Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00266 * 2 1 3 5 5 C 1.53008 * 109.47301 * 86.72541 * 4 2 1 6 6 C 1.52996 * 109.44981 * 185.92744 * 5 4 2 7 7 C 1.53043 * 109.45997 * 65.95644 * 5 4 2 8 8 C 1.53193 * 109.31033 * 178.61551 * 7 5 4 9 9 N 1.46923 * 108.77456 * 54.64192 * 8 7 5 10 10 C 1.34772 * 120.63303 * 126.36471 * 9 8 7 11 11 O 1.21286 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00174 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47270 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47295 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00463 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99991 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47152 * 89.99693 * 18 16 14 20 20 H 1.48496 * 109.47219 * 210.00043 * 18 16 14 21 21 H 1.48502 * 109.46942 * 330.00040 * 18 16 14 22 22 C 1.46927 * 118.73742 * 306.38891 * 9 8 7 23 23 C 1.53044 * 109.45575 * 305.89561 * 5 4 2 24 24 H 1.09007 * 109.46875 * 307.05158 * 1 2 3 25 25 H 1.08999 * 109.47111 * 67.05446 * 1 2 3 26 26 H 1.08999 * 109.47411 * 187.05797 * 1 2 3 27 27 H 1.09006 * 109.46714 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.47019 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47379 * 300.00090 * 3 2 1 30 30 H 1.09003 * 109.46789 * 60.00535 * 3 2 1 31 31 H 1.08994 * 109.47531 * 326.72367 * 4 2 1 32 32 H 1.09002 * 109.47078 * 206.71845 * 4 2 1 33 33 H 1.08990 * 109.47306 * 300.31669 * 6 5 4 34 34 H 1.08997 * 109.46738 * 60.31916 * 6 5 4 35 35 H 1.09000 * 109.46853 * 180.31692 * 6 5 4 36 36 H 1.09008 * 109.49251 * 58.66749 * 7 5 4 37 37 H 1.08992 * 109.49917 * 298.57044 * 7 5 4 38 38 H 1.08998 * 109.58408 * 174.42530 * 8 7 5 39 39 H 1.09001 * 109.58657 * 294.85183 * 8 7 5 40 40 H 1.09000 * 109.46759 * 299.99914 * 12 10 9 41 41 H 1.08997 * 109.46999 * 60.00180 * 12 10 9 42 42 H 1.09002 * 109.46640 * 299.99911 * 13 12 10 43 43 H 1.09004 * 109.47337 * 59.99478 * 13 12 10 44 44 H 0.96996 * 120.00553 * 180.02562 * 17 16 14 45 45 H 1.08997 * 109.58812 * 293.81852 * 22 9 8 46 46 H 1.09003 * 109.58989 * 173.39839 * 22 9 8 47 47 H 1.09005 * 109.49456 * 301.33638 * 23 5 4 48 48 H 1.09002 * 109.49978 * 61.43343 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.1323 -2.2227 0.9693 6 6 2.4996 -2.9597 2.2588 7 6 3.2082 -2.4789 -0.0886 8 6 3.3218 -3.9856 -0.3410 9 7 1.9941 -4.5077 -0.6920 10 6 1.8126 -5.2186 -1.8225 11 8 2.7504 -5.4332 -2.5611 12 6 0.4446 -5.7480 -2.1684 13 6 0.5135 -6.5137 -3.4912 14 6 -0.8545 -7.0425 -3.8373 15 1 -1.6896 -6.8519 -3.1795 16 6 -1.0402 -7.7697 -4.9940 17 7 -0.0236 -8.0015 -5.7954 18 14 -2.7359 -8.4258 -5.4227 19 1 -3.4658 -7.4185 -6.2338 20 1 -2.5980 -9.6827 -6.2014 21 1 -3.4918 -8.6975 -4.1737 22 6 0.8678 -4.2396 0.2126 23 6 0.7817 -2.7301 0.4589 24 1 -0.3633 0.6193 0.8202 25 1 -0.3633 0.4006 -0.9463 26 1 -0.3634 -1.0198 0.1263 27 1 1.8932 -0.5139 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.3512 -0.5476 2.0758 32 1 3.0265 -0.3394 1.5119 33 1 3.4585 -2.5940 2.6258 34 1 1.7308 -2.7814 3.0106 35 1 2.5710 -4.0288 2.0585 36 1 4.1653 -2.0962 0.2659 37 1 2.9347 -1.9744 -1.0152 38 1 4.0147 -4.1672 -1.1626 39 1 3.6827 -4.4809 0.5604 40 1 0.1038 -6.4175 -1.3787 41 1 -0.2529 -4.9161 -2.2656 42 1 0.8545 -5.8444 -4.2810 43 1 1.2110 -7.3456 -3.3936 44 1 -0.1542 -8.5127 -6.6093 45 1 1.0285 -4.7557 1.1591 46 1 -0.0585 -4.5889 -0.2436 47 1 0.0117 -2.5262 1.2030 48 1 0.5311 -2.2232 -0.4730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360595253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -67.482941 kcal Electronic energy + Delta-G solvation = -23339.512214 eV Core-core repulsion = 20200.177730 eV Total energy + Delta-G solvation = -3139.334484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49850 -38.49953 -35.80495 -33.52085 -33.27570 -31.56237 -30.59145 -28.36979 -27.38507 -26.95493 -25.69464 -23.37014 -23.23623 -21.32056 -20.45429 -19.26248 -17.80421 -16.90921 -15.94637 -15.52024 -15.43559 -15.21084 -14.93959 -14.43163 -14.33937 -14.04362 -13.81396 -13.31499 -13.17695 -12.93226 -12.45840 -12.37207 -12.16931 -12.10336 -11.99375 -11.85758 -11.68722 -11.56053 -11.29213 -11.09712 -10.91687 -10.89962 -10.81175 -10.58062 -10.40979 -10.20924 -10.15928 -9.92636 -9.56503 -9.13356 -8.93052 -8.32820 -8.24900 -5.93803 -3.98104 3.27955 3.34550 3.37078 3.41125 3.43866 4.44618 4.48615 4.50421 4.59174 4.83061 4.87281 4.94416 5.08745 5.17289 5.28133 5.30972 5.41037 5.41089 5.44142 5.47872 5.53363 5.58457 5.64669 5.66148 5.68744 5.73602 5.77680 5.81681 5.89095 5.94101 5.95388 6.07330 6.11659 6.18693 6.19751 6.23041 6.25597 6.26551 6.42133 6.82296 6.96620 7.76938 7.84066 7.89656 8.10089 8.41433 8.81602 9.10580 9.65226 11.17191 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.003667 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.425771 B = 7634.853016 C = 8103.906710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.059 4.059 6 C -0.146 4.146 7 C -0.123 4.123 8 C 0.109 3.891 9 N -0.622 5.622 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.105 3.895 23 C -0.131 4.131 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 16.460 18.085 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.120 4.120 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.059 4.059 6 C -0.203 4.203 7 C -0.162 4.162 8 C -0.013 4.013 9 N -0.358 5.358 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.018 4.018 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.947 16.234 17.500 24.195 hybrid contribution -0.931 -0.257 -0.192 0.985 sum 3.016 15.978 17.308 23.748 Atomic orbital electron populations 1.22301 0.95305 1.03184 1.01412 1.21221 0.96011 0.95831 0.98949 1.21866 1.00690 0.96348 1.01449 1.21731 1.00997 0.93810 0.97445 1.20529 0.95270 0.94872 0.95211 1.21973 1.01102 1.00808 0.96427 1.22024 0.98580 0.96415 0.99135 1.21501 0.85833 0.93005 1.01008 1.48250 1.08993 1.55179 1.23393 1.21561 0.92524 0.76612 0.79065 1.90651 1.43913 1.57376 1.49262 1.21866 0.91304 1.00702 1.02904 1.18900 0.96862 0.95103 0.89174 1.21221 0.94651 1.33970 1.06604 0.92650 1.25025 0.96681 0.96258 0.96409 1.69995 1.30177 1.39966 1.12706 0.86602 0.84548 0.78422 0.78437 1.20685 1.21238 1.19884 1.21761 0.90374 0.95699 0.93960 1.22332 0.96827 0.95726 1.02037 0.93158 0.93037 0.90676 0.90666 0.92917 0.92920 0.93006 0.91960 0.92077 0.92835 0.92748 0.91981 0.91248 0.91238 0.89342 0.92098 0.90400 0.90383 0.95898 0.95876 0.92972 0.91750 0.89189 0.90800 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.53 37.16 0.32 -1.06 16 2 C -0.10 -0.86 2.33 -90.62 -0.21 -1.07 16 3 C -0.15 -1.13 9.05 37.16 0.34 -0.79 16 4 C -0.10 -0.80 4.06 -26.73 -0.11 -0.91 16 5 C -0.06 -0.51 0.53 -154.46 -0.08 -0.59 16 6 C -0.15 -1.17 7.71 37.16 0.29 -0.88 16 7 C -0.12 -1.28 4.69 -26.61 -0.12 -1.41 16 8 C 0.11 1.43 5.96 -3.71 -0.02 1.41 16 9 N -0.62 -9.33 2.97 -172.77 -0.51 -9.84 16 10 C 0.51 10.27 7.70 -10.99 -0.08 10.18 16 11 O -0.54 -13.04 15.40 5.55 0.09 -12.95 16 12 C -0.13 -2.67 3.99 -27.88 -0.11 -2.78 16 13 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 14 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.11 1.21 5.87 -3.71 -0.02 1.19 16 23 C -0.13 -1.25 3.23 -26.61 -0.09 -1.33 16 24 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.63 4.22 -51.93 -0.22 0.41 16 27 H 0.08 0.75 5.72 -51.93 -0.30 0.45 16 28 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 32 H 0.06 0.46 7.86 -51.93 -0.41 0.06 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.81 6.32 -51.93 -0.33 0.48 16 38 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 39 H 0.06 0.71 6.69 -51.93 -0.35 0.36 16 40 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 41 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.06 0.66 6.70 -51.93 -0.35 0.31 16 46 H 0.09 1.06 5.93 -51.93 -0.31 0.76 16 47 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 48 H 0.08 0.85 5.51 -51.93 -0.29 0.56 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -33.14 354.36 -8.36 -41.49 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.54 Total: -2.94 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.44 Total: -10.92 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.22 Total: -36.80 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.14 -8.36 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360595253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.988 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds