Wall clock time and date at job start Tue Mar 31 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48505 * 109.47262 * 269.99896 * 3 2 1 5 5 H 1.48500 * 109.47331 * 30.00301 * 3 2 1 6 6 H 1.48498 * 109.46932 * 149.99862 * 3 2 1 7 7 C 1.37872 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00128 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00108 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47272 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.46842 * 111.00192 * 66.05041 * 12 11 10 14 14 C 1.53039 * 109.52666 * 185.84212 * 13 12 11 15 15 C 1.53123 * 109.27546 * 300.81951 * 14 13 12 16 16 C 1.53120 * 109.21163 * 57.62218 * 15 14 13 17 17 H 1.09000 * 109.50719 * 62.32149 * 16 15 14 18 18 C 1.53008 * 109.50107 * 182.43700 * 16 15 14 19 19 C 1.53002 * 109.46941 * 294.99767 * 18 16 15 20 20 H 1.08997 * 110.74788 * 57.02322 * 19 18 16 21 21 C 1.55303 * 110.84368 * 180.71522 * 19 18 16 22 22 C 1.54947 * 100.94025 * 152.32634 * 21 19 18 23 23 O 1.43647 * 105.13757 * 323.55384 * 22 21 19 24 24 C 1.43240 * 109.96672 * 24.43044 * 23 22 21 25 25 C 1.46848 * 110.99938 * 190.25970 * 12 11 10 26 26 H 0.97001 * 119.99929 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46839 * 60.00104 * 9 7 2 28 28 H 1.09001 * 109.46889 * 300.00457 * 9 7 2 29 29 H 1.09001 * 109.47135 * 60.00352 * 10 9 7 30 30 H 1.09000 * 109.47706 * 300.00593 * 10 9 7 31 31 H 1.09001 * 109.46580 * 60.00224 * 11 10 9 32 32 H 1.09000 * 109.47412 * 300.00984 * 11 10 9 33 33 H 1.09001 * 109.46203 * 65.82095 * 13 12 11 34 34 H 1.09004 * 109.46228 * 305.85648 * 13 12 11 35 35 H 1.08999 * 109.50420 * 180.88146 * 14 13 12 36 36 H 1.09001 * 109.50541 * 60.75500 * 14 13 12 37 37 H 1.09002 * 109.52319 * 177.56011 * 15 14 13 38 38 H 1.08995 * 109.52318 * 297.68693 * 15 14 13 39 39 H 1.08998 * 109.46955 * 55.00115 * 18 16 15 40 40 H 1.09002 * 109.46834 * 175.00130 * 18 16 15 41 41 H 1.09008 * 111.12708 * 270.24022 * 21 19 18 42 42 H 1.09000 * 111.12940 * 34.40728 * 21 19 18 43 43 H 1.09000 * 110.30973 * 204.64080 * 22 21 19 44 44 H 1.09004 * 110.31193 * 82.47037 * 22 21 19 45 45 H 1.09007 * 109.82602 * 238.77705 * 24 23 22 46 46 H 1.08997 * 109.83249 * 117.80497 * 24 23 22 47 47 H 1.08999 * 109.46555 * 294.17605 * 25 12 11 48 48 H 1.09000 * 109.46248 * 54.14574 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5516 -2.6365 0.0001 12 7 6.0413 -4.0214 0.0009 13 6 5.6910 -4.7041 -1.2511 14 6 6.0863 -6.1795 -1.1571 15 6 7.5924 -6.2840 -0.9010 16 6 7.9392 -5.5238 0.3821 17 1 7.4271 -5.9836 1.2273 18 6 9.4511 -5.5725 0.6118 19 6 9.8814 -7.0180 0.8695 20 1 9.5875 -7.6619 0.0406 21 6 11.4110 -7.1021 1.1250 22 6 11.4902 -8.3618 2.0237 23 8 10.3156 -8.3084 2.8488 24 6 9.2977 -7.5360 2.2014 25 6 7.4887 -4.0676 0.2439 26 1 -0.4850 0.8401 -0.0004 27 1 3.8753 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8905 29 1 3.6580 -3.1512 -0.8879 30 1 3.6586 -3.1494 0.8920 31 1 5.9156 -2.1215 0.8892 32 1 5.9143 -2.1236 -0.8907 33 1 6.2231 -4.2376 -2.0803 34 1 4.6169 -4.6259 -1.4192 35 1 5.8405 -6.6825 -2.0923 36 1 5.5442 -6.6500 -0.3367 37 1 7.8712 -7.3319 -0.7902 38 1 8.1355 -5.8494 -1.7400 39 1 9.9652 -5.1922 -0.2708 40 1 9.7075 -4.9579 1.4747 41 1 11.9575 -7.2492 0.1934 42 1 11.7701 -6.2191 1.6537 43 1 12.3879 -8.3303 2.6411 44 1 11.4822 -9.2641 1.4120 45 1 9.0145 -6.6941 2.8332 46 1 8.4272 -8.1619 2.0051 47 1 8.0124 -3.6042 -0.5922 48 1 7.7203 -3.5272 1.1618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369416192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:31 Heat of formation + Delta-G solvation = -77.060894 kcal Electronic energy + Delta-G solvation = -22389.618776 eV Core-core repulsion = 19249.868961 eV Total energy + Delta-G solvation = -3139.749815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10400 -38.93745 -35.70638 -33.88538 -32.66028 -31.35826 -31.10737 -29.41875 -27.06947 -26.03656 -24.09753 -23.05988 -22.31229 -21.64823 -20.45317 -19.80028 -19.51355 -17.10103 -16.68835 -16.31356 -15.75425 -15.08682 -15.07475 -14.68492 -14.31882 -14.20773 -14.00671 -13.57662 -13.54071 -13.39743 -13.03314 -12.60469 -12.53688 -12.25269 -11.85650 -11.82364 -11.65065 -11.40209 -11.25963 -11.15019 -11.00437 -10.89503 -10.76806 -10.60852 -10.32667 -10.25251 -9.89556 -9.81732 -9.62411 -9.49667 -9.13316 -8.51088 -8.08862 -6.01450 -3.98966 3.31814 3.39185 3.43172 3.56260 3.95813 4.12278 4.34405 4.47439 4.53764 4.70074 4.71696 4.81746 4.89796 4.93724 5.02573 5.20187 5.29123 5.32386 5.34035 5.40482 5.43758 5.47628 5.51579 5.55290 5.57888 5.60030 5.68127 5.68674 5.78539 5.83179 5.88813 5.94971 6.07619 6.10261 6.17264 6.22514 6.35333 6.58840 6.61749 6.68744 6.94558 7.30382 7.32385 7.41603 7.49970 7.83447 8.58120 9.04261 9.61295 11.12142 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034677 B = 0.002668 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.251977 B =10491.816736 C =10704.637898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.537 5.537 13 C 0.052 3.948 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.086 4.086 17 H 0.081 0.919 18 C -0.103 4.103 19 C -0.121 4.121 20 H 0.087 0.913 21 C -0.154 4.154 22 C 0.050 3.950 23 O -0.388 6.388 24 C 0.054 3.946 25 C 0.061 3.939 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.008 0.992 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.027 0.973 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.263 -15.287 -0.450 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.262 5.262 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.105 4.105 17 H 0.099 0.901 18 C -0.141 4.141 19 C -0.140 4.140 20 H 0.105 0.895 21 C -0.191 4.191 22 C -0.026 4.026 23 O -0.307 6.307 24 C -0.022 4.022 25 C -0.067 4.067 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.847 -15.504 0.133 28.444 hybrid contribution 0.745 1.532 -0.987 1.968 sum 24.591 -13.973 -0.854 28.296 Atomic orbital electron populations 1.69922 1.06281 1.26796 1.51412 1.25047 0.94740 0.99164 0.94691 0.86767 0.80372 0.83664 0.78398 1.20416 1.21420 1.19037 1.21152 0.89526 0.94434 1.50421 0.91033 1.19555 0.97155 0.92405 0.96023 1.21474 0.90985 0.99424 1.01598 1.22294 0.98032 0.86932 1.00009 1.61927 1.12592 1.16932 1.34705 1.22141 1.01693 0.93807 0.89976 1.21590 0.95739 0.96336 1.01816 1.21667 0.96521 0.99849 0.97193 1.21234 0.94461 0.95945 0.98833 0.90090 1.21572 0.95768 0.94645 1.02101 1.22775 0.94660 0.98191 0.98327 0.89455 1.23343 0.96285 0.98898 1.00621 1.23353 0.88912 0.97204 0.93157 1.88408 1.24252 1.73600 1.44457 1.23264 0.90972 0.95169 0.92821 1.22082 0.88414 0.95905 1.00338 0.92805 0.96677 0.97374 0.92897 0.91969 0.91309 0.95534 0.95457 0.89843 0.91804 0.91059 0.92045 0.92492 0.91557 0.91408 0.90015 0.90227 0.89923 0.92333 0.90882 0.91360 0.95432 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.96 5.09 -26.73 -0.14 -2.09 16 11 C 0.05 0.91 4.96 -3.83 -0.02 0.89 16 12 N -0.54 -7.72 4.66 -234.67 -1.09 -8.82 16 13 C 0.05 0.69 5.29 -3.84 -0.02 0.67 16 14 C -0.12 -1.26 6.10 -26.65 -0.16 -1.42 16 15 C -0.11 -1.04 4.99 -26.61 -0.13 -1.18 16 16 C -0.09 -0.81 2.27 -90.53 -0.21 -1.01 16 17 H 0.08 0.83 7.35 -51.93 -0.38 0.45 16 18 C -0.10 -0.77 4.08 -26.73 -0.11 -0.88 16 19 C -0.12 -0.86 2.81 -88.68 -0.25 -1.11 16 20 H 0.09 0.60 6.58 -51.93 -0.34 0.26 16 21 C -0.15 -0.96 6.62 -24.48 -0.16 -1.12 16 22 C 0.05 0.36 7.78 38.19 0.30 0.66 16 23 O -0.39 -4.02 11.36 -35.23 -0.40 -4.42 16 24 C 0.05 0.47 6.49 37.88 0.25 0.72 16 25 C 0.06 0.71 4.74 -3.83 -0.02 0.69 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 29 H 0.05 1.07 6.43 -51.93 -0.33 0.73 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.23 6.22 -51.93 -0.32 0.91 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.49 6.65 -51.93 -0.35 0.14 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.51 8.07 -51.93 -0.42 0.10 16 41 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -31.33 360.41 -10.39 -41.73 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -9.22 Total: -4.57 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.21 Total: -19.17 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.32 Total: -36.36 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.40 Total: -4.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.33 -10.39 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369416192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.334 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds