Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.52992 * 109.47511 * 120.00107 * 2 1 3 5 5 C 1.53006 * 109.47139 * 63.81973 * 4 2 1 6 6 C 1.50700 * 115.55089 * 54.94974 * 5 4 2 7 7 O 1.21281 * 120.00401 * 245.62307 * 6 5 4 8 8 N 1.34784 * 119.99639 * 65.34085 * 6 5 4 9 9 C 1.46493 * 119.99751 * 175.15112 * 8 6 5 10 10 C 1.53007 * 109.47069 * 185.34082 * 9 8 6 11 11 C 1.53002 * 109.47040 * 297.30846 * 10 9 8 12 12 C 1.52998 * 109.46739 * 57.30974 * 10 9 8 13 13 C 1.53001 * 109.46884 * 177.30905 * 10 9 8 14 14 C 1.50703 * 109.46623 * 180.02562 * 13 10 9 15 15 H 1.08000 * 120.00054 * 359.97438 * 14 13 10 16 16 C 1.37885 * 119.99669 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99874 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99759 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47029 * 120.00021 * 18 16 14 21 21 H 1.48497 * 109.46953 * 240.00157 * 18 16 14 22 22 C 1.53002 * 117.49940 * 200.62263 * 5 4 2 23 23 C 1.53003 * 117.49807 * 269.28521 * 5 4 2 24 24 H 1.08995 * 109.47087 * 59.62981 * 1 2 3 25 25 H 1.08994 * 109.46831 * 179.63341 * 1 2 3 26 26 H 1.09004 * 109.46483 * 299.62849 * 1 2 3 27 27 H 1.09003 * 109.46842 * 240.00655 * 2 1 3 28 28 H 1.08999 * 109.47094 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47022 * 300.00018 * 3 2 1 30 30 H 1.08997 * 109.47424 * 60.00491 * 3 2 1 31 31 H 1.09003 * 109.47331 * 303.82481 * 4 2 1 32 32 H 1.08997 * 109.47556 * 183.81546 * 4 2 1 33 33 H 0.97002 * 119.99815 * 355.16025 * 8 6 5 34 34 H 1.08998 * 109.47886 * 305.34138 * 9 8 6 35 35 H 1.09006 * 109.47022 * 65.34418 * 9 8 6 36 36 H 1.09001 * 109.46816 * 64.18619 * 11 10 9 37 37 H 1.08998 * 109.47229 * 184.18999 * 11 10 9 38 38 H 1.08999 * 109.47156 * 304.18738 * 11 10 9 39 39 H 1.08990 * 109.47305 * 60.00178 * 12 10 9 40 40 H 1.09005 * 109.46287 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47207 * 300.00010 * 12 10 9 42 42 H 1.08996 * 109.47307 * 299.99511 * 13 10 9 43 43 H 1.08998 * 109.47412 * 60.00351 * 13 10 9 44 44 H 0.96999 * 119.99311 * 179.97438 * 17 16 14 45 45 H 1.08999 * 117.49384 * 214.99721 * 22 5 4 46 46 H 1.08999 * 117.49762 * 0.02562 * 22 5 4 47 47 H 1.08998 * 117.49683 * 359.97158 * 23 5 4 48 48 H 1.08999 * 117.49731 * 144.97240 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6101 -2.1889 1.2020 6 6 2.0155 -2.9455 -0.0366 7 8 1.1683 -3.3531 -0.8028 8 7 3.3199 -3.1643 -0.2960 9 6 3.7106 -3.9896 -1.4415 10 6 5.2276 -4.1884 -1.4331 11 6 5.9204 -2.8335 -1.5926 12 6 5.6512 -4.8250 -0.1080 13 6 5.6282 -5.1054 -2.5906 14 6 7.1223 -5.3016 -2.5820 15 1 7.7259 -4.8201 -1.8268 16 6 7.7189 -6.0950 -3.5389 17 7 6.9840 -6.6809 -4.4588 18 14 9.5711 -6.3377 -3.5286 19 1 10.1639 -5.5762 -2.3999 20 1 9.8803 -7.7813 -3.3690 21 1 10.1415 -5.8479 -4.8092 22 6 1.5825 -2.9597 2.5234 23 6 0.2711 -2.5537 1.8461 24 1 -0.3633 0.5195 -0.8866 25 1 -0.3633 -1.0276 -0.0066 26 1 -0.3632 0.5081 0.8934 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6219 -0.2485 2.1379 32 1 3.1280 -0.6624 1.2840 33 1 4.0000 -2.7753 0.2760 34 1 3.2168 -4.9592 -1.3761 35 1 3.4143 -3.4926 -2.3653 36 1 5.6944 -2.2062 -0.7303 37 1 6.9979 -2.9822 -1.6614 38 1 5.5622 -2.3468 -2.4997 39 1 5.1578 -5.7901 0.0056 40 1 6.7321 -4.9661 -0.1019 41 1 5.3658 -4.1718 0.7166 42 1 5.1347 -6.0706 -2.4770 43 1 5.3264 -4.6518 -3.5347 44 1 7.4038 -7.2388 -5.1321 45 1 1.8575 -4.0141 2.4967 46 1 1.8703 -2.4212 3.4263 47 1 -0.3032 -1.7483 2.3038 48 1 -0.3167 -3.3407 1.3737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -54.685422 kcal Electronic energy + Delta-G solvation = -23197.052136 eV Core-core repulsion = 20058.272594 eV Total energy + Delta-G solvation = -3138.779542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26472 -37.84889 -36.68245 -35.03071 -33.54289 -32.04815 -28.04884 -27.26390 -27.11824 -26.51317 -26.30703 -23.57064 -22.56200 -22.04803 -20.56098 -19.43599 -18.01724 -16.67964 -16.32561 -15.80440 -15.56813 -14.89997 -14.51665 -14.45864 -14.30663 -13.81793 -13.34960 -13.33807 -13.13797 -12.76068 -12.44400 -12.35413 -12.10235 -12.07628 -11.93198 -11.67783 -11.55788 -11.19453 -11.15762 -11.02253 -10.83206 -10.78829 -10.65469 -10.41301 -10.31553 -10.24347 -10.04382 -9.87687 -9.62413 -9.14849 -8.91625 -8.67900 -8.36692 -6.00550 -4.01750 2.78632 3.29641 3.34168 3.37998 3.40412 3.64608 4.38199 4.44731 4.64660 4.67065 4.82043 4.88748 5.03146 5.17736 5.35108 5.45964 5.47191 5.48272 5.51789 5.57172 5.62127 5.63525 5.74612 5.75278 5.77754 5.82421 5.89605 5.99085 6.07660 6.17555 6.23053 6.24327 6.26359 6.30611 6.39806 6.58424 6.62845 6.78692 7.06549 7.07499 7.13254 7.63963 7.76065 7.80544 7.98395 8.39751 8.48729 9.03290 9.61428 11.10970 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003599 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.699214 B = 7778.411952 C = 8042.279105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.070 4.070 5 C -0.155 4.155 6 C 0.546 3.454 7 O -0.543 6.543 8 N -0.716 5.716 9 C 0.128 3.872 10 C -0.072 4.072 11 C -0.128 4.128 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.162 4.162 23 C -0.145 4.145 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.259 0.741 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 13.062 14.097 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.108 4.108 5 C -0.158 4.158 6 C 0.331 3.669 7 O -0.420 6.420 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.072 4.072 11 C -0.186 4.186 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.199 4.199 23 C -0.182 4.182 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.641 12.630 13.379 21.254 hybrid contribution 1.405 -0.088 0.078 1.410 sum -9.236 12.542 13.457 20.584 Atomic orbital electron populations 1.21876 0.94973 1.02623 1.00968 1.21094 0.96446 0.95892 0.98149 1.21832 1.00998 0.95900 1.01619 1.21157 1.00790 0.90227 0.98603 1.21509 1.04343 0.96523 0.93432 1.19430 0.82715 0.79171 0.85592 1.90687 1.50791 1.51900 1.48609 1.46136 1.06717 1.52363 1.31485 1.21639 0.96311 0.94139 0.87400 1.20897 0.90631 0.97078 0.98623 1.21782 1.02255 0.95360 0.99156 1.21748 1.02561 0.99156 0.94886 1.19090 0.96476 0.93416 0.91195 1.21224 0.92225 1.28807 1.12623 0.92187 1.25018 0.97846 0.95961 0.95683 1.69978 1.35064 1.32159 1.16171 0.86597 0.86066 0.77847 0.77846 1.19791 1.21130 1.21129 1.23097 1.01603 1.00801 0.94407 1.23006 0.90021 1.03475 1.01700 0.93132 0.91511 0.93179 0.91082 0.92646 0.92667 0.92845 0.91000 0.91204 0.76646 0.91779 0.92065 0.95250 0.91218 0.93490 0.93446 0.91467 0.95201 0.96380 0.96359 0.93096 0.88378 0.88024 0.88139 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.73 37.16 0.32 -1.15 16 2 C -0.10 -1.00 2.76 -90.62 -0.25 -1.25 16 3 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 4 C -0.07 -0.65 4.66 -26.73 -0.12 -0.77 16 5 C -0.15 -1.71 1.46 -155.65 -0.23 -1.94 16 6 C 0.55 8.21 5.95 -10.98 -0.07 8.15 16 7 O -0.54 -10.32 16.71 5.56 0.09 -10.23 16 8 N -0.72 -10.53 4.96 -60.29 -0.30 -10.83 16 9 C 0.13 2.29 4.57 -4.04 -0.02 2.27 16 10 C -0.07 -1.36 0.54 -154.50 -0.08 -1.45 16 11 C -0.13 -2.24 8.09 37.16 0.30 -1.94 16 12 C -0.13 -2.21 8.02 37.16 0.30 -1.91 16 13 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 14 C -0.51 -13.52 7.60 -34.44 -0.26 -13.78 16 15 H 0.06 1.53 5.69 -52.49 -0.30 1.23 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.16 -1.50 9.96 -26.69 -0.27 -1.77 16 23 C -0.14 -1.44 8.07 -26.69 -0.22 -1.66 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.77 6.25 -51.93 -0.32 0.45 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.91 7.29 -51.93 -0.38 0.54 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 5.07 6.22 -40.82 -0.25 4.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.03 0.42 7.04 -51.93 -0.37 0.05 16 37 H 0.07 1.32 6.49 -51.93 -0.34 0.99 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 41 H 0.03 0.43 6.81 -51.93 -0.35 0.07 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 1.17 8.00 -51.93 -0.42 0.76 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -30.29 373.85 -8.28 -38.58 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.97 Total: 2.30 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.44 Total: -36.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.29 -8.28 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.110 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds