Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00266 * 2 1 3 5 5 C 1.53008 * 109.47301 * 86.72541 * 4 2 1 6 6 C 1.52996 * 109.44981 * 185.92744 * 5 4 2 7 7 C 1.53043 * 109.45997 * 65.95644 * 5 4 2 8 8 C 1.53193 * 109.31033 * 178.61551 * 7 5 4 9 9 N 1.46923 * 108.77456 * 54.64192 * 8 7 5 10 10 C 1.34772 * 120.63303 * 126.36471 * 9 8 7 11 11 O 1.21286 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00174 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47270 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47295 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00463 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99991 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47152 * 89.99693 * 18 16 14 20 20 H 1.48496 * 109.47219 * 210.00043 * 18 16 14 21 21 H 1.48502 * 109.46942 * 330.00040 * 18 16 14 22 22 C 1.46927 * 118.73742 * 306.38891 * 9 8 7 23 23 C 1.53044 * 109.45575 * 305.89561 * 5 4 2 24 24 H 1.09007 * 109.46875 * 307.05158 * 1 2 3 25 25 H 1.08999 * 109.47111 * 67.05446 * 1 2 3 26 26 H 1.08999 * 109.47411 * 187.05797 * 1 2 3 27 27 H 1.09006 * 109.46714 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.47019 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47379 * 300.00090 * 3 2 1 30 30 H 1.09003 * 109.46789 * 60.00535 * 3 2 1 31 31 H 1.08994 * 109.47531 * 326.72367 * 4 2 1 32 32 H 1.09002 * 109.47078 * 206.71845 * 4 2 1 33 33 H 1.08990 * 109.47306 * 300.31669 * 6 5 4 34 34 H 1.08997 * 109.46738 * 60.31916 * 6 5 4 35 35 H 1.09000 * 109.46853 * 180.31692 * 6 5 4 36 36 H 1.09008 * 109.49251 * 58.66749 * 7 5 4 37 37 H 1.08992 * 109.49917 * 298.57044 * 7 5 4 38 38 H 1.08998 * 109.58408 * 174.42530 * 8 7 5 39 39 H 1.09001 * 109.58657 * 294.85183 * 8 7 5 40 40 H 1.09000 * 109.46759 * 299.99914 * 12 10 9 41 41 H 1.08997 * 109.46999 * 60.00180 * 12 10 9 42 42 H 1.09002 * 109.46640 * 299.99911 * 13 12 10 43 43 H 1.09004 * 109.47337 * 59.99478 * 13 12 10 44 44 H 0.96996 * 120.00553 * 180.02562 * 17 16 14 45 45 H 1.08997 * 109.58812 * 293.81852 * 22 9 8 46 46 H 1.09003 * 109.58989 * 173.39839 * 22 9 8 47 47 H 1.09005 * 109.49456 * 301.33638 * 23 5 4 48 48 H 1.09002 * 109.49978 * 61.43343 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.1323 -2.2227 0.9693 6 6 2.4996 -2.9597 2.2588 7 6 3.2082 -2.4789 -0.0886 8 6 3.3218 -3.9856 -0.3410 9 7 1.9941 -4.5077 -0.6920 10 6 1.8126 -5.2186 -1.8225 11 8 2.7504 -5.4332 -2.5611 12 6 0.4446 -5.7480 -2.1684 13 6 0.5135 -6.5137 -3.4912 14 6 -0.8545 -7.0425 -3.8373 15 1 -1.6896 -6.8519 -3.1795 16 6 -1.0402 -7.7697 -4.9940 17 7 -0.0236 -8.0015 -5.7954 18 14 -2.7359 -8.4258 -5.4227 19 1 -3.4658 -7.4185 -6.2338 20 1 -2.5980 -9.6827 -6.2014 21 1 -3.4918 -8.6975 -4.1737 22 6 0.8678 -4.2396 0.2126 23 6 0.7817 -2.7301 0.4589 24 1 -0.3633 0.6193 0.8202 25 1 -0.3633 0.4006 -0.9463 26 1 -0.3634 -1.0198 0.1263 27 1 1.8932 -0.5139 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.3512 -0.5476 2.0758 32 1 3.0265 -0.3394 1.5119 33 1 3.4585 -2.5940 2.6258 34 1 1.7308 -2.7814 3.0106 35 1 2.5710 -4.0288 2.0585 36 1 4.1653 -2.0962 0.2659 37 1 2.9347 -1.9744 -1.0152 38 1 4.0147 -4.1672 -1.1626 39 1 3.6827 -4.4809 0.5604 40 1 0.1038 -6.4175 -1.3787 41 1 -0.2529 -4.9161 -2.2656 42 1 0.8545 -5.8444 -4.2810 43 1 1.2110 -7.3456 -3.3936 44 1 -0.1542 -8.5127 -6.6093 45 1 1.0285 -4.7557 1.1591 46 1 -0.0585 -4.5889 -0.2436 47 1 0.0117 -2.5262 1.2030 48 1 0.5311 -2.2232 -0.4730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360595253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = -86.681441 kcal Electronic energy + Delta-G solvation = -23340.344723 eV Core-core repulsion = 20200.177730 eV Total energy + Delta-G solvation = -3140.166993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57165 -39.78442 -36.81697 -35.60932 -34.32922 -33.11425 -31.99360 -29.37709 -28.11569 -27.68129 -27.45206 -24.65058 -24.26662 -23.00634 -21.15123 -20.50446 -19.11257 -18.52597 -17.58911 -16.77221 -16.66396 -16.39588 -16.30845 -15.77703 -15.22499 -15.03983 -14.84356 -14.53557 -14.18574 -14.13110 -13.93832 -13.75128 -13.26265 -13.07781 -13.02561 -12.82195 -12.78074 -12.57149 -12.47166 -12.44500 -12.34765 -12.12309 -11.94156 -11.62126 -11.56171 -11.54559 -11.30615 -11.17505 -10.98846 -10.90230 -10.60441 -10.57122 -9.50366 -8.17939 -6.32426 1.41996 1.45143 1.56081 1.69924 2.10056 2.43537 3.14883 3.65692 3.74262 3.84166 3.90573 4.12291 4.17739 4.23433 4.27144 4.35031 4.44789 4.48465 4.50990 4.53689 4.72682 4.77329 4.81843 4.84304 4.87672 4.91895 4.95668 4.96828 5.05302 5.07990 5.12341 5.16578 5.18992 5.26426 5.29453 5.41407 5.47317 5.48983 5.55300 5.57229 5.61281 5.69053 5.72223 5.84596 6.17114 6.45123 6.85909 7.28931 7.38023 8.94942 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.003667 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.425771 B = 7634.853016 C = 8103.906710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.095 4.095 5 C -0.054 4.054 6 C -0.143 4.143 7 C -0.117 4.117 8 C 0.106 3.894 9 N -0.608 5.608 10 C 0.507 3.493 11 O -0.594 6.594 12 C -0.114 4.114 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.096 3.904 23 C -0.127 4.127 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.100 0.900 42 H -0.021 1.021 43 H -0.020 1.020 44 H 0.263 0.737 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 17.572 21.109 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.121 4.121 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.054 4.054 6 C -0.200 4.200 7 C -0.155 4.155 8 C -0.016 4.016 9 N -0.341 5.341 10 C 0.298 3.702 11 O -0.475 6.475 12 C -0.154 4.154 13 C 0.006 3.994 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.177 1.177 22 C -0.026 4.026 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.118 0.882 42 H -0.002 1.002 43 H -0.001 1.001 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.844 17.390 20.598 27.020 hybrid contribution -0.219 -0.555 -1.095 1.247 sum 1.625 16.835 19.503 25.815 Atomic orbital electron populations 1.22296 0.95151 1.03360 1.01332 1.21205 0.96156 0.96166 0.98587 1.21853 1.00794 0.95919 1.01671 1.21670 1.01694 0.92599 0.97267 1.20504 0.93989 0.95904 0.94989 1.21946 1.02130 0.99965 0.95974 1.21983 1.00389 0.93810 0.99279 1.21668 0.84172 0.95249 1.00551 1.48225 1.10987 1.52970 1.21953 1.21391 0.91484 0.77220 0.80151 1.90629 1.45235 1.60036 1.51621 1.21613 0.92711 1.01131 0.99936 1.18679 0.95649 0.93512 0.91539 1.21700 0.95383 1.33793 1.07141 0.90533 1.26163 1.01589 0.96477 0.96250 1.70183 1.33279 1.40995 1.13400 0.85303 0.78506 0.77513 0.78810 1.19669 1.21187 1.17745 1.22121 0.88841 0.97717 0.93908 1.22337 0.98114 0.93718 1.02325 0.92086 0.94032 0.90593 0.92700 0.92772 0.93477 0.92015 0.90591 0.91452 0.92031 0.91253 0.92861 0.89489 0.92979 0.92450 0.89962 0.88054 0.88181 1.00246 1.00126 0.92856 0.89406 0.89210 0.88161 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.53 71.98 0.61 -1.80 16 2 C -0.10 -1.55 2.33 -10.80 -0.03 -1.58 16 3 C -0.15 -1.99 9.05 71.98 0.65 -1.34 16 4 C -0.09 -1.18 4.06 30.60 0.12 -1.06 16 5 C -0.05 -0.79 0.53 -52.15 -0.03 -0.81 16 6 C -0.14 -1.74 7.71 71.98 0.56 -1.18 16 7 C -0.12 -2.28 4.69 30.67 0.14 -2.14 16 8 C 0.11 2.74 5.96 86.36 0.52 3.25 16 9 N -0.61 -17.98 2.97 -818.91 -2.43 -20.42 16 10 C 0.51 21.03 7.70 87.66 0.67 21.70 16 11 O -0.59 -30.92 15.40 -3.05 -0.05 -30.97 16 12 C -0.11 -4.82 3.99 29.85 0.12 -4.70 16 13 C 0.04 2.52 4.26 29.85 0.13 2.65 16 14 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 17 N -0.94 -60.52 13.29 21.45 0.28 -60.24 16 18 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 22 C 0.10 1.97 5.87 86.36 0.51 2.48 16 23 C -0.13 -2.06 3.23 30.67 0.10 -1.96 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 1.09 4.22 -2.39 -0.01 1.08 16 27 H 0.05 1.06 5.72 -2.38 -0.01 1.05 16 28 H 0.05 0.72 8.11 -2.39 -0.02 0.70 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.80 7.88 -2.39 -0.02 0.78 16 32 H 0.07 0.79 7.86 -2.39 -0.02 0.77 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.75 4.98 -2.39 -0.01 0.74 16 36 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.05 1.22 6.32 -2.39 -0.02 1.20 16 38 H 0.06 1.86 7.00 -2.39 -0.02 1.84 16 39 H 0.08 1.80 6.69 -2.39 -0.02 1.79 16 40 H 0.10 3.77 7.94 -2.39 -0.02 3.75 16 41 H 0.10 3.74 7.69 -2.39 -0.02 3.73 16 42 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 43 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.09 1.48 6.70 -2.39 -0.02 1.46 16 46 H 0.09 1.88 5.93 -2.39 -0.01 1.87 16 47 H 0.10 1.17 7.54 -2.38 -0.02 1.15 16 48 H 0.07 1.31 5.51 -2.39 -0.01 1.30 16 Total: -1.00 -76.56 354.36 5.52 -71.05 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.91 Total: 11.49 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.77 Total: -17.62 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.15 Total: -80.65 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.56 5.52 -71.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360595253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.635 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds