Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54548 * 1 3 3 C 1.52988 * 107.27566 * 2 1 4 4 C 1.52475 * 107.51659 * 241.48342 * 2 1 3 5 5 C 1.52658 * 111.03343 * 189.56572 * 4 2 1 6 6 N 1.46922 * 109.08704 * 179.60669 * 5 4 2 7 7 C 1.34785 * 119.99718 * 85.98319 * 6 5 4 8 8 O 1.21277 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99614 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.46762 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46762 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99592 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00419 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47060 * 90.00031 * 15 13 11 17 17 H 1.48489 * 109.47118 * 210.00214 * 15 13 11 18 18 H 1.48503 * 109.47183 * 330.00429 * 15 13 11 19 19 C 1.52727 * 109.06461 * 60.60311 * 5 4 2 20 20 C 1.52692 * 110.46277 * 298.28613 * 19 5 4 21 21 C 1.52843 * 110.35224 * 289.24976 * 20 19 5 22 22 C 1.54482 * 107.50621 * 172.36960 * 20 19 5 23 23 C 1.51932 * 107.76650 * 120.15397 * 2 1 3 24 24 H 1.09000 * 109.47361 * 299.83860 * 1 2 3 25 25 H 1.08995 * 109.47150 * 59.84597 * 1 2 3 26 26 H 1.09007 * 109.46659 * 179.84694 * 1 2 3 27 27 H 1.09004 * 109.46732 * 184.68627 * 3 2 1 28 28 H 1.09003 * 109.46803 * 304.68053 * 3 2 1 29 29 H 1.08999 * 109.47357 * 64.68448 * 3 2 1 30 30 H 1.09340 * 109.37649 * 310.19662 * 4 2 1 31 31 H 1.09336 * 109.38848 * 68.90181 * 4 2 1 32 32 H 1.08700 * 110.44062 * 298.99262 * 5 4 2 33 33 H 0.96994 * 120.00358 * 265.98397 * 6 5 4 34 34 H 1.08997 * 109.46937 * 299.99899 * 9 7 6 35 35 H 1.08997 * 109.47033 * 59.99938 * 9 7 6 36 36 H 1.08991 * 109.47118 * 299.99992 * 10 9 7 37 37 H 1.08999 * 109.46736 * 60.00320 * 10 9 7 38 38 H 0.97003 * 120.00127 * 179.97438 * 14 13 11 39 39 H 1.09224 * 109.35440 * 177.86427 * 19 5 4 40 40 H 1.09212 * 109.38287 * 58.76575 * 19 5 4 41 41 H 1.08997 * 109.46922 * 178.01487 * 21 20 19 42 42 H 1.09000 * 109.46648 * 298.01238 * 21 20 19 43 43 H 1.08998 * 109.46933 * 58.00768 * 21 20 19 44 44 H 1.08996 * 109.47279 * 299.32620 * 22 20 19 45 45 H 1.09004 * 109.47232 * 59.32455 * 22 20 19 46 46 H 1.08998 * 109.47197 * 179.32295 * 22 20 19 47 47 H 1.10101 * 108.68628 * 285.94874 * 23 2 1 48 48 H 1.10101 * 108.66653 * 41.31881 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5455 0.0000 0.0000 3 6 1.9998 1.4609 0.0000 4 6 2.0044 -0.6942 -1.2776 5 6 3.5092 -0.9498 -1.2521 6 7 3.9027 -1.6266 -2.4954 7 6 4.1896 -0.9022 -3.5952 8 8 4.1224 0.3082 -3.5588 9 6 4.5938 -1.5964 -4.8703 10 6 4.8611 -0.5525 -5.9566 11 6 5.2659 -1.2467 -7.2315 12 1 5.3261 -2.3245 -7.2639 13 6 5.5584 -0.5057 -8.3569 14 7 5.4847 0.8067 -8.3176 15 14 6.0595 -1.3661 -9.9374 16 1 4.8494 -1.6578 -10.7473 17 1 6.9729 -0.4875 -10.7111 18 1 6.7544 -2.6371 -9.6103 19 6 3.8417 -1.8530 -0.0663 20 6 3.4621 -1.1720 1.2465 21 6 4.4106 -0.0089 1.5357 22 6 3.6429 -2.2089 2.3772 23 6 2.0091 -0.7268 1.2511 24 1 -0.3634 0.5113 0.8914 25 1 -0.3633 0.5162 -0.8886 26 1 -0.3633 -1.0278 -0.0027 27 1 3.0858 1.5036 -0.0840 28 1 1.5493 1.9814 -0.8451 29 1 1.6881 1.9383 0.9290 30 1 1.4787 -1.6473 -1.3815 31 1 1.7596 -0.0673 -2.1393 32 1 4.0525 -0.0111 -1.1796 33 1 3.9561 -2.5946 -2.5247 34 1 5.4981 -2.1793 -4.6957 35 1 3.7910 -2.2591 -5.1934 36 1 3.9566 0.0301 -6.1310 37 1 5.6637 0.1105 -5.6336 38 1 5.6908 1.3280 -9.1093 39 1 4.9122 -2.0700 -0.0656 40 1 3.2918 -2.7919 -0.1604 41 1 4.1056 0.4883 2.4565 42 1 5.4266 -0.3877 1.6467 43 1 4.3760 0.7020 0.7101 44 1 2.9863 -3.0603 2.1978 45 1 4.6789 -2.5471 2.3979 46 1 3.3910 -1.7510 3.3338 47 1 1.8438 -0.0723 2.1209 48 1 1.3706 -1.6110 1.4020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360720476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = -107.590852 kcal Electronic energy + Delta-G solvation = -23168.225636 eV Core-core repulsion = 20027.151942 eV Total energy + Delta-G solvation = -3141.073694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42706 -40.00828 -35.93913 -35.85560 -35.48988 -33.11307 -31.14859 -28.80133 -27.65543 -27.46200 -27.41723 -27.20165 -24.16374 -22.34340 -21.31614 -20.57717 -19.05687 -18.59872 -17.38906 -17.17668 -16.48737 -16.44010 -15.79457 -15.58707 -15.41605 -14.99440 -14.89145 -14.55381 -14.15510 -14.13286 -14.04668 -13.54468 -13.23204 -13.06452 -12.95463 -12.82480 -12.64586 -12.59340 -12.50948 -12.46019 -12.27148 -11.94101 -11.89977 -11.78380 -11.63583 -11.57324 -11.43611 -11.30136 -11.11869 -10.91351 -10.57404 -10.56296 -9.93673 -8.18249 -6.32634 1.41504 1.44593 1.55556 1.76120 2.27219 2.45054 3.14502 3.59863 3.71085 3.79035 4.02549 4.08453 4.11339 4.19592 4.29569 4.39437 4.43834 4.52044 4.56164 4.58316 4.71507 4.76386 4.81452 4.87464 4.92334 4.95428 4.97127 5.04044 5.05634 5.08095 5.12391 5.13941 5.17097 5.21753 5.34867 5.41414 5.44225 5.48863 5.54380 5.56558 5.62790 5.63437 5.66207 5.85303 6.17452 6.68306 6.85986 7.37370 7.41821 8.94472 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.003275 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.648697 B = 8548.155313 C = 8904.398921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.145 3.855 6 N -0.719 5.719 7 C 0.510 3.490 8 O -0.589 6.589 9 C -0.120 4.120 10 C 0.043 3.957 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.975 3.025 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.255 1.255 19 C -0.107 4.107 20 C -0.053 4.053 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.090 4.090 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.102 0.898 36 H -0.020 1.020 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 -9.230 24.620 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.150 4.150 5 C 0.041 3.959 6 N -0.371 5.371 7 C 0.298 3.702 8 O -0.469 6.469 9 C -0.160 4.160 10 C 0.005 3.995 11 C -0.581 4.581 12 H 0.094 0.906 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.178 1.178 19 C -0.144 4.144 20 C -0.053 4.053 21 C -0.205 4.205 22 C -0.197 4.197 23 C -0.128 4.128 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.120 0.880 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.566 -8.246 24.573 27.001 hybrid contribution 0.320 0.134 -1.354 1.398 sum -7.247 -8.112 23.219 25.640 Atomic orbital electron populations 1.22283 0.93868 1.02168 1.01638 1.20340 0.96003 0.94709 0.94189 1.22022 1.01008 0.95763 1.01372 1.21816 0.95324 1.00720 0.97138 1.20898 0.94973 0.96475 0.83505 1.46185 1.69666 1.10816 1.10453 1.21312 0.75259 0.87411 0.86176 1.90646 1.54092 1.16818 1.85321 1.21639 1.03442 0.99618 0.91271 1.18673 0.94449 0.93484 0.92850 1.21722 1.46065 0.94093 0.96249 0.90600 1.26162 0.95445 0.95476 1.03451 1.70184 1.50084 1.06946 1.30600 0.85303 0.78271 0.78565 0.77996 1.19681 1.21154 1.17830 1.21770 1.02162 0.98383 0.92135 1.20345 0.94935 0.95733 0.94324 1.22024 0.99078 0.97961 1.01442 1.22233 1.02006 0.98036 0.97377 1.21371 0.94745 1.00595 0.96042 0.91435 0.94095 0.91781 0.93344 0.94625 0.91127 0.90725 0.95315 0.92331 0.74926 0.87877 0.87960 1.00149 1.00071 0.92865 0.91228 0.89570 0.91569 0.92567 0.93911 0.91874 0.92500 0.91939 0.91076 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.07 72.51 0.58 -1.83 16 2 C -0.05 -1.00 0.70 -52.18 -0.04 -1.04 16 3 C -0.14 -3.23 7.97 71.98 0.57 -2.66 16 4 C -0.11 -2.73 4.08 30.31 0.12 -2.61 16 5 C 0.15 3.69 2.24 44.71 0.10 3.79 16 6 N -0.72 -20.11 5.06 -442.98 -2.24 -22.35 16 7 C 0.51 20.47 7.80 87.66 0.68 21.15 16 8 O -0.59 -29.98 15.62 -3.02 -0.05 -30.03 16 9 C -0.12 -4.96 5.64 29.85 0.17 -4.80 16 10 C 0.04 2.47 4.26 29.85 0.13 2.59 16 11 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 12 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 13 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 14 N -0.94 -60.55 13.29 21.45 0.28 -60.26 16 15 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 19 C -0.11 -1.82 3.97 30.40 0.12 -1.70 16 20 C -0.05 -0.77 0.69 -52.17 -0.04 -0.81 16 21 C -0.15 -2.46 7.97 71.93 0.57 -1.89 16 22 C -0.14 -1.49 8.10 72.49 0.59 -0.90 16 23 C -0.09 -1.29 3.43 29.90 0.10 -1.19 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.94 8.05 -2.38 -0.02 0.92 16 27 H 0.05 1.21 4.68 -2.38 -0.01 1.20 16 28 H 0.03 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.07 1.59 8.10 -2.21 -0.02 1.57 16 31 H 0.03 0.93 8.12 -2.21 -0.02 0.91 16 32 H 0.06 1.89 5.45 -2.55 -0.01 1.88 16 33 H 0.41 8.40 8.59 -92.71 -0.80 7.60 16 34 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 37 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.07 1.19 8.14 -2.27 -0.02 1.17 16 40 H 0.09 1.16 8.12 -2.27 -0.02 1.15 16 41 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 42 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 43 H 0.04 0.90 4.52 -2.39 -0.01 0.89 16 44 H 0.06 0.58 8.06 -2.39 -0.02 0.57 16 45 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.90 7.97 -1.80 -0.01 0.89 16 48 H 0.07 0.89 7.65 -1.80 -0.01 0.87 16 Total: -1.00 -76.84 365.29 4.51 -72.33 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.12 Total: 16.60 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.37 Total: -23.20 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.96 Total: -82.61 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.05 Total: -30.03 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.84 4.51 -72.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360720476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.260 kcal (2) G-P(sol) polarization free energy of solvation -76.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds