Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99761 * 2 1 4 4 H 1.48505 * 109.46957 * 270.00107 * 3 2 1 5 5 H 1.48499 * 109.47144 * 29.99751 * 3 2 1 6 6 H 1.48493 * 109.46952 * 150.00182 * 3 2 1 7 7 C 1.37874 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00691 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47352 * 180.02562 * 10 9 7 12 12 N 1.46909 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.46839 * 110.99926 * 294.21132 * 12 11 10 14 14 C 1.53040 * 109.52538 * 174.15788 * 13 12 11 15 15 C 1.53122 * 109.27351 * 59.17810 * 14 13 12 16 16 C 1.53117 * 109.16162 * 302.34367 * 15 14 13 17 17 H 1.09000 * 109.53778 * 297.70049 * 16 15 14 18 18 C 1.53004 * 109.50542 * 177.59726 * 16 15 14 19 19 C 1.52998 * 109.47002 * 65.19677 * 18 16 15 20 20 H 1.09000 * 110.54243 * 303.83858 * 19 18 16 21 21 C 1.54807 * 110.48933 * 181.22194 * 19 18 16 22 22 C 1.54994 * 102.09494 * 220.44755 * 21 19 18 23 23 O 1.44380 * 103.49110 * 37.01885 * 22 21 19 24 24 C 1.43739 * 106.97820 * 319.94499 * 23 22 21 25 25 C 1.46843 * 110.99901 * 169.99455 * 12 11 10 26 26 H 0.96998 * 120.00247 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46946 * 59.99751 * 9 7 2 28 28 H 1.09000 * 109.47125 * 299.99972 * 9 7 2 29 29 H 1.09008 * 109.47102 * 59.99409 * 10 9 7 30 30 H 1.09007 * 109.47219 * 300.00036 * 10 9 7 31 31 H 1.08997 * 109.47568 * 60.00073 * 11 10 9 32 32 H 1.09000 * 109.47039 * 299.99779 * 11 10 9 33 33 H 1.08999 * 109.46259 * 294.17820 * 13 12 11 34 34 H 1.09004 * 109.46281 * 54.14159 * 13 12 11 35 35 H 1.08996 * 109.50399 * 179.11304 * 14 13 12 36 36 H 1.08999 * 109.50322 * 299.20167 * 14 13 12 37 37 H 1.09004 * 109.51791 * 182.44229 * 15 14 13 38 38 H 1.08995 * 109.52310 * 62.25151 * 15 14 13 39 39 H 1.08998 * 109.46905 * 305.20167 * 18 16 15 40 40 H 1.08998 * 109.46946 * 185.19868 * 18 16 15 41 41 H 1.09005 * 110.90346 * 338.64489 * 21 19 18 42 42 H 1.09000 * 110.90998 * 102.24225 * 21 19 18 43 43 H 1.08998 * 110.61564 * 278.52047 * 22 21 19 44 44 H 1.08994 * 110.75808 * 155.58946 * 22 21 19 45 45 H 1.09004 * 109.87903 * 267.08704 * 24 23 22 46 46 H 1.08997 * 110.00609 * 146.00467 * 24 23 22 47 47 H 1.09000 * 109.45829 * 65.82676 * 25 12 11 48 48 H 1.08995 * 109.45511 * 305.85196 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0414 -4.0214 0.0027 13 6 5.6858 -4.7049 1.2528 14 6 6.0815 -6.1803 1.1595 15 6 7.5886 -6.2845 0.9098 16 6 7.9395 -5.5239 -0.3719 17 1 7.4306 -5.9832 -1.2193 18 6 9.4521 -5.5724 -0.5969 19 6 9.8827 -7.0170 -0.8584 20 1 9.5709 -7.6635 -0.0380 21 6 11.4156 -7.0976 -1.0592 22 6 11.5378 -8.1153 -2.2218 23 8 10.4082 -7.8013 -3.0644 24 6 9.2999 -7.5203 -2.1933 25 6 7.4898 -4.0675 -0.2343 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6799 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1501 -0.8893 30 1 3.6580 -3.1505 0.8908 31 1 5.9143 -2.1229 0.8927 32 1 5.9157 -2.1223 -0.8873 33 1 6.2142 -4.2389 2.0845 34 1 4.6109 -4.6268 1.4163 35 1 5.8317 -6.6837 2.0934 36 1 5.5424 -6.6504 0.3371 37 1 7.8678 -7.3324 0.7995 38 1 8.1281 -5.8494 1.7510 39 1 9.9634 -5.1955 0.2889 40 1 9.7115 -4.9546 -1.4566 41 1 11.8217 -6.1278 -1.3469 42 1 11.9064 -7.4723 -0.1610 43 1 11.4651 -9.1364 -1.8473 44 1 12.4725 -7.9723 -2.7638 45 1 8.7206 -8.4283 -2.0258 46 1 8.6650 -6.7516 -2.6337 47 1 8.0099 -3.6046 0.6044 48 1 7.7251 -3.5266 -1.1508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369416189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -76.142862 kcal Electronic energy + Delta-G solvation = -22413.838859 eV Core-core repulsion = 19274.128853 eV Total energy + Delta-G solvation = -3139.710006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11840 -38.91645 -35.67912 -33.85843 -32.64378 -31.34882 -31.09671 -29.34331 -27.05637 -26.02507 -24.10092 -23.20790 -22.32169 -21.55347 -20.37746 -19.79339 -19.50103 -16.92635 -16.69088 -16.40652 -15.73926 -15.27240 -15.04967 -14.68997 -14.31447 -14.17124 -14.06070 -13.56506 -13.51317 -13.15258 -12.94988 -12.58561 -12.53659 -12.29263 -11.90978 -11.79291 -11.54372 -11.39837 -11.21407 -11.10608 -11.02747 -10.88615 -10.79416 -10.60816 -10.31087 -10.25358 -9.94024 -9.85417 -9.62163 -9.49496 -9.13274 -8.50649 -8.08049 -6.01134 -3.98633 3.32497 3.39523 3.43351 3.63956 3.97304 4.19983 4.36141 4.47814 4.53410 4.71656 4.74605 4.81727 4.91155 4.93009 5.06446 5.19899 5.31399 5.32755 5.34079 5.40250 5.43165 5.48206 5.54136 5.57327 5.59463 5.61205 5.69602 5.71022 5.77680 5.83968 5.89450 5.95177 6.08614 6.11596 6.18164 6.23236 6.36187 6.57235 6.59134 6.62428 6.95630 7.30840 7.33050 7.41612 7.50905 7.83817 8.58468 9.04569 9.61630 11.12469 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.002699 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.720484 B =10370.885542 C =10627.050398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.052 3.948 14 C -0.117 4.117 15 C -0.114 4.114 16 C -0.086 4.086 17 H 0.081 0.919 18 C -0.104 4.104 19 C -0.121 4.121 20 H 0.085 0.915 21 C -0.152 4.152 22 C 0.045 3.955 23 O -0.380 6.380 24 C 0.048 3.952 25 C 0.061 3.939 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.028 0.972 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.169 -15.898 0.564 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.262 5.262 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.105 4.105 17 H 0.099 0.901 18 C -0.142 4.142 19 C -0.140 4.140 20 H 0.103 0.897 21 C -0.190 4.190 22 C -0.032 4.032 23 O -0.299 6.299 24 C -0.028 4.028 25 C -0.067 4.067 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.046 0.954 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.771 -16.015 -0.045 28.662 hybrid contribution 0.715 1.400 0.978 1.851 sum 24.485 -14.614 0.933 28.530 Atomic orbital electron populations 1.69922 1.06281 1.26797 1.51426 1.25046 0.94740 0.99167 0.94689 0.86765 0.80299 0.83646 0.78475 1.20304 1.21460 1.19115 1.21151 0.89528 0.94432 1.50415 0.91036 1.19555 0.97151 0.92406 0.96028 1.21477 0.90994 0.99428 1.01589 1.22295 0.98017 0.86948 1.00015 1.61934 1.12453 1.16898 1.34880 1.22140 1.01675 0.93802 0.90008 1.21590 0.95745 0.96336 1.01810 1.21665 0.96474 0.99837 0.97225 1.21254 0.94553 0.95916 0.98795 0.90088 1.21641 0.95643 0.94943 1.02009 1.22596 0.94862 0.98187 0.98356 0.89661 1.23222 0.96024 1.00613 0.99141 1.23535 0.90469 0.97676 0.91485 1.88883 1.20272 1.89990 1.30771 1.23331 0.89584 1.00167 0.89743 1.22083 0.88377 0.95930 1.00353 0.92807 0.96936 0.97111 0.91997 0.92872 0.95533 0.91306 0.95464 0.89846 0.91827 0.91073 0.92046 0.92495 0.91698 0.91387 0.90322 0.90347 0.92375 0.89161 0.92493 0.89243 0.95428 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.97 5.08 -26.73 -0.14 -2.10 16 11 C 0.05 0.91 4.96 -3.82 -0.02 0.89 16 12 N -0.54 -7.78 4.66 -234.67 -1.09 -8.87 16 13 C 0.05 0.69 5.29 -3.84 -0.02 0.67 16 14 C -0.12 -1.26 6.09 -26.65 -0.16 -1.42 16 15 C -0.11 -1.05 5.00 -26.61 -0.13 -1.18 16 16 C -0.09 -0.82 2.23 -90.54 -0.20 -1.03 16 17 H 0.08 0.84 6.76 -51.93 -0.35 0.49 16 18 C -0.10 -0.82 3.91 -26.73 -0.10 -0.92 16 19 C -0.12 -0.87 2.89 -89.09 -0.26 -1.13 16 20 H 0.09 0.57 6.54 -51.93 -0.34 0.23 16 21 C -0.15 -0.97 6.71 -24.73 -0.17 -1.13 16 22 C 0.05 0.32 7.72 38.21 0.29 0.62 16 23 O -0.38 -3.94 11.52 -35.23 -0.41 -4.34 16 24 C 0.05 0.42 6.86 37.74 0.26 0.68 16 25 C 0.06 0.72 4.74 -3.83 -0.02 0.70 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.05 1.08 6.43 -51.93 -0.33 0.74 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.23 6.21 -51.93 -0.32 0.91 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.48 6.64 -51.93 -0.34 0.14 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.81 6.72 -51.93 -0.35 0.46 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -31.39 359.07 -10.32 -41.71 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -9.13 Total: -4.37 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.21 Total: -19.36 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.32 Total: -36.45 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.41 Total: -4.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.39 -10.32 -41.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369416189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.437 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds