Wall clock time and date at job start Tue Mar 31 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47535 * 2 1 4 4 C 1.52995 * 109.46848 * 64.99745 * 3 2 1 5 5 C 1.53004 * 109.46925 * 187.05732 * 4 3 2 6 6 C 1.52995 * 109.47378 * 185.00087 * 3 2 1 7 7 N 1.46893 * 109.47134 * 173.38679 * 6 3 2 8 8 C 1.46902 * 111.00389 * 287.80957 * 7 6 3 9 9 C 1.50692 * 109.47358 * 170.00038 * 8 7 6 10 10 H 1.08001 * 120.00567 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99751 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00272 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99915 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46938 * 59.99607 * 13 11 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47127 * 299.99752 * 13 11 9 17 17 C 1.46903 * 111.00035 * 163.85697 * 7 6 3 18 18 C 1.50695 * 109.47016 * 294.09429 * 17 7 6 19 19 N 1.31069 * 126.65954 * 277.48364 * 18 17 7 20 20 N 1.28843 * 107.98970 * 180.26686 * 19 18 17 21 21 N 1.28738 * 109.39819 * 0.02562 * 20 19 18 22 22 N 1.29021 * 108.80988 * 359.97438 * 21 20 19 23 23 C 1.46501 * 126.44040 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.46739 * 300.00045 * 1 2 3 25 25 H 1.08999 * 109.46849 * 59.99691 * 1 2 3 26 26 H 1.08998 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47251 * 239.99974 * 2 1 3 28 28 H 1.09003 * 109.47337 * 120.00246 * 2 1 3 29 29 H 1.09004 * 109.46570 * 305.00199 * 3 2 1 30 30 H 1.09004 * 109.47702 * 307.05631 * 4 3 2 31 31 H 1.09003 * 109.47415 * 67.05959 * 4 3 2 32 32 H 1.08998 * 109.46776 * 290.75707 * 5 4 3 33 33 H 1.09000 * 109.47435 * 50.76040 * 5 4 3 34 34 H 1.09004 * 109.46863 * 170.76284 * 5 4 3 35 35 H 1.08998 * 109.46968 * 53.38510 * 6 3 2 36 36 H 1.08997 * 109.47193 * 293.38957 * 6 3 2 37 37 H 1.09005 * 109.47182 * 290.00619 * 8 7 6 38 38 H 1.09002 * 109.46627 * 49.99857 * 8 7 6 39 39 H 0.97004 * 119.99809 * 180.02562 * 12 11 9 40 40 H 1.09007 * 109.47308 * 174.09401 * 17 7 6 41 41 H 1.08999 * 109.46811 * 54.09622 * 17 7 6 42 42 H 1.08999 * 109.46701 * 273.67854 * 23 22 21 43 43 H 1.08999 * 109.47207 * 33.67594 * 23 22 21 44 44 H 1.08994 * 109.47334 * 153.68328 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 1.9891 3.6133 1.2357 6 6 3.5649 1.4443 -0.1257 7 7 4.0415 2.8246 -0.2849 8 6 3.7102 3.3456 -1.6179 9 6 3.9891 4.8258 -1.6623 10 1 4.3744 5.3293 -0.7879 11 6 3.7525 5.5375 -2.8192 12 7 3.2839 4.9244 -3.8842 13 14 4.0989 7.3723 -2.8745 14 1 5.5369 7.6132 -2.5928 15 1 3.7639 7.8989 -4.2220 16 1 3.2718 8.0632 -1.8529 17 6 5.4849 2.9161 -0.0277 18 6 5.7577 2.6043 1.4212 19 7 5.6591 3.4329 2.4320 20 7 5.9798 2.7933 3.5035 21 7 6.2809 1.5784 3.2024 22 7 6.1560 1.4226 1.9277 23 6 6.4024 0.1911 1.1733 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6054 1.9815 -0.8419 30 1 0.5615 2.0154 1.4583 31 1 2.1687 1.6658 2.1388 32 1 3.0727 3.7300 1.2500 33 1 1.5901 4.0379 0.3145 34 1 1.5566 4.1313 2.0918 35 1 3.8584 0.8560 -0.9951 36 1 4.0040 1.0095 0.7721 37 1 4.3179 2.8386 -2.3675 38 1 2.6549 3.1683 -1.8253 39 1 3.1178 5.4251 -4.6983 40 1 5.8310 3.9248 -0.2537 41 1 6.0124 2.2010 -0.6589 42 1 7.4589 0.1301 0.9125 43 1 6.1284 -0.6696 1.7833 44 1 5.8032 0.1968 0.2628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362189341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:08 Heat of formation + Delta-G solvation = 112.025305 kcal Electronic energy + Delta-G solvation = -23799.749223 eV Core-core repulsion = 20596.951208 eV Total energy + Delta-G solvation = -3202.798015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.88964 -38.38367 -35.67645 -35.20655 -32.90463 -32.04370 -31.08048 -28.90118 -28.25179 -27.41233 -25.42948 -23.36690 -23.03094 -22.25184 -21.98296 -20.41071 -19.30734 -17.29767 -17.15353 -16.58005 -15.49475 -14.99105 -14.81805 -14.37848 -14.15384 -13.96453 -13.78668 -13.59416 -13.18293 -12.90887 -12.48267 -12.28119 -12.09229 -11.85990 -11.68842 -11.63556 -11.51931 -11.18946 -10.96770 -10.81919 -10.74989 -10.73336 -10.65213 -10.52919 -10.27592 -10.02635 -9.93947 -9.83373 -9.71803 -9.22690 -8.49305 -7.37403 -6.10692 -4.12376 1.46476 2.16301 2.57143 3.32140 3.36262 3.40977 4.25384 4.31330 4.37922 4.61662 4.76065 4.90422 5.04200 5.07549 5.17948 5.26128 5.31979 5.45573 5.59343 5.68684 5.74755 5.78168 5.86128 5.93571 5.99280 6.01194 6.10944 6.14200 6.20565 6.22874 6.38510 6.42978 6.63069 6.70303 6.79975 7.03089 7.04137 7.13972 7.60192 7.68115 7.84165 7.99718 8.35105 8.91354 8.95615 9.53208 10.99628 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.007056 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.532522 B = 3967.022777 C = 5317.600911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.084 4.084 4 C -0.101 4.101 5 C -0.152 4.152 6 C 0.053 3.947 7 N -0.515 5.515 8 C 0.197 3.803 9 C -0.512 4.512 10 H 0.068 0.932 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.135 3.865 18 C 0.211 3.789 19 N -0.286 5.286 20 N -0.082 5.082 21 N -0.112 5.112 22 N -0.316 5.316 23 C 0.077 3.923 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.029 0.971 36 H 0.049 0.951 37 H -0.006 1.006 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -12.134 5.354 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.103 4.103 4 C -0.138 4.138 5 C -0.209 4.209 6 C -0.075 4.075 7 N -0.240 5.240 8 C 0.073 3.927 9 C -0.551 4.551 10 H 0.086 0.914 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.200 1.200 17 C 0.004 3.996 18 C -0.068 4.068 19 N -0.135 5.135 20 N -0.077 5.077 21 N -0.098 5.098 22 N -0.119 5.119 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.011 0.989 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.559 -11.454 6.872 13.448 hybrid contribution 0.486 -0.062 -1.649 1.720 sum 2.045 -11.517 5.223 12.810 Atomic orbital electron populations 1.21796 0.95971 1.00873 1.02200 1.21536 0.95997 0.96987 1.01057 1.21253 0.94491 0.94892 0.99673 1.21412 0.99086 0.97706 0.95605 1.21995 1.05785 0.93374 0.99735 1.22268 0.96136 0.90626 0.98470 1.62339 1.09527 1.17487 1.34661 1.19811 0.97058 0.95249 0.80617 1.21119 1.43557 0.92706 0.97702 0.91432 1.24936 0.95147 0.98547 0.95528 1.69934 1.45045 1.36255 1.02414 0.86598 0.78892 0.85209 0.77005 1.20208 1.21492 1.20014 1.20624 0.92211 1.04790 0.81965 1.26480 0.98075 0.81757 1.00471 1.75081 1.18027 1.25632 0.94762 1.78582 1.12846 0.96430 1.19805 1.78770 1.20202 1.16151 0.94636 1.48429 1.44920 1.12377 1.06152 1.22376 1.04425 0.82868 0.96782 0.92496 0.92560 0.93386 0.92377 0.92822 0.89877 0.93405 0.94219 0.88187 0.92495 0.95889 0.95290 0.93278 0.98858 0.93968 0.92819 0.85378 0.93391 0.88666 0.87828 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.68 37.16 0.36 -1.40 16 2 C -0.12 -1.46 5.40 -26.73 -0.14 -1.61 16 3 C -0.08 -1.29 2.01 -90.62 -0.18 -1.47 16 4 C -0.10 -1.62 5.29 -26.73 -0.14 -1.76 16 5 C -0.15 -2.85 8.93 37.16 0.33 -2.52 16 6 C 0.05 0.82 3.35 -3.83 -0.01 0.80 16 7 N -0.51 -9.36 1.16 -237.52 -0.28 -9.63 16 8 C 0.20 4.41 4.54 -4.98 -0.02 4.39 16 9 C -0.51 -12.96 8.37 -34.44 -0.29 -13.24 16 10 H 0.07 1.72 7.18 -52.49 -0.38 1.35 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -24.85 13.29 55.43 0.74 -24.12 16 13 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.14 2.24 5.06 -4.98 -0.03 2.22 16 18 C 0.21 3.44 6.58 -155.43 -1.02 2.42 16 19 N -0.29 -5.47 12.36 32.70 0.40 -5.07 16 20 N -0.08 -1.54 13.43 60.35 0.81 -0.73 16 21 N -0.11 -1.81 13.29 60.35 0.80 -1.01 16 22 N -0.32 -4.37 3.39 -65.03 -0.22 -4.59 16 23 C 0.08 0.64 10.41 59.85 0.62 1.26 16 24 H 0.06 0.67 6.42 -51.93 -0.33 0.33 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.48 6.36 -51.93 -0.33 1.15 16 30 H 0.05 0.71 6.26 -51.93 -0.33 0.39 16 31 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 32 H 0.10 2.05 5.85 -51.93 -0.30 1.74 16 33 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 36 H 0.05 0.69 5.16 -51.93 -0.27 0.43 16 37 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 38 H 0.04 1.03 6.33 -51.93 -0.33 0.70 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.13 2.38 6.65 -51.92 -0.35 2.03 16 41 H 0.05 0.68 7.37 -51.93 -0.38 0.29 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.80 5.83 -51.93 -0.30 0.50 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -29.45 343.93 -5.28 -34.73 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.07 Total: -1.11 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.62 Total: -9.41 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 2.26 Total: -45.14 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.45 -5.28 -34.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362189341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.752 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds