 -15.68959 -15.55791 -15.21218 -14.68611 -14.42850 -14.35721 -14.12293 -13.65743 -13.51155 -13.40464 -12.89324 -12.82353 -12.49020 -12.45801 -12.15290 -11.96572 -11.84996 -11.43962 -11.30457 -11.24340 -11.13584 -11.10944 -10.92205 -10.83855 -10.55911 -10.34209 -10.07261 -10.01545 -9.92244 -9.62532 -9.12452 -8.94688 -8.64574 -8.29685 -5.93750 -3.97922 3.33690 3.34559 3.40792 3.44179 3.66733 4.35290 4.44659 4.49744 4.54193 4.70936 4.84257 4.88627 5.04167 5.15004 5.21789 5.33956 5.35979 5.37410 5.41162 5.43529 5.46097 5.51699 5.59126 5.63071 5.71638 5.75322 5.80845 5.83821 5.86076 5.95396 6.01321 6.05358 6.07301 6.11119 6.23005 6.26673 6.28273 6.30117 6.40822 6.84000 6.94528 7.77668 7.90237 7.98095 8.10474 8.42069 8.86827 9.11311 9.65472 11.17261 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.002908 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.506430 B = 9626.439015 C = 9916.689905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.078 4.078 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.099 4.099 8 C 0.121 3.879 9 N -0.743 5.743 10 C 0.508 3.492 11 O -0.537 6.537 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.122 4.122 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 13.945 12.864 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.097 4.097 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.118 4.118 8 C -0.003 4.003 9 N -0.397 5.397 10 C 0.296 3.704 11 O -0.412 6.412 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.147 4.147 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.669 13.511 11.983 25.974 hybrid contribution 1.236 0.061 0.366 1.290 sum -17.433 13.572 12.349 25.310 Atomic orbital electron populations 1.21891 0.95491 1.01795 1.01386 1.21163 0.95533 0.96165 0.98482 1.21892 1.01378 0.95981 1.01367 1.21174 0.95352 0.95521 0.97623 1.21705 0.95005 1.00437 0.98674 1.21548 1.00464 0.94819 0.98251 1.21367 0.96094 0.96287 0.98043 1.21413 0.81016 0.99954 0.97923 1.46222 1.07048 1.61836 1.24612 1.21533 0.91431 0.76166 0.81261 1.90663 1.70681 1.46750 1.33136 1.21853 0.88421 1.02733 1.04010 1.18896 0.94857 0.95832 0.90498 1.21269 0.92039 1.37490 1.05591 0.92587 1.25030 0.98357 0.95571 0.95490 1.70008 1.35333 1.38362 1.09151 0.86542 0.85830 0.77708 0.77923 1.19762 1.21035 1.21027 1.21482 0.94207 1.00650 0.98382 1.21721 1.00290 0.95375 0.98531 0.92947 0.92992 0.92366 0.91133 0.92975 0.92957 0.92274 0.91507 0.91292 0.91801 0.92009 0.91793 0.90759 0.92266 0.91223 0.77124 0.90377 0.90375 0.95863 0.95860 0.93031 0.91767 0.91767 0.91769 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 4 C -0.08 -0.63 1.77 -90.62 -0.16 -0.79 16 5 C -0.12 -1.10 4.58 -26.73 -0.12 -1.22 16 6 C -0.11 -0.96 5.32 -26.73 -0.14 -1.10 16 7 C -0.10 -0.89 2.70 -90.62 -0.24 -1.14 16 8 C 0.12 1.53 4.36 -4.05 -0.02 1.51 16 9 N -0.74 -10.59 5.28 -60.29 -0.32 -10.91 16 10 C 0.51 10.00 7.83 -10.98 -0.09 9.92 16 11 O -0.54 -13.01 15.98 5.55 0.09 -12.92 16 12 C -0.13 -2.70 5.64 -27.88 -0.16 -2.85 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 C -0.11 -0.88 5.45 -26.73 -0.15 -1.03 16 23 C -0.12 -1.02 4.58 -26.73 -0.12 -1.14 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 33 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.07 0.96 4.83 -51.93 -0.25 0.71 16 39 H 0.40 4.48 7.65 -40.82 -0.31 4.16 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 48 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.44 363.00 -9.16 -42.60 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.82 Total: -0.71 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.30 Total: -13.37 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.42 Total: -37.92 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -9.16 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360374741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.304 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds