Wall clock time and date at job start Tue Mar 31 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48493 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46696 * 299.99549 * 3 2 1 6 6 H 1.48496 * 109.47340 * 59.99352 * 3 2 1 7 7 C 1.38816 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99587 * 159.26824 * 7 2 1 9 9 N 1.36932 * 120.00402 * 339.26847 * 7 2 1 10 10 C 1.46502 * 119.99905 * 321.60058 * 9 7 2 11 11 C 1.53002 * 109.47025 * 270.00083 * 10 9 7 12 12 C 1.53001 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47310 * 179.97438 * 12 11 10 14 14 C 1.53177 * 109.54254 * 294.55247 * 13 12 11 15 15 C 1.53092 * 109.16352 * 183.15392 * 14 13 12 16 16 O 1.42902 * 109.41614 * 57.61119 * 15 14 13 17 17 C 1.42904 * 114.09813 * 298.83875 * 16 15 14 18 18 C 1.53097 * 109.41114 * 61.15805 * 17 16 15 19 19 C 1.46497 * 120.00363 * 141.59803 * 9 7 2 20 20 C 1.54266 * 110.03207 * 62.54981 * 19 9 7 21 21 C 1.54957 * 104.16167 * 217.13821 * 20 19 9 22 22 C 1.54895 * 102.77639 * 37.88730 * 21 20 19 23 23 C 1.53879 * 110.02971 * 305.33482 * 19 9 7 24 24 H 0.96996 * 119.99960 * 355.04189 * 1 2 3 25 25 H 1.08993 * 109.47606 * 149.99695 * 10 9 7 26 26 H 1.09005 * 109.47039 * 29.99237 * 10 9 7 27 27 H 1.09000 * 109.47058 * 59.99739 * 11 10 9 28 28 H 1.08999 * 109.47133 * 299.99748 * 11 10 9 29 29 H 1.09004 * 109.47049 * 59.99459 * 12 11 10 30 30 H 1.08999 * 109.46851 * 299.99942 * 12 11 10 31 31 H 1.09001 * 109.62097 * 54.78026 * 13 12 11 32 32 H 1.09003 * 109.52657 * 303.06180 * 14 13 12 33 33 H 1.09000 * 109.51972 * 63.24877 * 14 13 12 34 34 H 1.09003 * 109.48231 * 297.62305 * 15 14 13 35 35 H 1.08999 * 109.48240 * 177.59582 * 15 14 13 36 36 H 1.09000 * 109.48195 * 301.18261 * 17 16 15 37 37 H 1.08998 * 109.49344 * 181.14722 * 17 16 15 38 38 H 1.09001 * 109.52174 * 182.48743 * 18 17 16 39 39 H 1.09004 * 109.52203 * 62.29632 * 18 17 16 40 40 H 1.08998 * 110.01488 * 183.94353 * 19 9 7 41 41 H 1.09007 * 110.48571 * 335.78810 * 20 19 9 42 42 H 1.08995 * 110.48671 * 98.42485 * 20 19 9 43 43 H 1.09002 * 110.72069 * 279.57752 * 21 20 19 44 44 H 1.09001 * 110.92366 * 156.29335 * 21 20 19 45 45 H 1.09001 * 110.48351 * 203.40656 * 22 21 20 46 46 H 1.09002 * 110.59881 * 80.82268 * 22 21 20 47 47 H 1.09001 * 110.02530 * 238.56864 * 23 19 9 48 48 H 1.08992 * 110.03436 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0377 -1.2326 -0.3306 9 7 1.3921 -2.3495 0.4208 10 6 0.4698 -2.3101 1.5584 11 6 1.2462 -2.5584 2.8532 12 6 0.2831 -2.5166 4.0414 13 6 1.0593 -2.7655 5.3361 14 6 1.6193 -4.1913 5.3318 15 6 2.3264 -4.4575 6.6632 16 8 1.4065 -4.2569 7.7381 17 6 0.8862 -2.9285 7.8207 18 6 0.1212 -2.6009 6.5357 19 6 1.6529 -3.6164 -0.2671 20 6 3.1425 -3.9942 -0.1318 21 6 3.4982 -4.6297 -1.4996 22 6 2.6998 -3.7578 -2.5004 23 6 1.3713 -3.4664 -1.7724 24 1 -0.4850 0.8369 0.0726 25 1 -0.2903 -3.0818 1.4369 26 1 -0.0093 -1.3321 1.6040 27 1 2.0063 -1.7867 2.9748 28 1 1.7254 -3.5364 2.8077 29 1 -0.4773 -3.2881 3.9200 30 1 -0.1957 -1.5385 4.0867 31 1 1.8795 -2.0519 5.4140 32 1 0.8034 -4.9028 5.2040 33 1 2.3307 -4.3007 4.5132 34 1 3.1672 -3.7723 6.7716 35 1 2.6899 -5.4849 6.6827 36 1 1.7081 -2.2233 7.9442 37 1 0.2122 -2.8543 8.6741 38 1 -0.2388 -1.5729 6.5782 39 1 -0.7250 -3.2802 6.4323 40 1 1.0281 -4.4045 0.1530 41 1 3.7473 -3.1045 0.0441 42 1 3.2814 -4.7161 0.6729 43 1 3.1662 -5.6671 -1.5408 44 1 4.5683 -4.5600 -1.6947 45 1 2.5164 -4.3076 -3.4235 46 1 3.2317 -2.8296 -2.7096 47 1 0.6105 -4.1825 -2.0830 48 1 1.0402 -2.4513 -1.9911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361466150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:28 Heat of formation + Delta-G solvation = -64.993283 kcal Electronic energy + Delta-G solvation = -23316.743218 eV Core-core repulsion = 20177.516693 eV Total energy + Delta-G solvation = -3139.226524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.39541 -37.73248 -35.70472 -34.13363 -31.56361 -31.05517 -30.25243 -27.79520 -26.91828 -26.03642 -23.91236 -23.43397 -21.82363 -20.26579 -19.87958 -19.75741 -18.97738 -16.35199 -16.01278 -15.94488 -15.30898 -15.02074 -14.72145 -14.52719 -14.24818 -13.85881 -13.44135 -13.25454 -12.82046 -12.63914 -12.49105 -12.19234 -11.73572 -11.41850 -11.34011 -11.27907 -11.00162 -10.85156 -10.76547 -10.48689 -10.39995 -10.33174 -10.24280 -10.15882 -10.13768 -10.03173 -9.99823 -9.63243 -9.50827 -9.36276 -9.27484 -8.39506 -6.49347 -5.68712 -3.32944 3.36116 3.45830 3.47833 3.86296 4.51590 4.78629 4.84477 4.98253 5.05466 5.21373 5.31061 5.38737 5.42588 5.46980 5.51425 5.54175 5.63258 5.73435 5.76033 5.84557 5.91749 6.02226 6.11012 6.14360 6.19919 6.25339 6.27873 6.33307 6.45373 6.47748 6.51229 6.59335 6.62242 6.63902 6.71384 6.85955 6.93755 6.94763 7.06835 7.17230 7.19997 7.32791 7.45594 7.78574 7.89172 8.59532 9.27386 9.90083 10.49002 11.25950 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.004871 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.830895 B = 5746.824919 C = 7004.820543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.011 3.989 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.059 0.941 9 N -0.579 5.579 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.108 4.108 13 C -0.088 4.088 14 C -0.150 4.150 15 C 0.060 3.940 16 O -0.388 6.388 17 C 0.061 3.939 18 C -0.152 4.152 19 C 0.171 3.829 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.251 0.749 25 H 0.018 0.982 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.061 0.939 47 H 0.039 0.961 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -7.579 8.938 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.076 0.924 9 N -0.298 5.298 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.147 4.147 13 C -0.107 4.107 14 C -0.187 4.187 15 C -0.017 4.017 16 O -0.307 6.307 17 C -0.016 4.016 18 C -0.189 4.189 19 C 0.063 3.937 20 C -0.174 4.174 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.307 -7.578 8.985 11.978 hybrid contribution 0.495 1.168 -0.196 1.284 sum 2.801 -6.410 8.788 11.232 Atomic orbital electron populations 1.70083 1.05422 1.25652 1.51726 1.25127 0.94872 0.98459 1.00451 0.86485 0.79891 0.84745 0.77235 1.20199 1.21794 1.21634 1.18923 0.93457 0.85519 1.39290 0.92361 1.43949 1.51888 1.03184 1.30800 1.20911 0.90730 1.01973 0.84281 1.22201 0.98771 1.00341 0.95844 1.21563 0.98307 1.01240 0.93544 1.21224 0.97996 0.96421 0.95039 1.22267 1.01249 0.97515 0.97682 1.22609 0.91166 1.01365 0.86527 1.87886 1.62088 1.30071 1.50666 1.22573 0.97134 0.84069 0.97818 1.22269 0.99275 1.02252 0.95128 1.21028 0.92708 0.88718 0.91208 1.22853 0.99976 0.99629 0.94918 1.22441 0.98625 0.98317 0.96713 1.22251 0.97456 0.98930 0.96877 1.22552 0.95270 1.02466 0.96782 0.93912 0.96349 0.89191 0.92618 0.93856 0.92766 0.92221 0.91371 0.91302 0.90357 0.93421 0.89241 0.93445 0.89309 0.90998 0.91199 0.93684 0.90933 0.93690 0.92772 0.93026 0.93521 0.92051 0.94255 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 11.48 55.49 0.64 -24.27 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 3 Si 0.89 21.27 29.61 -169.99 -5.03 16.23 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.30 7.75 -15.06 -0.12 -6.42 16 8 H 0.06 1.55 6.94 -52.49 -0.36 1.19 16 9 N -0.58 -13.74 2.38 -164.39 -0.39 -14.13 16 10 C 0.15 3.32 5.28 -4.04 -0.02 3.30 16 11 C -0.13 -2.48 5.30 -26.73 -0.14 -2.63 16 12 C -0.11 -1.72 4.69 -26.73 -0.13 -1.84 16 13 C -0.09 -1.19 2.27 -90.44 -0.21 -1.40 16 14 C -0.15 -1.89 5.10 -26.59 -0.14 -2.03 16 15 C 0.06 0.69 6.84 37.20 0.25 0.95 16 16 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 17 C 0.06 0.67 6.84 37.21 0.25 0.93 16 18 C -0.15 -1.80 5.42 -26.59 -0.14 -1.94 16 19 C 0.17 3.55 3.42 -66.81 -0.23 3.32 16 20 C -0.13 -2.48 6.43 -25.04 -0.16 -2.64 16 21 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 22 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 23 C -0.13 -2.67 6.24 -25.61 -0.16 -2.83 16 24 H 0.25 6.85 8.32 -40.82 -0.34 6.51 16 25 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 26 H 0.09 2.32 5.55 -51.93 -0.29 2.03 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.79 6.66 -51.93 -0.35 0.44 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.02 6.75 -51.93 -0.35 0.67 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.91 7.81 -51.93 -0.41 0.50 16 41 H 0.07 1.49 6.64 -51.92 -0.34 1.15 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 2.06 7.17 -51.93 -0.37 1.69 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -27.52 362.01 -10.27 -37.80 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.20 Total: 1.71 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.36 Total: -17.39 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.25 Total: -38.40 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.52 -10.27 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361466150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.197 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds