Wall clock time and date at job start Tue Mar 31 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54548 * 1 3 3 C 1.52988 * 107.27566 * 2 1 4 4 C 1.52475 * 107.51659 * 241.48342 * 2 1 3 5 5 C 1.52658 * 111.03343 * 189.56572 * 4 2 1 6 6 N 1.46922 * 109.08704 * 179.60669 * 5 4 2 7 7 C 1.34785 * 119.99718 * 85.98319 * 6 5 4 8 8 O 1.21277 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99614 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.46762 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46762 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99592 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00419 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47060 * 90.00031 * 15 13 11 17 17 H 1.48489 * 109.47118 * 210.00214 * 15 13 11 18 18 H 1.48503 * 109.47183 * 330.00429 * 15 13 11 19 19 C 1.52727 * 109.06461 * 60.60311 * 5 4 2 20 20 C 1.52692 * 110.46277 * 298.28613 * 19 5 4 21 21 C 1.52843 * 110.35224 * 289.24976 * 20 19 5 22 22 C 1.54482 * 107.50621 * 172.36960 * 20 19 5 23 23 C 1.51932 * 107.76650 * 120.15397 * 2 1 3 24 24 H 1.09000 * 109.47361 * 299.83860 * 1 2 3 25 25 H 1.08995 * 109.47150 * 59.84597 * 1 2 3 26 26 H 1.09007 * 109.46659 * 179.84694 * 1 2 3 27 27 H 1.09004 * 109.46732 * 184.68627 * 3 2 1 28 28 H 1.09003 * 109.46803 * 304.68053 * 3 2 1 29 29 H 1.08999 * 109.47357 * 64.68448 * 3 2 1 30 30 H 1.09340 * 109.37649 * 310.19662 * 4 2 1 31 31 H 1.09336 * 109.38848 * 68.90181 * 4 2 1 32 32 H 1.08700 * 110.44062 * 298.99262 * 5 4 2 33 33 H 0.96994 * 120.00358 * 265.98397 * 6 5 4 34 34 H 1.08997 * 109.46937 * 299.99899 * 9 7 6 35 35 H 1.08997 * 109.47033 * 59.99938 * 9 7 6 36 36 H 1.08991 * 109.47118 * 299.99992 * 10 9 7 37 37 H 1.08999 * 109.46736 * 60.00320 * 10 9 7 38 38 H 0.97003 * 120.00127 * 179.97438 * 14 13 11 39 39 H 1.09224 * 109.35440 * 177.86427 * 19 5 4 40 40 H 1.09212 * 109.38287 * 58.76575 * 19 5 4 41 41 H 1.08997 * 109.46922 * 178.01487 * 21 20 19 42 42 H 1.09000 * 109.46648 * 298.01238 * 21 20 19 43 43 H 1.08998 * 109.46933 * 58.00768 * 21 20 19 44 44 H 1.08996 * 109.47279 * 299.32620 * 22 20 19 45 45 H 1.09004 * 109.47232 * 59.32455 * 22 20 19 46 46 H 1.08998 * 109.47197 * 179.32295 * 22 20 19 47 47 H 1.10101 * 108.68628 * 285.94874 * 23 2 1 48 48 H 1.10101 * 108.66653 * 41.31881 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5455 0.0000 0.0000 3 6 1.9998 1.4609 0.0000 4 6 2.0044 -0.6942 -1.2776 5 6 3.5092 -0.9498 -1.2521 6 7 3.9027 -1.6266 -2.4954 7 6 4.1896 -0.9022 -3.5952 8 8 4.1224 0.3082 -3.5588 9 6 4.5938 -1.5964 -4.8703 10 6 4.8611 -0.5525 -5.9566 11 6 5.2659 -1.2467 -7.2315 12 1 5.3261 -2.3245 -7.2639 13 6 5.5584 -0.5057 -8.3569 14 7 5.4847 0.8067 -8.3176 15 14 6.0595 -1.3661 -9.9374 16 1 4.8494 -1.6578 -10.7473 17 1 6.9729 -0.4875 -10.7111 18 1 6.7544 -2.6371 -9.6103 19 6 3.8417 -1.8530 -0.0663 20 6 3.4621 -1.1720 1.2465 21 6 4.4106 -0.0089 1.5357 22 6 3.6429 -2.2089 2.3772 23 6 2.0091 -0.7268 1.2511 24 1 -0.3634 0.5113 0.8914 25 1 -0.3633 0.5162 -0.8886 26 1 -0.3633 -1.0278 -0.0027 27 1 3.0858 1.5036 -0.0840 28 1 1.5493 1.9814 -0.8451 29 1 1.6881 1.9383 0.9290 30 1 1.4787 -1.6473 -1.3815 31 1 1.7596 -0.0673 -2.1393 32 1 4.0525 -0.0111 -1.1796 33 1 3.9561 -2.5946 -2.5247 34 1 5.4981 -2.1793 -4.6957 35 1 3.7910 -2.2591 -5.1934 36 1 3.9566 0.0301 -6.1310 37 1 5.6637 0.1105 -5.6336 38 1 5.6908 1.3280 -9.1093 39 1 4.9122 -2.0700 -0.0656 40 1 3.2918 -2.7919 -0.1604 41 1 4.1056 0.4883 2.4565 42 1 5.4266 -0.3877 1.6467 43 1 4.3760 0.7020 0.7101 44 1 2.9863 -3.0603 2.1978 45 1 4.6789 -2.5471 2.3979 46 1 3.3910 -1.7510 3.3338 47 1 1.8438 -0.0723 2.1209 48 1 1.3706 -1.6110 1.4020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360720476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:50 Heat of formation + Delta-G solvation = -87.290284 kcal Electronic energy + Delta-G solvation = -23167.345337 eV Core-core repulsion = 20027.151942 eV Total energy + Delta-G solvation = -3140.193395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40228 -38.61517 -35.14479 -34.54828 -33.39899 -31.20282 -29.80901 -28.04095 -26.80659 -26.71296 -26.32934 -25.63067 -22.49426 -20.92240 -20.05507 -19.50722 -18.00308 -16.77832 -16.04897 -15.62706 -15.10240 -14.86570 -14.68160 -14.41521 -14.37111 -14.01500 -13.90934 -13.30758 -13.07249 -12.75459 -12.43022 -12.28759 -12.19890 -12.13628 -11.87499 -11.81471 -11.75282 -11.34555 -11.12963 -11.07834 -10.96304 -10.90472 -10.79628 -10.62147 -10.51732 -10.27635 -10.08552 -9.91331 -9.61699 -9.11876 -8.91380 -8.64891 -8.29208 -5.93469 -3.97689 3.34087 3.35061 3.40694 3.43338 3.58088 4.37748 4.49172 4.51119 4.59138 4.84725 4.86599 4.98779 5.09330 5.25951 5.33194 5.35407 5.41367 5.45092 5.46147 5.53662 5.59521 5.63623 5.65530 5.69173 5.74465 5.78998 5.85406 5.88527 5.92598 6.00114 6.02231 6.07234 6.17833 6.24757 6.27975 6.29702 6.34502 6.42611 6.47110 6.88241 6.95064 7.77544 7.90539 8.00094 8.10695 8.42323 8.87884 9.11367 9.65650 11.17462 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.003275 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.648697 B = 8548.155313 C = 8904.398921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.117 4.117 5 C 0.147 3.853 6 N -0.744 5.744 7 C 0.510 3.490 8 O -0.535 6.535 9 C -0.131 4.131 10 C 0.038 3.962 11 C -0.526 4.526 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.114 4.114 20 C -0.053 4.053 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.093 4.093 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.394 0.606 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -5.907 23.094 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.201 4.201 4 C -0.155 4.155 5 C 0.043 3.957 6 N -0.396 5.396 7 C 0.298 3.702 8 O -0.410 6.410 9 C -0.171 4.171 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.152 4.152 20 C -0.054 4.054 21 C -0.204 4.204 22 C -0.202 4.202 23 C -0.130 4.130 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.228 0.772 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.206 -4.854 23.000 24.586 hybrid contribution 0.221 -0.960 -0.922 1.349 sum -6.985 -5.814 22.078 23.875 Atomic orbital electron populations 1.22309 0.94876 1.01417 1.01628 1.20346 0.95194 0.95550 0.94395 1.22017 1.02018 0.94754 1.01354 1.21871 0.95701 1.00664 0.97304 1.20767 0.94901 0.96875 0.83200 1.46444 1.71863 1.09996 1.11333 1.21524 0.75348 0.88130 0.85189 1.90656 1.51408 1.14510 1.84430 1.21864 1.01341 1.01287 0.92595 1.18886 0.97994 0.92724 0.90400 1.21236 1.46453 0.93018 0.95778 0.92653 1.25025 0.95662 0.94803 0.98911 1.69998 1.48845 1.04754 1.29254 0.86599 0.78425 0.79422 0.83549 1.20694 1.21237 1.19895 1.21787 1.01670 0.98428 0.93326 1.20342 0.95099 0.95540 0.94413 1.22012 0.98640 0.97992 1.01756 1.22292 1.01595 0.98391 0.97934 1.21400 0.94630 0.99976 0.97014 0.92918 0.92556 0.92956 0.91977 0.92483 0.93030 0.92179 0.91252 0.89331 0.77232 0.90393 0.90406 0.95876 0.95862 0.92983 0.91424 0.91608 0.92714 0.92689 0.91761 0.92822 0.92657 0.92783 0.92253 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.07 37.97 0.31 -1.02 16 2 C -0.05 -0.55 0.70 -154.51 -0.11 -0.65 16 3 C -0.14 -1.56 7.97 37.15 0.30 -1.26 16 4 C -0.12 -1.43 4.08 -27.18 -0.11 -1.54 16 5 C 0.15 1.87 2.24 -68.02 -0.15 1.72 16 6 N -0.74 -10.61 5.06 -53.95 -0.27 -10.88 16 7 C 0.51 9.93 7.80 -10.98 -0.09 9.85 16 8 O -0.53 -12.69 15.62 5.56 0.09 -12.60 16 9 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 10 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 11 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.11 -1.10 3.97 -27.03 -0.11 -1.21 16 20 C -0.05 -0.45 0.69 -154.50 -0.11 -0.56 16 21 C -0.15 -1.31 7.97 37.08 0.30 -1.01 16 22 C -0.14 -1.04 8.10 37.93 0.31 -0.74 16 23 C -0.09 -0.79 3.43 -27.80 -0.10 -0.89 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 27 H 0.06 0.72 4.68 -51.93 -0.24 0.48 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.05 0.47 8.07 -51.93 -0.42 0.06 16 30 H 0.06 0.69 8.10 -51.74 -0.42 0.27 16 31 H 0.07 1.06 8.12 -51.74 -0.42 0.64 16 32 H 0.09 1.35 5.45 -52.10 -0.28 1.06 16 33 H 0.39 4.48 8.59 -40.82 -0.35 4.13 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 0.66 8.14 -51.80 -0.42 0.24 16 40 H 0.07 0.58 8.12 -51.81 -0.42 0.15 16 41 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 42 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 43 H 0.06 0.66 4.52 -51.93 -0.23 0.43 16 44 H 0.05 0.37 8.06 -51.93 -0.42 -0.05 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.48 7.97 -51.30 -0.41 0.07 16 48 H 0.06 0.47 7.65 -51.30 -0.39 0.08 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -33.08 365.29 -8.25 -41.33 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -9.03 Total: -0.10 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.25 Total: -13.12 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.46 Total: -37.85 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.08 -8.25 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360720476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.960 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds