Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48493 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46696 * 299.99549 * 3 2 1 6 6 H 1.48496 * 109.47340 * 59.99352 * 3 2 1 7 7 C 1.38816 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99587 * 159.26824 * 7 2 1 9 9 N 1.36932 * 120.00402 * 339.26847 * 7 2 1 10 10 C 1.46502 * 119.99905 * 321.60058 * 9 7 2 11 11 C 1.53002 * 109.47025 * 270.00083 * 10 9 7 12 12 C 1.53001 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47310 * 179.97438 * 12 11 10 14 14 C 1.53177 * 109.54254 * 294.55247 * 13 12 11 15 15 C 1.53092 * 109.16352 * 183.15392 * 14 13 12 16 16 O 1.42902 * 109.41614 * 57.61119 * 15 14 13 17 17 C 1.42904 * 114.09813 * 298.83875 * 16 15 14 18 18 C 1.53097 * 109.41114 * 61.15805 * 17 16 15 19 19 C 1.46497 * 120.00363 * 141.59803 * 9 7 2 20 20 C 1.54266 * 110.03207 * 62.54981 * 19 9 7 21 21 C 1.54957 * 104.16167 * 217.13821 * 20 19 9 22 22 C 1.54895 * 102.77639 * 37.88730 * 21 20 19 23 23 C 1.53879 * 110.02971 * 305.33482 * 19 9 7 24 24 H 0.96996 * 119.99960 * 355.04189 * 1 2 3 25 25 H 1.08993 * 109.47606 * 149.99695 * 10 9 7 26 26 H 1.09005 * 109.47039 * 29.99237 * 10 9 7 27 27 H 1.09000 * 109.47058 * 59.99739 * 11 10 9 28 28 H 1.08999 * 109.47133 * 299.99748 * 11 10 9 29 29 H 1.09004 * 109.47049 * 59.99459 * 12 11 10 30 30 H 1.08999 * 109.46851 * 299.99942 * 12 11 10 31 31 H 1.09001 * 109.62097 * 54.78026 * 13 12 11 32 32 H 1.09003 * 109.52657 * 303.06180 * 14 13 12 33 33 H 1.09000 * 109.51972 * 63.24877 * 14 13 12 34 34 H 1.09003 * 109.48231 * 297.62305 * 15 14 13 35 35 H 1.08999 * 109.48240 * 177.59582 * 15 14 13 36 36 H 1.09000 * 109.48195 * 301.18261 * 17 16 15 37 37 H 1.08998 * 109.49344 * 181.14722 * 17 16 15 38 38 H 1.09001 * 109.52174 * 182.48743 * 18 17 16 39 39 H 1.09004 * 109.52203 * 62.29632 * 18 17 16 40 40 H 1.08998 * 110.01488 * 183.94353 * 19 9 7 41 41 H 1.09007 * 110.48571 * 335.78810 * 20 19 9 42 42 H 1.08995 * 110.48671 * 98.42485 * 20 19 9 43 43 H 1.09002 * 110.72069 * 279.57752 * 21 20 19 44 44 H 1.09001 * 110.92366 * 156.29335 * 21 20 19 45 45 H 1.09001 * 110.48351 * 203.40656 * 22 21 20 46 46 H 1.09002 * 110.59881 * 80.82268 * 22 21 20 47 47 H 1.09001 * 110.02530 * 238.56864 * 23 19 9 48 48 H 1.08992 * 110.03436 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0377 -1.2326 -0.3306 9 7 1.3921 -2.3495 0.4208 10 6 0.4698 -2.3101 1.5584 11 6 1.2462 -2.5584 2.8532 12 6 0.2831 -2.5166 4.0414 13 6 1.0593 -2.7655 5.3361 14 6 1.6193 -4.1913 5.3318 15 6 2.3264 -4.4575 6.6632 16 8 1.4065 -4.2569 7.7381 17 6 0.8862 -2.9285 7.8207 18 6 0.1212 -2.6009 6.5357 19 6 1.6529 -3.6164 -0.2671 20 6 3.1425 -3.9942 -0.1318 21 6 3.4982 -4.6297 -1.4996 22 6 2.6998 -3.7578 -2.5004 23 6 1.3713 -3.4664 -1.7724 24 1 -0.4850 0.8369 0.0726 25 1 -0.2903 -3.0818 1.4369 26 1 -0.0093 -1.3321 1.6040 27 1 2.0063 -1.7867 2.9748 28 1 1.7254 -3.5364 2.8077 29 1 -0.4773 -3.2881 3.9200 30 1 -0.1957 -1.5385 4.0867 31 1 1.8795 -2.0519 5.4140 32 1 0.8034 -4.9028 5.2040 33 1 2.3307 -4.3007 4.5132 34 1 3.1672 -3.7723 6.7716 35 1 2.6899 -5.4849 6.6827 36 1 1.7081 -2.2233 7.9442 37 1 0.2122 -2.8543 8.6741 38 1 -0.2388 -1.5729 6.5782 39 1 -0.7250 -3.2802 6.4323 40 1 1.0281 -4.4045 0.1530 41 1 3.7473 -3.1045 0.0441 42 1 3.2814 -4.7161 0.6729 43 1 3.1662 -5.6671 -1.5408 44 1 4.5683 -4.5600 -1.6947 45 1 2.5164 -4.3076 -3.4235 46 1 3.2317 -2.8296 -2.7096 47 1 0.6105 -4.1825 -2.0830 48 1 1.0402 -2.4513 -1.9911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361466150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = -77.562771 kcal Electronic energy + Delta-G solvation = -23317.288272 eV Core-core repulsion = 20177.516693 eV Total energy + Delta-G solvation = -3139.771578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.38941 -39.35879 -37.04086 -35.70594 -33.31899 -32.08183 -31.73646 -29.31404 -28.38926 -27.75011 -25.39202 -24.45904 -23.26527 -21.80048 -21.25105 -20.89803 -20.71706 -18.13894 -17.14933 -16.93168 -16.91063 -16.52601 -16.16185 -15.89722 -15.55383 -15.12583 -14.85700 -14.82012 -14.32323 -14.06041 -13.91415 -13.34629 -13.17947 -13.05242 -12.89494 -12.65753 -12.54826 -12.32297 -12.20939 -12.09301 -11.92657 -11.77022 -11.74302 -11.66342 -11.61851 -11.38617 -11.22700 -11.16703 -11.08199 -10.98661 -10.44242 -10.36576 -8.47369 -7.70021 -5.38615 1.41817 1.46443 1.54658 2.53533 2.99503 3.28733 3.59183 3.80351 3.86064 3.96277 4.00679 4.06101 4.12064 4.28599 4.33552 4.37945 4.49260 4.59973 4.66320 4.70150 4.74872 4.77904 4.81179 4.82176 4.90980 4.95023 4.96882 4.99733 5.01014 5.07646 5.16513 5.19555 5.24364 5.24699 5.32961 5.35519 5.41915 5.44008 5.58551 5.63413 5.64590 5.72373 5.80040 5.94566 6.28030 6.55581 7.26472 7.97956 8.49819 9.19686 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.004871 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.830895 B = 5746.824919 C = 7004.820543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.038 4.038 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.233 4.233 8 H 0.051 0.949 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.112 4.112 12 C -0.100 4.100 13 C -0.086 4.086 14 C -0.146 4.146 15 C 0.060 3.940 16 O -0.403 6.403 17 C 0.059 3.941 18 C -0.148 4.148 19 C 0.161 3.839 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.246 0.754 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -9.272 9.732 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.234 4.234 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.364 4.364 8 H 0.069 0.931 9 N -0.312 5.312 10 C 0.022 3.978 11 C -0.152 4.152 12 C -0.139 4.139 13 C -0.104 4.104 14 C -0.184 4.184 15 C -0.016 4.016 16 O -0.322 6.322 17 C -0.017 4.017 18 C -0.186 4.186 19 C 0.054 3.946 20 C -0.167 4.167 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.169 4.169 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.568 -9.289 9.781 13.953 hybrid contribution 0.073 1.640 -0.484 1.712 sum 3.641 -7.649 9.297 12.578 Atomic orbital electron populations 1.70199 1.06558 1.25782 1.53686 1.25703 0.95455 1.00941 1.01331 0.85633 0.79142 0.81606 0.76667 1.19446 1.22264 1.21803 1.18998 0.93069 0.86516 1.37802 0.93147 1.44151 1.51764 1.03699 1.31635 1.20846 0.91042 1.00081 0.85862 1.21925 0.98230 0.99918 0.95128 1.21465 0.97891 1.00797 0.93698 1.21163 0.97877 0.97049 0.94327 1.22221 1.01120 0.96594 0.98427 1.22678 0.90937 1.02572 0.85436 1.87873 1.62378 1.30975 1.50963 1.22692 0.97603 0.83576 0.97834 1.22232 0.98875 1.02640 0.94819 1.21276 0.94585 0.87521 0.91213 1.22722 0.97402 0.99225 0.97317 1.22406 0.99571 0.98902 0.94017 1.22214 0.95677 0.99018 0.98188 1.22468 0.97353 0.99973 0.97106 0.94452 0.96411 0.92503 0.94772 0.92828 0.92243 0.93423 0.91932 0.91528 0.90824 0.92832 0.87643 0.92765 0.87445 0.90429 0.91365 0.92992 0.93435 0.91944 0.90335 0.91165 0.90901 0.93676 0.92918 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 11.48 21.65 0.25 -53.31 16 2 C -0.04 -2.08 4.96 84.86 0.42 -1.66 16 3 Si 0.94 44.82 29.61 68.60 2.03 46.85 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.23 -12.44 7.75 84.04 0.65 -11.79 16 8 H 0.05 2.75 6.94 -2.91 -0.02 2.73 16 9 N -0.59 -28.68 2.38 -674.01 -1.60 -30.28 16 10 C 0.15 6.84 5.28 86.38 0.46 7.30 16 11 C -0.11 -4.27 5.30 30.60 0.16 -4.11 16 12 C -0.10 -3.16 4.69 30.59 0.14 -3.02 16 13 C -0.09 -2.22 2.27 -10.68 -0.02 -2.25 16 14 C -0.15 -3.46 5.10 30.68 0.16 -3.30 16 15 C 0.06 1.26 6.84 72.01 0.49 1.75 16 16 O -0.40 -9.51 10.77 -148.98 -1.60 -11.11 16 17 C 0.06 1.19 6.84 72.01 0.49 1.68 16 18 C -0.15 -3.28 5.42 30.69 0.17 -3.12 16 19 C 0.16 6.60 3.42 45.72 0.16 6.75 16 20 C -0.13 -4.49 6.43 31.69 0.20 -4.28 16 21 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 22 C -0.11 -3.75 6.83 31.67 0.22 -3.54 16 23 C -0.13 -5.23 6.24 31.32 0.20 -5.04 16 24 H 0.25 14.00 8.32 -92.71 -0.77 13.23 16 25 H 0.02 0.80 7.90 -2.39 -0.02 0.78 16 26 H 0.06 3.06 5.55 -2.38 -0.01 3.05 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.91 6.66 -2.39 -0.02 1.90 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.80 6.75 -2.39 -0.02 1.79 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 41 H 0.05 1.91 6.64 -2.38 -0.02 1.90 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.04 1.90 7.17 -2.39 -0.02 1.89 16 Total: -1.00 -60.59 362.01 4.07 -56.52 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.88 Total: 18.95 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.11 Total: -27.61 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.35 Total: -83.60 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.60 Total: -11.11 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -60.59 4.07 -56.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361466150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.040 kcal (2) G-P(sol) polarization free energy of solvation -60.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds