Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52535 * 109.47552 * 2 1 4 4 C 1.54295 * 108.56480 * 55.05500 * 3 2 1 5 5 C 1.53006 * 109.47110 * 55.81631 * 4 3 2 6 6 C 1.49394 * 112.98264 * 294.35132 * 3 2 1 7 7 C 1.53872 * 114.53892 * 333.22627 * 6 3 2 8 8 C 1.55629 * 111.26004 * 302.13839 * 7 6 3 9 9 N 1.43396 * 114.60003 * 337.19480 * 8 7 6 10 10 C 1.35395 * 119.40350 * 262.26347 * 9 8 7 11 11 O 1.21279 * 120.00768 * 180.41771 * 10 9 8 12 12 C 1.50701 * 119.99864 * 0.41211 * 10 9 8 13 13 C 1.52999 * 109.47652 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47652 * 179.97438 * 13 12 10 15 15 H 1.08009 * 119.99366 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00433 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99508 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47233 * 90.00372 * 18 16 14 20 20 H 1.48505 * 109.47120 * 209.99689 * 18 16 14 21 21 H 1.48497 * 109.47358 * 329.99915 * 18 16 14 22 22 C 1.49159 * 120.45707 * 82.67858 * 9 8 7 23 23 C 1.43610 * 113.53116 * 286.90319 * 22 9 8 24 24 H 1.08991 * 109.47045 * 180.14348 * 1 2 3 25 25 H 1.09003 * 109.46886 * 300.14768 * 1 2 3 26 26 H 1.09004 * 109.46902 * 60.14421 * 1 2 3 27 27 H 1.08994 * 109.47384 * 239.99796 * 2 1 3 28 28 H 1.09000 * 109.47363 * 119.99783 * 2 1 3 29 29 H 1.08996 * 109.47398 * 175.81554 * 4 3 2 30 30 H 1.09004 * 109.47164 * 295.82091 * 4 3 2 31 31 H 1.09000 * 109.46964 * 180.87843 * 5 4 3 32 32 H 1.09004 * 109.46675 * 300.87648 * 5 4 3 33 33 H 1.08992 * 109.46758 * 60.87477 * 5 4 3 34 34 H 1.09633 * 108.88898 * 210.79092 * 6 3 2 35 35 H 1.09877 * 108.48080 * 94.80733 * 6 3 2 36 36 H 1.09871 * 108.84900 * 183.54679 * 7 6 3 37 37 H 1.08597 * 111.39751 * 64.94242 * 7 6 3 38 38 H 1.09150 * 107.49153 * 217.18160 * 8 7 6 39 39 H 1.08303 * 109.04333 * 100.10321 * 8 7 6 40 40 H 1.09006 * 109.47405 * 300.00747 * 12 10 9 41 41 H 1.09009 * 109.46797 * 60.00254 * 12 10 9 42 42 H 1.08996 * 109.47156 * 300.00656 * 13 12 10 43 43 H 1.09000 * 109.46668 * 60.00113 * 13 12 10 44 44 H 0.97006 * 119.99847 * 180.02562 * 17 16 14 45 45 H 1.10515 * 108.44257 * 165.06397 * 22 9 8 46 46 H 1.10138 * 108.98962 * 50.27029 * 22 9 8 47 47 H 1.10220 * 108.45809 * 173.17259 * 23 22 9 48 48 H 1.10087 * 108.73273 * 287.13414 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0386 1.4381 0.0000 4 6 1.4125 2.1805 1.1989 5 6 1.7322 1.4247 2.4903 6 6 1.6984 2.1771 -1.2530 7 6 1.5212 1.2841 -2.4935 8 6 2.8043 0.4501 -2.7764 9 7 4.0076 0.9998 -2.2231 10 6 4.8246 1.7381 -3.0108 11 8 5.8489 2.2019 -2.5562 12 6 4.4614 1.9836 -4.4526 13 6 5.5445 2.8388 -5.1131 14 6 5.1816 3.0838 -6.5551 15 1 4.2692 2.6711 -6.9598 16 6 6.0141 3.8347 -7.3576 17 7 7.1252 4.3368 -6.8647 18 14 5.5637 4.1388 -9.1447 19 1 4.7553 5.3803 -9.2471 20 1 6.8032 4.2876 -9.9491 21 1 4.7749 2.9906 -9.6588 22 6 4.3641 0.7548 -0.7956 23 6 3.5535 1.4923 0.1325 24 1 -0.3633 -1.0276 0.0026 25 1 -0.3633 0.5161 0.8887 26 1 -0.3633 0.5116 -0.8913 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8231 3.1885 1.2568 30 1 0.3317 2.2354 1.0682 31 1 1.2768 1.9407 3.3355 32 1 1.3350 0.4117 2.4261 33 1 2.8125 1.3834 2.6290 34 1 2.4824 2.9169 -1.4526 35 1 0.7672 2.7359 -1.0859 36 1 1.3377 1.9236 -3.3679 37 1 0.6686 0.6202 -2.3853 38 1 2.9267 0.3935 -3.8595 39 1 2.6627 -0.5552 -2.3990 40 1 4.3829 1.0301 -4.9750 41 1 3.5054 2.5051 -4.5027 42 1 5.6234 3.7923 -4.5908 43 1 6.5002 2.3170 -5.0630 44 1 7.7108 4.8654 -7.4292 45 1 5.4263 1.0229 -0.6496 46 1 4.2951 -0.3248 -0.5891 47 1 3.8013 1.1593 1.1536 48 1 3.8478 2.5525 0.0942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360487464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -59.743153 kcal Electronic energy + Delta-G solvation = -23749.215813 eV Core-core repulsion = 20610.216951 eV Total energy + Delta-G solvation = -3138.998862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63318 -38.56085 -35.36537 -33.61332 -32.92420 -31.56636 -30.96460 -30.51669 -27.32778 -25.79010 -25.27841 -23.42390 -22.74884 -21.70642 -20.67171 -18.19231 -18.01510 -16.97100 -16.39447 -15.74768 -15.66811 -15.53257 -14.85308 -14.42993 -14.33968 -13.90383 -13.57019 -13.36827 -12.90916 -12.81257 -12.71295 -12.30922 -12.20285 -12.00826 -11.92625 -11.86791 -11.53785 -11.41224 -11.19366 -11.04461 -10.91335 -10.84258 -10.63279 -10.52836 -10.17817 -10.13937 -10.07849 -9.89239 -9.54385 -9.12565 -8.90139 -8.34555 -8.27312 -5.93862 -3.98110 3.23923 3.34501 3.36950 3.41039 3.43784 4.47134 4.49376 4.51577 4.67217 4.86459 4.98049 5.03946 5.06391 5.14238 5.25133 5.26636 5.38399 5.41027 5.44003 5.49073 5.56083 5.59096 5.68593 5.73609 5.78172 5.86858 5.90827 5.91911 5.94085 5.95456 6.04643 6.12225 6.20411 6.25229 6.26619 6.28848 6.34751 6.38370 6.50539 6.88883 6.95943 7.76799 7.87458 7.89474 8.09913 8.41372 8.80803 9.10502 9.65241 11.17120 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.003724 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.332072 B = 7517.924527 C = 7886.681098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.041 4.041 4 C -0.116 4.116 5 C -0.157 4.157 6 C -0.104 4.104 7 C -0.137 4.137 8 C 0.108 3.892 9 N -0.614 5.614 10 C 0.512 3.488 11 O -0.534 6.534 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.122 3.878 23 C -0.129 4.129 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 -9.832 16.517 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.041 4.041 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.141 4.141 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.350 5.350 10 C 0.302 3.698 11 O -0.409 6.409 12 C -0.167 4.167 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.000 4.000 23 C -0.167 4.167 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.155 -9.452 16.718 23.858 hybrid contribution -0.310 0.297 -0.944 1.038 sum -14.466 -9.155 15.773 23.278 Atomic orbital electron populations 1.21931 0.96100 1.01150 1.02108 1.21600 0.95785 0.95723 1.02279 1.19710 0.94174 0.95431 0.94821 1.21966 1.00475 0.98851 0.94026 1.21918 1.01682 1.00660 0.97104 1.21201 1.01522 0.98075 0.93320 1.22687 0.97621 0.99292 0.98000 1.21239 0.84747 0.96144 0.99584 1.48008 1.22312 1.54253 1.10387 1.21785 0.82695 0.76057 0.89236 1.90640 1.25505 1.49038 1.75699 1.21877 1.03103 1.02310 0.89411 1.18903 0.92493 0.94608 0.94037 1.21220 1.06913 1.32674 0.95587 0.92654 1.25022 0.95022 0.95842 0.98505 1.70005 1.11970 1.34821 1.36057 0.86599 0.77825 0.78546 0.85025 1.20694 1.21242 1.19883 1.20062 1.00226 0.99133 0.80563 1.20392 0.94807 1.02049 0.99443 0.93294 0.92596 0.92259 0.91089 0.92058 0.92266 0.91646 0.93232 0.92287 0.92487 0.91917 0.92997 0.91929 0.90867 0.90266 0.91608 0.90346 0.90348 0.95926 0.95886 0.92987 0.89545 0.92390 0.91491 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.89 37.16 0.33 -0.81 16 2 C -0.12 -0.96 3.65 -26.97 -0.10 -1.05 16 3 C -0.04 -0.39 0.22 -156.27 -0.04 -0.42 16 4 C -0.12 -0.99 4.10 -26.05 -0.11 -1.10 16 5 C -0.16 -1.18 9.06 37.16 0.34 -0.84 16 6 C -0.10 -1.14 3.95 -28.06 -0.11 -1.25 16 7 C -0.14 -1.44 5.34 -24.88 -0.13 -1.57 16 8 C 0.11 1.28 4.97 -4.28 -0.02 1.25 16 9 N -0.61 -9.14 2.27 -176.20 -0.40 -9.54 16 10 C 0.51 10.19 7.69 -10.71 -0.08 10.11 16 11 O -0.53 -12.85 15.39 5.56 0.09 -12.77 16 12 C -0.13 -2.65 4.04 -27.88 -0.11 -2.77 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 1.57 5.24 -6.90 -0.04 1.53 16 23 C -0.13 -1.43 3.63 -31.48 -0.11 -1.55 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.40 5.95 -51.93 -0.31 0.09 16 26 H 0.06 0.45 5.86 -51.93 -0.30 0.14 16 27 H 0.07 0.61 4.41 -51.93 -0.23 0.39 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 6.40 -51.93 -0.33 0.20 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 5.99 -51.93 -0.31 0.10 16 33 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 34 H 0.06 0.87 7.07 -51.57 -0.36 0.51 16 35 H 0.05 0.53 7.63 -51.43 -0.39 0.14 16 36 H 0.06 0.70 8.21 -51.43 -0.42 0.28 16 37 H 0.07 0.63 5.76 -52.15 -0.30 0.33 16 38 H 0.08 0.97 5.90 -51.84 -0.31 0.67 16 39 H 0.07 0.65 6.27 -52.32 -0.33 0.33 16 40 H 0.08 1.50 7.35 -51.93 -0.38 1.12 16 41 H 0.08 1.52 8.10 -51.92 -0.42 1.10 16 42 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.09 1.31 7.15 -51.06 -0.36 0.94 16 46 H 0.06 0.63 8.18 -51.28 -0.42 0.21 16 47 H 0.07 0.64 6.01 -51.23 -0.31 0.33 16 48 H 0.06 0.79 7.74 -51.31 -0.40 0.39 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -32.93 344.95 -8.32 -41.25 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -8.21 Total: -2.65 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.71 Total: -11.34 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.34 Total: -36.49 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.93 -8.32 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360487464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds