Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48496 * 109.47309 * 270.00213 * 3 2 1 5 5 H 1.48508 * 109.47112 * 30.00041 * 3 2 1 6 6 H 1.48496 * 109.47390 * 149.99721 * 3 2 1 7 7 C 1.37886 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00225 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46824 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.46841 * 111.00271 * 45.78857 * 12 11 10 14 14 C 1.53034 * 109.52521 * 185.84382 * 13 12 11 15 15 C 1.53128 * 109.30602 * 300.84037 * 14 13 12 16 16 C 1.53111 * 109.15871 * 57.59397 * 15 14 13 17 17 H 1.09003 * 109.50448 * 62.36781 * 16 15 14 18 18 C 1.53006 * 109.50436 * 182.44274 * 16 15 14 19 19 C 1.52997 * 109.47276 * 185.61102 * 18 16 15 20 20 H 1.08996 * 110.75226 * 302.04221 * 19 18 16 21 21 C 1.55309 * 110.84666 * 178.34616 * 19 18 16 22 22 C 1.54942 * 100.94166 * 207.67356 * 21 19 18 23 23 O 1.43654 * 105.13465 * 36.44879 * 22 21 19 24 24 C 1.43239 * 109.96739 * 335.56913 * 23 22 21 25 25 C 1.46846 * 110.99613 * 170.00070 * 12 11 10 26 26 H 0.96999 * 119.99666 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47223 * 60.00229 * 9 7 2 28 28 H 1.09005 * 109.46838 * 300.00133 * 9 7 2 29 29 H 1.08999 * 109.47385 * 59.99780 * 10 9 7 30 30 H 1.08996 * 109.46902 * 299.99430 * 10 9 7 31 31 H 1.08999 * 109.47425 * 59.99675 * 11 10 9 32 32 H 1.09005 * 109.46827 * 299.99462 * 11 10 9 33 33 H 1.09007 * 109.46111 * 305.85489 * 13 12 11 34 34 H 1.08996 * 109.46547 * 65.83325 * 13 12 11 35 35 H 1.08999 * 109.50602 * 60.75838 * 14 13 12 36 36 H 1.09000 * 109.50564 * 180.84257 * 14 13 12 37 37 H 1.09007 * 109.49102 * 297.70878 * 15 14 13 38 38 H 1.08995 * 109.55599 * 177.52302 * 15 14 13 39 39 H 1.09008 * 109.46623 * 65.60996 * 18 16 15 40 40 H 1.08996 * 109.47157 * 305.61624 * 18 16 15 41 41 H 1.08993 * 111.12499 * 325.59838 * 21 19 18 42 42 H 1.09009 * 111.12173 * 89.76062 * 21 19 18 43 43 H 1.08997 * 110.31454 * 277.53018 * 22 21 19 44 44 H 1.09003 * 110.30793 * 155.36019 * 22 21 19 45 45 H 1.09002 * 109.82922 * 121.23039 * 24 23 22 46 46 H 1.09004 * 109.82507 * 242.19770 * 24 23 22 47 47 H 1.09001 * 109.46608 * 54.14269 * 25 12 11 48 48 H 1.08997 * 109.45208 * 294.16519 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 7 6.0412 -4.0217 -0.0004 13 6 5.3154 -4.8361 -0.9833 14 6 5.7479 -6.2984 -0.8551 15 6 7.2570 -6.4027 -1.0926 16 6 7.9869 -5.5071 -0.0880 17 1 7.7866 -5.8575 0.9246 18 6 9.4922 -5.5581 -0.3576 19 6 10.2319 -4.7765 0.7300 20 1 9.8860 -3.7435 0.7661 21 6 11.7679 -4.8424 0.5101 22 6 12.2803 -4.6798 1.9633 23 8 11.3310 -5.3872 2.7770 24 6 10.0682 -5.4591 2.1049 25 6 7.4895 -4.0676 -0.2384 26 1 -0.4849 0.8401 -0.0004 27 1 3.8753 -0.6798 0.8895 28 1 3.8746 -0.6809 -0.8906 29 1 3.6578 -3.1507 -0.8896 30 1 3.6586 -3.1502 0.8903 31 1 5.9149 -2.1227 0.8900 32 1 5.9149 -2.1229 -0.8900 33 1 4.2438 -4.7570 -0.8001 34 1 5.5395 -4.4780 -1.9881 35 1 5.5116 -6.6615 0.1452 36 1 5.2200 -6.9003 -1.5948 37 1 7.4890 -6.0770 -2.1067 38 1 7.5768 -7.4361 -0.9590 39 1 9.7022 -5.1142 -1.3307 40 1 9.8275 -6.5952 -0.3514 41 1 12.0643 -5.8054 0.0944 42 1 12.1100 -4.0220 -0.1211 43 1 12.3048 -3.6259 2.2402 44 1 13.2711 -5.1221 2.0668 45 1 9.7808 -6.5016 1.9683 46 1 9.3088 -4.9383 2.6882 47 1 7.9971 -3.4304 0.4858 48 1 7.7031 -3.7131 -1.2467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369416190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = -74.487620 kcal Electronic energy + Delta-G solvation = -22591.966408 eV Core-core repulsion = 19452.328178 eV Total energy + Delta-G solvation = -3139.638230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08841 -38.94441 -35.70224 -33.89766 -32.79143 -31.23312 -31.11157 -29.28529 -27.14841 -25.97715 -24.08802 -23.16088 -22.49257 -21.37638 -20.58232 -19.59418 -19.51920 -17.08050 -16.70619 -16.25895 -15.75826 -15.19260 -14.94258 -14.85884 -14.33774 -14.17687 -13.72876 -13.62518 -13.49332 -13.26262 -13.08553 -12.67306 -12.54805 -12.26647 -11.82125 -11.74454 -11.63248 -11.57196 -11.37998 -10.99532 -10.92362 -10.90423 -10.75684 -10.59090 -10.30998 -10.14371 -9.94690 -9.77314 -9.62506 -9.54265 -9.13566 -8.52473 -8.07266 -6.02976 -4.00645 3.30999 3.38486 3.42494 3.60801 4.00630 4.17903 4.28954 4.46326 4.57703 4.73488 4.76747 4.83073 4.95585 4.96373 5.09454 5.16858 5.31003 5.35261 5.35979 5.38579 5.45473 5.52222 5.55343 5.57729 5.59906 5.64325 5.70006 5.72704 5.81527 5.82032 5.88876 5.98566 6.06162 6.11917 6.16085 6.22053 6.36671 6.56134 6.60949 6.72903 6.90235 7.29352 7.33547 7.37534 7.46756 7.81678 8.56054 9.02314 9.59754 11.10613 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.003151 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.200242 B = 8884.073958 C = 9753.367164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.104 4.104 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.047 3.953 14 C -0.117 4.117 15 C -0.114 4.114 16 C -0.086 4.086 17 H 0.080 0.920 18 C -0.102 4.102 19 C -0.124 4.124 20 H 0.088 0.912 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.388 6.388 24 C 0.055 3.945 25 C 0.060 3.940 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.008 0.992 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.938 -12.651 -1.318 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.073 4.073 12 N -0.262 5.262 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.105 4.105 17 H 0.099 0.901 18 C -0.140 4.140 19 C -0.142 4.142 20 H 0.106 0.894 21 C -0.191 4.191 22 C -0.026 4.026 23 O -0.307 6.307 24 C -0.021 4.021 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 23.726 -12.811 -0.650 26.971 hybrid contribution 0.428 1.497 -1.103 1.908 sum 24.154 -11.313 -1.753 26.730 Atomic orbital electron populations 1.69920 1.06295 1.26831 1.51335 1.25044 0.94735 0.99177 0.94637 0.86767 0.80388 0.83642 0.78413 1.20406 1.21392 1.19016 1.21147 0.89509 0.94436 1.50556 0.91057 1.19548 0.97157 0.92284 0.96090 1.21621 0.91175 0.99824 1.01590 1.22299 0.97696 0.87280 1.00033 1.61986 1.02860 1.11751 1.49618 1.22226 1.00014 0.92704 0.93104 1.21595 0.95257 0.96328 1.02299 1.21622 0.95687 0.99158 0.98741 1.21240 0.93271 0.95469 1.00526 0.90129 1.21584 0.94449 1.00016 0.97915 1.22802 0.94985 1.01066 0.95360 0.89366 1.23336 0.95178 1.03135 0.97450 1.23355 0.93220 0.96805 0.89256 1.88402 1.21217 1.77288 1.43837 1.23251 0.86121 1.00706 0.92058 1.22136 0.89103 0.96309 0.99236 0.92780 0.96598 0.97355 0.92566 0.91908 0.91164 0.95550 0.89271 0.95357 0.91147 0.91741 0.92450 0.92084 0.91556 0.91432 0.90332 0.89986 0.92237 0.89962 0.91117 0.91124 0.91092 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.09 4.40 -26.73 -0.12 -2.20 16 11 C 0.05 0.90 5.27 -3.82 -0.02 0.88 16 12 N -0.54 -7.73 4.81 -234.67 -1.13 -8.85 16 13 C 0.05 0.65 4.85 -3.84 -0.02 0.63 16 14 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 15 C -0.11 -1.08 5.29 -26.61 -0.14 -1.22 16 16 C -0.09 -0.82 2.26 -90.54 -0.20 -1.02 16 17 H 0.08 0.83 7.26 -51.93 -0.38 0.45 16 18 C -0.10 -0.77 4.07 -26.73 -0.11 -0.88 16 19 C -0.12 -0.97 2.81 -88.68 -0.25 -1.22 16 20 H 0.09 0.74 6.61 -51.93 -0.34 0.39 16 21 C -0.15 -1.03 6.62 -24.48 -0.16 -1.20 16 22 C 0.05 0.39 7.78 38.18 0.30 0.69 16 23 O -0.39 -4.22 11.36 -35.23 -0.40 -4.62 16 24 C 0.05 0.51 6.44 37.88 0.24 0.75 16 25 C 0.06 0.70 4.47 -3.83 -0.02 0.69 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 29 H 0.06 1.12 6.21 -51.93 -0.32 0.79 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.09 1.35 5.81 -51.93 -0.30 1.05 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 42 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.81 6.60 -51.93 -0.34 0.46 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -31.16 359.20 -10.41 -41.56 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -9.19 Total: -3.88 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.20 Total: -19.48 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.35 Total: -36.31 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.40 Total: -4.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.16 -10.41 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369416190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.923 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds