Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52535 * 109.47552 * 2 1 4 4 C 1.54295 * 108.56480 * 55.05500 * 3 2 1 5 5 C 1.53006 * 109.47110 * 55.81631 * 4 3 2 6 6 C 1.49394 * 112.98264 * 294.35132 * 3 2 1 7 7 C 1.53872 * 114.53892 * 333.22627 * 6 3 2 8 8 C 1.55629 * 111.26004 * 302.13839 * 7 6 3 9 9 N 1.43396 * 114.60003 * 337.19480 * 8 7 6 10 10 C 1.35395 * 119.40350 * 262.26347 * 9 8 7 11 11 O 1.21279 * 120.00768 * 180.41771 * 10 9 8 12 12 C 1.50701 * 119.99864 * 0.41211 * 10 9 8 13 13 C 1.52999 * 109.47652 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47652 * 179.97438 * 13 12 10 15 15 H 1.08009 * 119.99366 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00433 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99508 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47233 * 90.00372 * 18 16 14 20 20 H 1.48505 * 109.47120 * 209.99689 * 18 16 14 21 21 H 1.48497 * 109.47358 * 329.99915 * 18 16 14 22 22 C 1.49159 * 120.45707 * 82.67858 * 9 8 7 23 23 C 1.43610 * 113.53116 * 286.90319 * 22 9 8 24 24 H 1.08991 * 109.47045 * 180.14348 * 1 2 3 25 25 H 1.09003 * 109.46886 * 300.14768 * 1 2 3 26 26 H 1.09004 * 109.46902 * 60.14421 * 1 2 3 27 27 H 1.08994 * 109.47384 * 239.99796 * 2 1 3 28 28 H 1.09000 * 109.47363 * 119.99783 * 2 1 3 29 29 H 1.08996 * 109.47398 * 175.81554 * 4 3 2 30 30 H 1.09004 * 109.47164 * 295.82091 * 4 3 2 31 31 H 1.09000 * 109.46964 * 180.87843 * 5 4 3 32 32 H 1.09004 * 109.46675 * 300.87648 * 5 4 3 33 33 H 1.08992 * 109.46758 * 60.87477 * 5 4 3 34 34 H 1.09633 * 108.88898 * 210.79092 * 6 3 2 35 35 H 1.09877 * 108.48080 * 94.80733 * 6 3 2 36 36 H 1.09871 * 108.84900 * 183.54679 * 7 6 3 37 37 H 1.08597 * 111.39751 * 64.94242 * 7 6 3 38 38 H 1.09150 * 107.49153 * 217.18160 * 8 7 6 39 39 H 1.08303 * 109.04333 * 100.10321 * 8 7 6 40 40 H 1.09006 * 109.47405 * 300.00747 * 12 10 9 41 41 H 1.09009 * 109.46797 * 60.00254 * 12 10 9 42 42 H 1.08996 * 109.47156 * 300.00656 * 13 12 10 43 43 H 1.09000 * 109.46668 * 60.00113 * 13 12 10 44 44 H 0.97006 * 119.99847 * 180.02562 * 17 16 14 45 45 H 1.10515 * 108.44257 * 165.06397 * 22 9 8 46 46 H 1.10138 * 108.98962 * 50.27029 * 22 9 8 47 47 H 1.10220 * 108.45809 * 173.17259 * 23 22 9 48 48 H 1.10087 * 108.73273 * 287.13414 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0386 1.4381 0.0000 4 6 1.4125 2.1805 1.1989 5 6 1.7322 1.4247 2.4903 6 6 1.6984 2.1771 -1.2530 7 6 1.5212 1.2841 -2.4935 8 6 2.8043 0.4501 -2.7764 9 7 4.0076 0.9998 -2.2231 10 6 4.8246 1.7381 -3.0108 11 8 5.8489 2.2019 -2.5562 12 6 4.4614 1.9836 -4.4526 13 6 5.5445 2.8388 -5.1131 14 6 5.1816 3.0838 -6.5551 15 1 4.2692 2.6711 -6.9598 16 6 6.0141 3.8347 -7.3576 17 7 7.1252 4.3368 -6.8647 18 14 5.5637 4.1388 -9.1447 19 1 4.7553 5.3803 -9.2471 20 1 6.8032 4.2876 -9.9491 21 1 4.7749 2.9906 -9.6588 22 6 4.3641 0.7548 -0.7956 23 6 3.5535 1.4923 0.1325 24 1 -0.3633 -1.0276 0.0026 25 1 -0.3633 0.5161 0.8887 26 1 -0.3633 0.5116 -0.8913 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8231 3.1885 1.2568 30 1 0.3317 2.2354 1.0682 31 1 1.2768 1.9407 3.3355 32 1 1.3350 0.4117 2.4261 33 1 2.8125 1.3834 2.6290 34 1 2.4824 2.9169 -1.4526 35 1 0.7672 2.7359 -1.0859 36 1 1.3377 1.9236 -3.3679 37 1 0.6686 0.6202 -2.3853 38 1 2.9267 0.3935 -3.8595 39 1 2.6627 -0.5552 -2.3990 40 1 4.3829 1.0301 -4.9750 41 1 3.5054 2.5051 -4.5027 42 1 5.6234 3.7923 -4.5908 43 1 6.5002 2.3170 -5.0630 44 1 7.7108 4.8654 -7.4292 45 1 5.4263 1.0229 -0.6496 46 1 4.2951 -0.3248 -0.5891 47 1 3.8013 1.1593 1.1536 48 1 3.8478 2.5525 0.0942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360487464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -78.681451 kcal Electronic energy + Delta-G solvation = -23750.037039 eV Core-core repulsion = 20610.216951 eV Total energy + Delta-G solvation = -3139.820088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71094 -39.88763 -36.58595 -35.64072 -34.05902 -33.01587 -32.05010 -31.54732 -28.50190 -27.52928 -26.26465 -24.34543 -24.07459 -22.78016 -22.12540 -19.55435 -18.93368 -18.70903 -17.72990 -17.21820 -16.83330 -16.52130 -16.39038 -15.82326 -15.59527 -15.18964 -14.65073 -14.34041 -14.19689 -14.18627 -13.81948 -13.43744 -13.40088 -13.21105 -13.07498 -12.82198 -12.70954 -12.63557 -12.48897 -12.34502 -12.23462 -11.93966 -11.92970 -11.65244 -11.60279 -11.41472 -11.31563 -11.03262 -10.91164 -10.86923 -10.57831 -10.48434 -9.57825 -8.18598 -6.33092 1.41370 1.44524 1.55517 1.67723 2.07279 2.42942 3.14185 3.56802 3.71557 3.81319 3.92538 4.04935 4.15428 4.17870 4.31916 4.40887 4.43548 4.48796 4.55701 4.61903 4.63095 4.68144 4.70309 4.75394 4.84475 4.94234 5.01367 5.07392 5.10329 5.12703 5.14353 5.20192 5.24189 5.25955 5.34016 5.45842 5.46946 5.48608 5.58105 5.59066 5.60633 5.73943 5.82086 5.84235 6.16499 6.49305 6.84988 7.28619 7.37332 8.94250 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.003724 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.332072 B = 7517.924527 C = 7886.681098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.035 4.035 4 C -0.114 4.114 5 C -0.154 4.154 6 C -0.102 4.102 7 C -0.131 4.131 8 C 0.096 3.904 9 N -0.599 5.599 10 C 0.508 3.492 11 O -0.590 6.590 12 C -0.114 4.114 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.121 3.879 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.097 0.903 42 H -0.022 1.022 43 H -0.019 1.019 44 H 0.263 0.737 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.200 -12.030 16.340 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.035 4.035 4 C -0.151 4.151 5 C -0.211 4.211 6 C -0.140 4.140 7 C -0.169 4.169 8 C -0.028 4.028 9 N -0.332 5.332 10 C 0.299 3.701 11 O -0.470 6.470 12 C -0.153 4.153 13 C 0.007 3.993 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.177 1.177 22 C 0.001 3.999 23 C -0.163 4.163 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.115 0.885 42 H -0.004 1.004 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -17.510 -11.694 16.565 26.790 hybrid contribution 0.700 0.974 -0.796 1.439 sum -16.810 -10.720 15.768 25.419 Atomic orbital electron populations 1.21912 0.95059 1.01909 1.02212 1.21582 0.96617 0.94038 1.02779 1.19682 0.92578 0.96792 0.94417 1.21947 1.00855 0.98086 0.94249 1.21898 1.01488 1.01148 0.96551 1.21199 1.00531 0.97772 0.94469 1.22676 0.97673 0.99341 0.97258 1.21591 0.83746 0.97790 0.99659 1.47952 1.22308 1.52059 1.10842 1.21594 0.82674 0.76498 0.89376 1.90619 1.28120 1.51754 1.76550 1.21617 1.01234 1.02309 0.90170 1.18677 0.92956 0.93182 0.94507 1.21692 1.07610 1.32673 0.96035 0.90607 1.26160 0.94684 0.95344 1.04289 1.70191 1.13522 1.35781 1.38329 0.85300 0.77702 0.79190 0.77932 1.19709 1.21130 1.17739 1.20238 0.98976 1.01276 0.79435 1.20352 0.96150 0.99817 0.99977 0.92212 0.92295 0.92419 0.91093 0.91044 0.93855 0.90624 0.92632 0.91143 0.92953 0.95813 0.92095 0.92760 0.87921 0.90384 0.88394 0.87944 0.88529 1.00359 1.00025 0.92853 0.92507 0.88974 0.89420 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.89 71.98 0.64 -0.97 16 2 C -0.11 -1.42 3.65 30.44 0.11 -1.31 16 3 C -0.03 -0.59 0.22 -53.32 -0.01 -0.60 16 4 C -0.11 -1.75 4.10 31.04 0.13 -1.62 16 5 C -0.15 -1.94 9.06 71.98 0.65 -1.29 16 6 C -0.10 -2.13 3.95 29.74 0.12 -2.01 16 7 C -0.13 -2.42 5.34 31.80 0.17 -2.25 16 8 C 0.10 2.02 4.97 87.86 0.44 2.46 16 9 N -0.60 -17.61 2.27 -829.40 -1.88 -19.49 16 10 C 0.51 21.06 7.69 87.56 0.67 21.74 16 11 O -0.59 -30.61 15.39 -3.03 -0.05 -30.65 16 12 C -0.11 -4.84 4.04 29.85 0.12 -4.72 16 13 C 0.04 2.56 4.26 29.85 0.13 2.69 16 14 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 15 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 16 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 17 N -0.94 -60.60 13.29 21.45 0.28 -60.32 16 18 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 22 C 0.12 3.08 5.24 83.06 0.44 3.52 16 23 C -0.13 -2.72 3.63 27.52 0.10 -2.62 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.60 5.95 -2.39 -0.01 0.59 16 26 H 0.06 0.63 5.86 -2.39 -0.01 0.62 16 27 H 0.07 0.90 4.41 -2.39 -0.01 0.89 16 28 H 0.07 0.80 6.57 -2.39 -0.02 0.79 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.03 6.40 -2.38 -0.02 1.01 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.74 5.99 -2.38 -0.01 0.73 16 33 H 0.05 0.71 6.32 -2.39 -0.02 0.69 16 34 H 0.02 0.67 7.07 -2.05 -0.01 0.66 16 35 H 0.06 1.16 7.63 -1.92 -0.01 1.14 16 36 H 0.05 1.11 8.21 -1.92 -0.02 1.09 16 37 H 0.10 1.35 5.76 -2.60 -0.01 1.33 16 38 H 0.08 1.71 5.90 -2.31 -0.01 1.70 16 39 H 0.10 1.53 6.27 -2.75 -0.02 1.51 16 40 H 0.10 3.84 7.35 -2.38 -0.02 3.82 16 41 H 0.10 3.73 8.10 -2.38 -0.02 3.71 16 42 H -0.02 -1.45 8.10 -2.39 -0.02 -1.46 16 43 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 44 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 45 H 0.06 1.80 7.15 -1.57 -0.01 1.79 16 46 H 0.09 1.77 8.18 -1.78 -0.01 1.75 16 47 H 0.09 1.57 6.01 -1.73 -0.01 1.55 16 48 H 0.03 0.77 7.74 -1.81 -0.01 0.76 16 Total: -1.00 -76.85 344.95 5.73 -71.12 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.95 Total: 10.74 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.39 Total: -18.27 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.60 Total: -79.81 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -76.85 5.73 -71.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360487464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds