Wall clock time and date at job start Tue Mar 31 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47535 * 2 1 4 4 C 1.52995 * 109.46848 * 64.99745 * 3 2 1 5 5 C 1.53004 * 109.46925 * 187.05732 * 4 3 2 6 6 C 1.52995 * 109.47378 * 185.00087 * 3 2 1 7 7 N 1.46893 * 109.47134 * 173.38679 * 6 3 2 8 8 C 1.46902 * 111.00389 * 287.80957 * 7 6 3 9 9 C 1.50692 * 109.47358 * 170.00038 * 8 7 6 10 10 H 1.08001 * 120.00567 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99751 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00272 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99915 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46938 * 59.99607 * 13 11 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47127 * 299.99752 * 13 11 9 17 17 C 1.46903 * 111.00035 * 163.85697 * 7 6 3 18 18 C 1.50695 * 109.47016 * 294.09429 * 17 7 6 19 19 N 1.31069 * 126.65954 * 277.48364 * 18 17 7 20 20 N 1.28843 * 107.98970 * 180.26686 * 19 18 17 21 21 N 1.28738 * 109.39819 * 0.02562 * 20 19 18 22 22 N 1.29021 * 108.80988 * 359.97438 * 21 20 19 23 23 C 1.46501 * 126.44040 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.46739 * 300.00045 * 1 2 3 25 25 H 1.08999 * 109.46849 * 59.99691 * 1 2 3 26 26 H 1.08998 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47251 * 239.99974 * 2 1 3 28 28 H 1.09003 * 109.47337 * 120.00246 * 2 1 3 29 29 H 1.09004 * 109.46570 * 305.00199 * 3 2 1 30 30 H 1.09004 * 109.47702 * 307.05631 * 4 3 2 31 31 H 1.09003 * 109.47415 * 67.05959 * 4 3 2 32 32 H 1.08998 * 109.46776 * 290.75707 * 5 4 3 33 33 H 1.09000 * 109.47435 * 50.76040 * 5 4 3 34 34 H 1.09004 * 109.46863 * 170.76284 * 5 4 3 35 35 H 1.08998 * 109.46968 * 53.38510 * 6 3 2 36 36 H 1.08997 * 109.47193 * 293.38957 * 6 3 2 37 37 H 1.09005 * 109.47182 * 290.00619 * 8 7 6 38 38 H 1.09002 * 109.46627 * 49.99857 * 8 7 6 39 39 H 0.97004 * 119.99809 * 180.02562 * 12 11 9 40 40 H 1.09007 * 109.47308 * 174.09401 * 17 7 6 41 41 H 1.08999 * 109.46811 * 54.09622 * 17 7 6 42 42 H 1.08999 * 109.46701 * 273.67854 * 23 22 21 43 43 H 1.08999 * 109.47207 * 33.67594 * 23 22 21 44 44 H 1.08994 * 109.47334 * 153.68328 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 1.9891 3.6133 1.2357 6 6 3.5649 1.4443 -0.1257 7 7 4.0415 2.8246 -0.2849 8 6 3.7102 3.3456 -1.6179 9 6 3.9891 4.8258 -1.6623 10 1 4.3744 5.3293 -0.7879 11 6 3.7525 5.5375 -2.8192 12 7 3.2839 4.9244 -3.8842 13 14 4.0989 7.3723 -2.8745 14 1 5.5369 7.6132 -2.5928 15 1 3.7639 7.8989 -4.2220 16 1 3.2718 8.0632 -1.8529 17 6 5.4849 2.9161 -0.0277 18 6 5.7577 2.6043 1.4212 19 7 5.6591 3.4329 2.4320 20 7 5.9798 2.7933 3.5035 21 7 6.2809 1.5784 3.2024 22 7 6.1560 1.4226 1.9277 23 6 6.4024 0.1911 1.1733 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6054 1.9815 -0.8419 30 1 0.5615 2.0154 1.4583 31 1 2.1687 1.6658 2.1388 32 1 3.0727 3.7300 1.2500 33 1 1.5901 4.0379 0.3145 34 1 1.5566 4.1313 2.0918 35 1 3.8584 0.8560 -0.9951 36 1 4.0040 1.0095 0.7721 37 1 4.3179 2.8386 -2.3675 38 1 2.6549 3.1683 -1.8253 39 1 3.1178 5.4251 -4.6983 40 1 5.8310 3.9248 -0.2537 41 1 6.0124 2.2010 -0.6589 42 1 7.4589 0.1301 0.9125 43 1 6.1284 -0.6696 1.7833 44 1 5.8032 0.1968 0.2628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362189341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:07 Heat of formation + Delta-G solvation = 95.442673 kcal Electronic energy + Delta-G solvation = -23800.468299 eV Core-core repulsion = 20596.951208 eV Total energy + Delta-G solvation = -3203.517092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.15348 -39.75059 -36.89452 -36.45397 -34.73566 -33.47892 -32.34023 -30.06572 -29.69557 -28.74110 -26.90221 -24.81924 -24.39681 -23.58043 -23.26086 -21.74888 -20.62420 -18.64120 -18.37369 -18.20723 -16.92303 -16.51698 -16.38012 -15.73690 -15.36045 -15.13134 -14.91785 -14.67905 -14.46277 -14.18455 -13.91792 -13.67461 -13.40098 -13.21191 -13.06510 -13.01119 -12.87251 -12.71491 -12.59675 -12.40031 -12.16813 -12.09741 -11.97917 -11.81611 -11.77680 -11.42380 -11.32174 -11.23931 -11.12441 -10.89870 -10.50814 -8.84886 -8.14073 -6.20092 0.23451 1.13256 1.22918 1.45042 1.46816 1.53897 2.44942 2.98452 3.18622 3.22823 3.37444 3.82989 3.90193 4.02406 4.18998 4.21650 4.37328 4.40040 4.42595 4.44751 4.53794 4.58242 4.69661 4.70718 4.77676 4.82196 4.85617 5.01013 5.06194 5.13880 5.19376 5.22913 5.28024 5.34404 5.38407 5.42298 5.49736 5.63454 5.73386 6.00865 6.13246 6.25422 6.59772 6.95077 7.48745 7.62103 8.95700 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.007056 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.532522 B = 3967.022777 C = 5317.600911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.083 4.083 4 C -0.092 4.092 5 C -0.145 4.145 6 C 0.055 3.945 7 N -0.523 5.523 8 C 0.219 3.781 9 C -0.515 4.515 10 H 0.060 0.940 11 C 0.014 3.986 12 N -0.928 5.928 13 Si 0.948 3.052 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.140 3.860 18 C 0.209 3.791 19 N -0.319 5.319 20 N -0.112 5.112 21 N -0.104 5.104 22 N -0.297 5.297 23 C 0.060 3.940 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.067 0.933 37 H -0.022 1.022 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -14.234 5.847 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.130 4.130 5 C -0.203 4.203 6 C -0.073 4.073 7 N -0.249 5.249 8 C 0.093 3.907 9 C -0.553 4.553 10 H 0.078 0.922 11 C -0.185 4.185 12 N -0.569 5.569 13 Si 0.775 3.225 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.009 3.991 18 C -0.070 4.070 19 N -0.169 5.169 20 N -0.106 5.106 21 N -0.091 5.091 22 N -0.101 5.101 23 C -0.079 4.079 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.085 0.915 37 H -0.004 1.004 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.197 -13.579 7.376 15.608 hybrid contribution 0.317 0.502 -1.773 1.870 sum 2.514 -13.077 5.603 14.447 Atomic orbital electron populations 1.21795 0.95484 1.02015 1.01541 1.21484 0.96402 0.94697 1.02266 1.21218 0.94492 0.96621 0.97859 1.21335 0.99905 0.95573 0.96174 1.21889 1.04484 0.95585 0.98301 1.22335 0.96144 0.88999 0.99775 1.62131 1.11017 1.19766 1.31937 1.19341 0.95191 0.93770 0.82376 1.21405 1.42387 0.94381 0.97128 0.92194 1.25606 0.95334 1.02063 0.95469 1.70029 1.46477 1.37519 1.02871 0.85751 0.78920 0.81070 0.76770 1.19401 1.21230 1.20338 1.20482 0.91361 1.04460 0.82775 1.26148 0.98663 0.82530 0.99639 1.74998 1.19044 1.27221 0.95654 1.78566 1.14518 0.97316 1.20179 1.78676 1.19434 1.15352 0.95631 1.48750 1.42802 1.13035 1.05492 1.22979 1.06671 0.81244 0.97028 0.92723 0.93708 0.91335 0.91437 0.91217 0.92948 0.92221 0.93839 0.89747 0.95185 0.95757 0.93884 0.91475 1.00401 0.96351 0.92924 0.87811 0.90283 0.85807 0.85287 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.68 71.98 0.70 -2.51 16 2 C -0.11 -2.46 5.40 30.59 0.17 -2.29 16 3 C -0.08 -2.45 2.01 -10.80 -0.02 -2.47 16 4 C -0.09 -2.88 5.29 30.59 0.16 -2.72 16 5 C -0.15 -5.54 8.93 71.98 0.64 -4.90 16 6 C 0.06 1.59 3.35 86.30 0.29 1.88 16 7 N -0.52 -18.90 1.16 -905.39 -1.05 -19.96 16 8 C 0.22 9.99 4.54 85.55 0.39 10.37 16 9 C -0.51 -26.59 8.37 25.60 0.21 -26.38 16 10 H 0.06 3.14 7.18 -2.91 -0.02 3.12 16 11 C 0.01 0.74 5.46 84.66 0.46 1.21 16 12 N -0.93 -52.32 13.29 21.45 0.28 -52.03 16 13 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.14 4.53 5.06 85.55 0.43 4.96 16 18 C 0.21 6.57 6.58 138.13 0.91 7.48 16 19 N -0.32 -12.15 12.36 -50.45 -0.62 -12.77 16 20 N -0.11 -4.11 13.43 37.01 0.50 -3.61 16 21 N -0.10 -3.18 13.29 37.02 0.49 -2.69 16 22 N -0.30 -7.42 3.39 -359.66 -1.22 -8.64 16 23 C 0.06 0.74 10.41 127.77 1.33 2.07 16 24 H 0.05 1.17 6.42 -2.39 -0.02 1.16 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.89 6.36 -2.38 -0.02 1.88 16 30 H 0.06 1.71 6.26 -2.39 -0.01 1.70 16 31 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.08 3.51 5.85 -2.39 -0.01 3.50 16 33 H 0.03 1.26 8.08 -2.39 -0.02 1.25 16 34 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 36 H 0.07 1.70 5.16 -2.39 -0.01 1.69 16 37 H -0.02 -1.05 8.12 -2.38 -0.02 -1.07 16 38 H 0.02 0.94 6.33 -2.39 -0.02 0.92 16 39 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 40 H 0.10 3.89 6.65 -2.38 -0.02 3.88 16 41 H 0.08 2.05 7.37 -2.39 -0.02 2.03 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.11 1.25 5.83 -2.39 -0.01 1.23 16 Total: -1.00 -65.35 343.93 7.06 -58.29 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.98 Total: 9.53 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.67 Total: -13.30 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -1.62 Total: -99.71 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -65.35 7.06 -58.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362189341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.734 kcal (2) G-P(sol) polarization free energy of solvation -65.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds