Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 C 1.52998 * 109.47335 * 301.91552 * 3 2 1 5 5 C 1.52994 * 109.47121 * 184.83922 * 4 3 2 6 6 C 1.53003 * 109.46999 * 181.91420 * 3 2 1 7 7 C 1.52998 * 109.47185 * 300.00224 * 6 3 2 8 8 C 1.52997 * 109.47034 * 299.99934 * 7 6 3 9 9 N 1.46506 * 109.47088 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99900 * 85.00082 * 9 8 7 11 11 O 1.21280 * 120.00103 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00007 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.47077 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47031 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00376 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00503 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99651 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47340 * 90.00158 * 18 16 14 20 20 H 1.48498 * 109.46944 * 209.99768 * 18 16 14 21 21 H 1.48496 * 109.47064 * 329.99741 * 18 16 14 22 22 C 1.53001 * 109.47439 * 60.00402 * 8 7 6 23 23 C 1.52998 * 109.46679 * 299.99815 * 22 8 7 24 24 H 1.08998 * 109.46713 * 298.65486 * 1 2 3 25 25 H 1.08999 * 109.47046 * 58.65824 * 1 2 3 26 26 H 1.08998 * 109.46575 * 178.65875 * 1 2 3 27 27 H 1.09002 * 109.47110 * 120.00059 * 2 1 3 28 28 H 1.09000 * 109.47206 * 240.00391 * 2 1 3 29 29 H 1.09001 * 109.47219 * 304.84567 * 4 3 2 30 30 H 1.09001 * 109.46790 * 64.84039 * 4 3 2 31 31 H 1.08995 * 109.47418 * 305.67777 * 5 4 3 32 32 H 1.09009 * 109.46955 * 65.67515 * 5 4 3 33 33 H 1.08996 * 109.47200 * 185.67049 * 5 4 3 34 34 H 1.08996 * 109.47242 * 59.99989 * 6 3 2 35 35 H 1.08997 * 109.46814 * 180.02562 * 6 3 2 36 36 H 1.09003 * 109.47411 * 180.02562 * 7 6 3 37 37 H 1.09005 * 109.47199 * 59.99920 * 7 6 3 38 38 H 1.08994 * 109.47771 * 299.99761 * 8 7 6 39 39 H 0.97003 * 120.00374 * 264.99992 * 9 8 7 40 40 H 1.09003 * 109.46871 * 299.99392 * 12 10 9 41 41 H 1.08995 * 109.47313 * 59.99990 * 12 10 9 42 42 H 1.08997 * 109.47360 * 300.00215 * 13 12 10 43 43 H 1.09012 * 109.47049 * 59.99971 * 13 12 10 44 44 H 0.96993 * 120.00746 * 180.02562 * 17 16 14 45 45 H 1.08996 * 109.47601 * 180.02562 * 22 8 7 46 46 H 1.09005 * 109.47264 * 59.99726 * 22 8 7 47 47 H 1.08997 * 109.47353 * 299.99673 * 23 22 8 48 48 H 1.09003 * 109.47411 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4910 2.1776 -1.2244 5 6 2.0959 3.5814 -1.2901 6 6 3.5693 1.4429 -0.0482 7 6 4.1183 0.7078 1.1762 8 6 3.6480 1.4150 2.4488 9 7 4.1732 0.7108 3.6213 10 6 5.4101 0.9908 4.0775 11 8 6.0882 1.8261 3.5177 12 6 5.9505 0.2661 5.2832 13 6 7.3636 0.7670 5.5883 14 6 7.9038 0.0427 6.7944 15 1 7.2999 -0.7009 7.2931 16 6 9.1696 0.3286 7.2605 17 7 9.9053 1.2336 6.6529 18 14 9.8395 -0.5698 8.7550 19 1 10.5480 -1.7992 8.3172 20 1 10.7858 0.3148 9.4812 21 1 8.7173 -0.9390 9.6548 22 6 2.1188 1.4146 2.4972 23 6 1.5698 2.1497 1.2728 24 1 -0.3633 0.4928 0.9018 25 1 -0.3633 0.5345 -0.8777 26 1 -0.3632 -1.0274 -0.0241 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.7535 1.6261 -2.1272 30 1 0.4063 2.2526 -1.1470 31 1 1.9196 4.0976 -0.3465 32 1 3.1687 3.5068 -1.4685 33 1 1.6306 4.1399 -2.1023 34 1 3.9043 0.9391 -0.9548 35 1 3.9325 2.4705 -0.0477 36 1 5.2078 0.7084 1.1422 37 1 3.7549 -0.3199 1.1762 38 1 4.0113 2.4426 2.4490 39 1 3.6307 0.0430 4.0693 40 1 5.3046 0.4553 6.1406 41 1 5.9808 -0.8044 5.0803 42 1 8.0093 0.5776 4.7309 43 1 7.3337 1.8377 5.7911 44 1 10.7958 1.4345 6.9805 45 1 1.7837 1.9188 3.4036 46 1 1.7554 0.3869 2.4971 47 1 1.9330 3.1774 1.2728 48 1 0.4803 2.1491 1.3068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360473534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -86.885606 kcal Electronic energy + Delta-G solvation = -22857.213779 eV Core-core repulsion = 19717.037933 eV Total energy + Delta-G solvation = -3140.175847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48130 -38.78918 -35.33917 -33.40610 -32.29443 -32.14780 -30.90871 -30.78563 -27.80578 -25.64617 -24.24195 -23.36033 -22.60488 -21.80387 -20.69332 -19.58995 -18.04786 -16.76992 -16.13166 -15.59276 -15.36992 -15.19234 -14.81234 -14.74041 -14.42748 -14.38828 -13.76025 -13.34021 -13.01859 -12.75458 -12.50908 -12.37623 -12.22205 -12.08802 -12.05758 -11.92144 -11.76769 -11.46796 -11.28730 -11.12277 -10.92805 -10.84814 -10.69461 -10.56828 -10.28292 -10.13671 -10.02801 -9.91606 -9.62180 -9.12563 -8.92876 -8.66465 -8.29534 -5.93743 -3.98019 3.33164 3.34755 3.40479 3.43153 3.61400 4.42093 4.48344 4.49036 4.55020 4.79267 4.95698 5.01414 5.04844 5.19438 5.23888 5.29406 5.32036 5.37898 5.41044 5.41183 5.52010 5.56006 5.62681 5.67334 5.72203 5.75079 5.83875 5.87287 5.92467 5.94139 6.01698 6.08780 6.10864 6.21479 6.23697 6.27564 6.29604 6.39562 6.43812 6.88616 6.94552 7.77202 7.90079 7.99112 8.10360 8.41973 8.87128 9.11051 9.65315 11.17237 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038633 B = 0.002893 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.588000 B = 9674.667150 C =10011.284278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.057 4.057 4 C -0.113 4.113 5 C -0.158 4.158 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.147 3.853 9 N -0.742 5.742 10 C 0.510 3.490 11 O -0.535 6.535 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.107 4.107 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.395 0.605 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 -0.802 -15.101 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.057 4.057 4 C -0.150 4.150 5 C -0.215 4.215 6 C -0.145 4.145 7 C -0.170 4.170 8 C 0.042 3.958 9 N -0.394 5.394 10 C 0.298 3.702 11 O -0.411 6.411 12 C -0.171 4.171 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.165 4.165 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.228 0.772 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.010 -0.085 -15.488 26.101 hybrid contribution 0.189 -0.842 1.013 1.331 sum -20.821 -0.926 -14.475 25.375 Atomic orbital electron populations 1.21885 0.96210 1.01265 1.01904 1.21675 0.95586 0.96007 1.02181 1.20594 0.95292 0.95000 0.94796 1.21601 1.00074 0.95921 0.97433 1.21909 1.01267 0.96736 1.01632 1.21612 0.94002 1.01163 0.97708 1.21965 1.01446 0.99438 0.94106 1.20841 0.92607 0.97325 0.85064 1.46296 1.17684 1.43770 1.31686 1.21531 0.80247 0.82637 0.85783 1.90658 1.57621 1.33545 1.59237 1.21863 1.01945 0.99818 0.93454 1.18887 0.87634 0.96912 0.96578 1.21236 1.00207 1.22144 1.12907 0.92644 1.25028 0.97048 0.95246 0.97092 1.69994 1.10262 1.32184 1.40422 0.86596 0.78863 0.79557 0.82959 1.20687 1.21229 1.19902 1.21844 0.94650 1.01435 0.98587 1.21615 1.00286 0.99347 0.93197 0.92503 0.92632 0.93187 0.91251 0.92272 0.92198 0.91900 0.92341 0.92341 0.93207 0.92002 0.91370 0.91356 0.91821 0.89927 0.77187 0.90375 0.90380 0.95878 0.95871 0.92972 0.91547 0.91292 0.91488 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.21 37.16 0.34 -0.69 16 2 C -0.12 -0.89 4.29 -26.73 -0.11 -1.01 16 3 C -0.06 -0.46 0.32 -154.50 -0.05 -0.51 16 4 C -0.11 -0.82 4.43 -26.73 -0.12 -0.94 16 5 C -0.16 -1.20 9.11 37.15 0.34 -0.86 16 6 C -0.11 -1.06 4.25 -26.73 -0.11 -1.17 16 7 C -0.13 -1.58 5.22 -26.73 -0.14 -1.72 16 8 C 0.15 1.85 2.45 -67.93 -0.17 1.69 16 9 N -0.74 -10.55 5.08 -53.81 -0.27 -10.82 16 10 C 0.51 9.96 7.79 -10.99 -0.09 9.87 16 11 O -0.54 -12.80 15.65 5.56 0.09 -12.71 16 12 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.13 -1.19 5.12 -26.73 -0.14 -1.32 16 23 C -0.11 -0.88 4.18 -26.73 -0.11 -0.99 16 24 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 25 H 0.05 0.35 6.43 -51.93 -0.33 0.01 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.57 4.81 -51.93 -0.25 0.32 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 6.64 -51.93 -0.34 0.08 16 31 H 0.06 0.45 6.31 -51.93 -0.33 0.12 16 32 H 0.06 0.47 6.69 -51.92 -0.35 0.13 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 6.48 -51.93 -0.34 0.39 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.71 6.47 -51.93 -0.34 0.37 16 38 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 39 H 0.39 4.45 8.60 -40.82 -0.35 4.09 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.58 6.39 -51.93 -0.33 0.25 16 47 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 48 H 0.07 0.49 6.50 -51.93 -0.34 0.15 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -33.23 357.13 -8.68 -41.91 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.55 Total: -0.12 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.04 Total: -13.48 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.46 Total: -37.84 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.23 -8.68 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360473534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.975 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds