Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46947 * 2 1 4 4 C 1.53004 * 109.46696 * 119.99619 * 2 1 3 5 5 C 1.52996 * 109.46750 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47073 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46786 * 60.00140 * 6 5 4 8 8 N 1.46503 * 109.47606 * 60.00063 * 7 6 5 9 9 C 1.46499 * 119.99777 * 239.19345 * 8 7 6 10 10 C 1.34776 * 119.99722 * 59.18414 * 8 7 6 11 11 O 1.21274 * 120.00382 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99737 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47321 * 180.02562 * 12 10 8 14 14 C 1.50700 * 109.47650 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99524 * 0.02562 * 14 13 12 16 16 C 1.37866 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00435 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99988 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47198 * 89.99869 * 18 16 14 20 20 H 1.48503 * 109.47400 * 209.99871 * 18 16 14 21 21 H 1.48501 * 109.47096 * 329.99554 * 18 16 14 22 22 C 1.52996 * 109.47200 * 299.99782 * 7 6 5 23 23 C 1.52995 * 109.47164 * 60.00136 * 4 2 1 24 24 H 1.08997 * 109.47542 * 300.00405 * 1 2 3 25 25 H 1.09005 * 109.46955 * 60.00904 * 1 2 3 26 26 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47542 * 239.99595 * 2 1 3 28 28 H 1.09002 * 109.46854 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47011 * 299.99064 * 3 2 1 30 30 H 1.08997 * 109.47330 * 59.99465 * 3 2 1 31 31 H 1.08997 * 109.47097 * 299.99686 * 4 2 1 32 32 H 1.09006 * 109.47332 * 299.99650 * 5 4 2 33 33 H 1.09000 * 109.47546 * 59.99796 * 5 4 2 34 34 H 1.08997 * 109.47107 * 300.00100 * 6 5 4 35 35 H 1.09002 * 109.47113 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47271 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46988 * 95.92059 * 9 8 7 38 38 H 1.08999 * 109.46740 * 215.91038 * 9 8 7 39 39 H 1.08992 * 109.47509 * 335.91313 * 9 8 7 40 40 H 1.09002 * 109.47497 * 300.00472 * 12 10 8 41 41 H 1.09006 * 109.46986 * 60.00431 * 12 10 8 42 42 H 1.09002 * 109.46851 * 300.00416 * 13 12 10 43 43 H 1.09006 * 109.47107 * 60.00053 * 13 12 10 44 44 H 0.97002 * 120.00835 * 179.97438 * 17 16 14 45 45 H 1.09006 * 109.47332 * 300.00543 * 22 7 6 46 46 H 1.09000 * 109.47546 * 180.02562 * 22 7 6 47 47 H 1.08997 * 109.47464 * 299.99921 * 23 4 2 48 48 H 1.09006 * 109.47114 * 60.00230 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5699 -0.7207 1.2497 6 6 4.0799 -1.4413 2.4993 7 6 3.5704 -2.8840 2.4997 8 7 4.0592 -3.5749 1.3039 9 6 3.1077 -4.1477 0.3485 10 6 5.3843 -3.6833 1.0826 11 8 6.1719 -3.2093 1.8737 12 6 5.8871 -4.3935 -0.1477 13 6 7.4170 -4.3760 -0.1573 14 6 7.9199 -5.0856 -1.3880 15 1 7.2184 -5.5067 -2.0930 16 6 9.2753 -5.1965 -1.6144 17 7 9.7142 -5.8162 -2.6881 18 14 10.4885 -4.4676 -0.3953 19 1 10.8288 -5.4842 0.6324 20 1 11.7225 -4.0553 -1.1112 21 1 9.8789 -3.2838 0.2622 22 6 2.0404 -2.8845 2.4993 23 6 1.5299 -2.1637 1.2494 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -0.2073 2.1393 32 1 3.9337 -1.2344 0.3597 33 1 3.9329 0.3071 1.2498 34 1 3.7161 -0.9273 3.3890 35 1 5.1699 -1.4413 2.4994 36 1 3.9333 -3.3973 3.3902 37 1 2.9386 -3.4410 -0.4640 38 1 3.5126 -5.0756 -0.0555 39 1 2.1641 -4.3528 0.8540 40 1 5.5360 -5.4254 -0.1407 41 1 5.5120 -3.8881 -1.0377 42 1 7.7684 -3.3442 -0.1642 43 1 7.7917 -4.8816 0.7327 44 1 10.6678 -5.8939 -2.8476 45 1 1.6766 -2.3704 3.3891 46 1 1.6774 -3.9123 2.5000 47 1 0.4399 -2.1637 1.2493 48 1 1.8934 -2.6776 0.3595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360473800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -54.555540 kcal Electronic energy + Delta-G solvation = -23638.642784 eV Core-core repulsion = 20499.868874 eV Total energy + Delta-G solvation = -3138.773910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64408 -38.39302 -35.95176 -33.69819 -33.16582 -31.31864 -31.16915 -29.38669 -27.42998 -26.46239 -25.87847 -23.02562 -22.46350 -21.43147 -19.96438 -19.70996 -18.37128 -17.07396 -16.36361 -16.09342 -15.61194 -15.11867 -14.48808 -14.38666 -14.05008 -14.00000 -13.64598 -13.34922 -13.15224 -13.12012 -12.57755 -12.45293 -12.42290 -12.34421 -12.00967 -11.94415 -11.75247 -11.37740 -11.33226 -11.21594 -10.99233 -10.93179 -10.89008 -10.32179 -10.11964 -10.08084 -9.99582 -9.92179 -9.73064 -9.16153 -8.96201 -8.48953 -8.33931 -6.00952 -3.99373 3.17866 3.28557 3.39509 3.45967 3.57318 4.46761 4.51421 4.53004 4.62262 4.80457 4.90574 5.02297 5.14610 5.21848 5.26264 5.31390 5.34691 5.41108 5.43936 5.45935 5.48440 5.52633 5.59314 5.64163 5.67202 5.71199 5.77676 5.79697 5.89182 5.95658 6.05497 6.09131 6.10038 6.14162 6.17654 6.20315 6.31010 6.40033 6.48262 6.72133 6.88002 7.40280 7.47338 7.71775 7.83167 8.52701 8.71549 9.02322 9.62455 11.11943 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.003979 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.102815 B = 7035.439361 C = 7218.933863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.078 4.078 5 C -0.110 4.110 6 C -0.137 4.137 7 C 0.152 3.848 8 N -0.618 5.618 9 C 0.072 3.928 10 C 0.512 3.488 11 O -0.538 6.538 12 C -0.120 4.120 13 C 0.002 3.998 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.124 4.124 23 C -0.144 4.144 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.263 0.737 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 10.086 8.286 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.096 4.096 5 C -0.148 4.148 6 C -0.175 4.175 7 C 0.049 3.951 8 N -0.354 5.354 9 C -0.071 4.071 10 C 0.302 3.698 11 O -0.414 6.414 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.162 4.162 23 C -0.180 4.180 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.045 10.290 8.622 24.962 hybrid contribution 0.603 0.298 0.526 0.854 sum -20.442 10.587 9.148 24.772 Atomic orbital electron populations 1.21889 0.95560 1.01685 1.01346 1.21139 0.95372 0.96165 0.98425 1.21893 1.01487 0.95994 1.01291 1.21169 0.95614 0.95371 0.97459 1.21551 0.94452 1.00101 0.98690 1.21950 1.03273 0.94463 0.97846 1.20893 0.93246 0.92940 0.88035 1.48025 1.06197 1.57326 1.23821 1.22084 0.93895 0.98452 0.92654 1.21438 0.80754 0.79270 0.88355 1.90601 1.54947 1.48003 1.47862 1.21680 1.00764 0.99858 0.93685 1.19363 0.89115 0.97715 0.97389 1.21120 0.92692 1.35961 1.06366 0.90998 1.24962 0.98430 0.94640 0.95181 1.69911 1.14436 1.43158 1.26843 0.86803 0.80550 0.80714 0.81530 1.20269 1.21474 1.18533 1.21817 0.94403 1.00762 0.99185 1.22315 1.00222 0.96042 0.99453 0.92999 0.93043 0.92424 0.91253 0.92237 0.93019 0.92983 0.91768 0.91845 0.92123 0.91937 0.89481 0.91403 0.92373 0.91177 0.90388 0.89846 0.89874 0.95919 0.96372 0.92755 0.90899 0.91395 0.91916 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.79 2.51 -90.62 -0.23 -1.02 16 3 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 4 C -0.08 -0.71 1.77 -90.62 -0.16 -0.87 16 5 C -0.11 -1.28 4.69 -26.73 -0.13 -1.41 16 6 C -0.14 -1.76 5.23 -26.73 -0.14 -1.90 16 7 C 0.15 1.87 2.94 -67.93 -0.20 1.67 16 8 N -0.62 -8.57 2.25 -173.94 -0.39 -8.96 16 9 C 0.07 0.76 8.00 59.85 0.48 1.24 16 10 C 0.51 9.49 7.38 -10.99 -0.08 9.40 16 11 O -0.54 -11.87 14.03 5.56 0.08 -11.79 16 12 C -0.12 -2.38 4.27 -27.88 -0.12 -2.50 16 13 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 18 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 22 C -0.12 -1.10 4.91 -26.71 -0.13 -1.23 16 23 C -0.14 -1.20 4.20 -26.71 -0.11 -1.31 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.86 7.61 -51.93 -0.39 0.46 16 33 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.43 6.11 -51.93 -0.32 1.11 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.57 6.70 -51.93 -0.35 0.23 16 38 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 39 H 0.08 0.64 4.95 -51.93 -0.26 0.39 16 40 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 41 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 43 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.55 6.89 -51.93 -0.36 0.19 16 47 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 48 H 0.09 0.78 3.67 -51.93 -0.19 0.59 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.84 348.62 -8.15 -40.99 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.51 Total: -3.07 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.68 Total: -13.14 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.38 Total: -36.42 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.84 -8.15 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360473800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.569 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds