Wall clock time and date at job start Tue Mar 31 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47542 * 2 1 4 4 C 1.53001 * 109.47049 * 120.00269 * 2 1 3 5 5 C 1.50700 * 109.47071 * 299.99220 * 4 2 1 6 6 H 1.07997 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99913 * 179.72175 * 5 4 2 8 8 N 1.31508 * 120.00292 * 0.28577 * 7 5 4 9 9 Si 1.86803 * 119.99692 * 180.27835 * 7 5 4 10 10 H 1.48498 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47050 * 120.00776 * 9 7 5 12 12 H 1.48508 * 109.47083 * 240.00205 * 9 7 5 13 13 C 1.53008 * 109.46684 * 239.99670 * 2 1 3 14 14 N 1.46897 * 109.46882 * 44.02045 * 13 2 1 15 15 C 1.48536 * 111.00197 * 59.68883 * 14 13 2 16 16 C 1.54934 * 103.22635 * 159.72070 * 15 14 13 17 17 C 1.54594 * 102.92357 * 322.58393 * 16 15 14 18 18 H 1.09002 * 110.31107 * 263.04383 * 17 16 15 19 19 C 1.53003 * 110.30945 * 140.87209 * 17 16 15 20 20 H 1.08995 * 110.45789 * 303.58736 * 19 17 16 21 21 C 1.54510 * 110.50914 * 66.19292 * 19 17 16 22 22 C 1.54475 * 104.06449 * 118.64282 * 21 19 17 23 23 O 1.44427 * 104.80560 * 23.97711 * 22 21 19 24 24 C 1.44646 * 105.36728 * 319.56711 * 23 22 21 25 25 C 1.47905 * 110.99796 * 177.08368 * 14 13 2 26 26 H 1.09006 * 109.46935 * 300.00144 * 1 2 3 27 27 H 1.08996 * 109.47367 * 59.99667 * 1 2 3 28 28 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47232 * 200.59756 * 3 2 1 30 30 H 1.09002 * 109.46920 * 320.59120 * 3 2 1 31 31 H 1.08993 * 109.47373 * 80.58927 * 3 2 1 32 32 H 1.09003 * 109.47172 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47287 * 59.99641 * 4 2 1 34 34 H 0.96994 * 120.00301 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46635 * 164.01335 * 13 2 1 36 36 H 1.08998 * 109.47032 * 284.01444 * 13 2 1 37 37 H 1.08994 * 110.66727 * 278.15226 * 15 14 13 38 38 H 1.09001 * 110.66906 * 41.28143 * 15 14 13 39 39 H 1.09000 * 110.72185 * 204.23037 * 16 15 14 40 40 H 1.09001 * 110.87608 * 81.01512 * 16 15 14 41 41 H 1.09001 * 110.51042 * 237.28672 * 21 19 17 42 42 H 1.08999 * 110.51313 * 359.85819 * 21 19 17 43 43 H 1.09005 * 110.37289 * 142.80795 * 22 21 19 44 44 H 1.08998 * 110.37528 * 265.14713 * 22 21 19 45 45 H 1.08997 * 110.33975 * 281.58926 * 24 23 22 46 46 H 1.08997 * 110.51221 * 159.18138 * 24 23 22 47 47 H 1.08997 * 109.91915 * 333.50777 * 25 14 13 48 48 H 1.09000 * 109.91225 * 94.80283 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5378 -0.0108 2.4797 6 1 0.9167 0.8671 2.3806 7 6 1.8662 -0.4853 3.7319 8 7 2.6222 -1.5545 3.8526 9 14 1.2372 0.3909 5.2571 10 1 0.4129 1.5581 4.8530 11 1 0.4095 -0.5450 6.0597 12 1 2.3889 0.8558 6.0713 13 6 2.0399 -0.7214 -1.2493 14 7 1.2641 -0.2847 -2.4178 15 6 1.3892 1.1812 -2.6223 16 6 0.9896 1.3672 -4.1076 17 6 1.5985 0.1200 -4.7883 18 1 2.5639 0.3642 -5.2316 19 6 0.6448 -0.4216 -5.8552 20 1 -0.3292 -0.6425 -5.4187 21 6 0.5015 0.5881 -7.0159 22 6 1.0266 -0.1803 -8.2488 23 8 0.8591 -1.5751 -7.9134 24 6 1.2380 -1.6827 -6.5216 25 6 1.7751 -0.9098 -3.6570 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.0682 1.4642 -0.3615 30 1 1.4126 2.0497 -0.6524 31 1 2.0028 1.8410 1.0137 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.8535 -1.8881 4.7335 35 1 3.0925 -0.4829 -1.4023 36 1 1.9264 -1.7976 -1.1192 37 1 0.7036 1.7207 -1.9690 38 1 2.4163 1.5065 -2.4565 39 1 1.4265 2.2798 -4.5131 40 1 -0.0946 1.3773 -4.2198 41 1 -0.5438 0.8644 -7.1548 42 1 1.1080 1.4741 -6.8286 43 1 0.4384 0.0710 -9.1314 44 1 2.0796 0.0457 -8.4166 45 1 2.3236 -1.6886 -6.4238 46 1 0.8115 -2.5824 -6.0781 47 1 2.8305 -1.1563 -3.5407 48 1 1.2033 -1.8101 -3.8817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371315192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:45 Heat of formation + Delta-G solvation = -54.426510 kcal Electronic energy + Delta-G solvation = -23235.057735 eV Core-core repulsion = 20096.289420 eV Total energy + Delta-G solvation = -3138.768315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21504 -38.83022 -36.28810 -33.37787 -32.13292 -30.33849 -30.02260 -27.82361 -26.53855 -26.33325 -25.58441 -23.31254 -22.52723 -21.67527 -20.62076 -19.89612 -18.01971 -16.71445 -16.29360 -16.16493 -15.65610 -15.21151 -15.08622 -14.55845 -14.14754 -13.82352 -13.32423 -13.18046 -12.94158 -12.78594 -12.65295 -12.33684 -12.11660 -11.91371 -11.78330 -11.62654 -11.23657 -11.05340 -10.87977 -10.86275 -10.81896 -10.72497 -10.63409 -10.46660 -10.35460 -10.06563 -10.02616 -9.89571 -9.64593 -8.96209 -8.79367 -8.31195 -8.07568 -5.95674 -3.95529 3.32576 3.40506 3.43871 3.72357 4.23058 4.27559 4.43636 4.50067 4.58396 4.77286 4.80128 4.94719 5.06161 5.21048 5.35536 5.38608 5.40222 5.42537 5.49262 5.55352 5.61529 5.66776 5.68874 5.71623 5.76447 5.89390 5.93657 5.98059 6.05254 6.17777 6.22226 6.29128 6.39170 6.54216 6.54636 6.66092 6.74828 6.90663 7.13652 7.26701 7.28408 7.35527 7.47540 7.72371 7.87758 8.04770 8.49242 9.10013 9.67076 11.16064 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.003123 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.685198 B = 8962.325321 C = 9240.897674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.146 4.146 4 C 0.035 3.965 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.057 3.943 14 N -0.508 5.508 15 C 0.031 3.969 16 C -0.121 4.121 17 C -0.088 4.088 18 H 0.072 0.928 19 C -0.109 4.109 20 H 0.089 0.911 21 C -0.151 4.151 22 C 0.044 3.956 23 O -0.380 6.380 24 C 0.048 3.952 25 C 0.036 3.964 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.258 0.742 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.041 0.959 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 4.797 -21.493 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.070 4.070 14 N -0.231 5.231 15 C -0.097 4.097 16 C -0.159 4.159 17 C -0.107 4.107 18 H 0.090 0.910 19 C -0.128 4.128 20 H 0.107 0.893 21 C -0.188 4.188 22 C -0.033 4.033 23 O -0.298 6.298 24 C -0.029 4.029 25 C -0.092 4.092 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.059 0.941 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.795 4.347 -21.396 22.012 hybrid contribution 0.825 0.679 1.031 1.484 sum -1.970 5.026 -20.366 21.069 Atomic orbital electron populations 1.21611 0.94811 1.00807 0.99861 1.20602 0.95997 0.94863 0.94310 1.22293 0.98609 0.96810 1.02545 1.19121 0.95856 0.95176 0.90110 1.21271 1.30682 1.11823 0.90603 0.92219 1.25017 0.95437 0.95119 0.99055 1.69972 1.37410 1.23184 1.23168 0.86617 0.78613 0.79729 0.83527 1.19774 1.21152 1.21209 1.22525 0.93859 1.00226 0.90439 1.64862 1.51787 1.04625 1.01861 1.23640 1.00270 0.90430 0.95315 1.22627 1.01255 0.96511 0.95502 1.22061 0.98068 0.95771 0.94838 0.90976 1.22602 1.00205 0.94649 0.95319 0.89304 1.23003 1.02398 0.98956 0.94488 1.23403 1.00254 0.81636 0.97983 1.89146 1.88358 1.25611 1.26724 1.23591 0.99264 0.98717 0.81321 1.22956 0.98452 0.97767 0.90037 0.92928 0.93809 0.94019 0.94703 0.93576 0.91206 0.97012 0.96660 0.93227 0.95522 0.91175 0.88782 0.93731 0.91628 0.90777 0.90712 0.90349 0.89359 0.92504 0.92178 0.88922 0.94098 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 7.70 37.16 0.29 -1.91 16 2 C -0.06 -1.14 0.52 -154.51 -0.08 -1.22 16 3 C -0.15 -2.70 7.19 37.15 0.27 -2.43 16 4 C 0.03 0.88 3.98 -27.88 -0.11 0.77 16 5 C -0.51 -13.82 7.35 -34.44 -0.25 -14.08 16 6 H 0.06 1.59 5.88 -52.49 -0.31 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.00 4.15 -3.82 -0.02 0.98 16 14 N -0.51 -7.40 4.26 -230.45 -0.98 -8.38 16 15 C 0.03 0.40 4.20 -1.90 -0.01 0.39 16 16 C -0.12 -1.23 5.98 -24.87 -0.15 -1.38 16 17 C -0.09 -0.86 2.25 -89.26 -0.20 -1.06 16 18 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.11 -0.98 2.36 -89.05 -0.21 -1.19 16 20 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.15 -1.16 6.41 -25.16 -0.16 -1.32 16 22 C 0.04 0.36 7.64 37.93 0.29 0.65 16 23 O -0.38 -4.16 11.65 -35.23 -0.41 -4.57 16 24 C 0.05 0.45 6.37 37.94 0.24 0.69 16 25 C 0.04 0.44 6.02 -2.75 -0.02 0.42 16 26 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 27 H 0.04 0.75 5.74 -51.93 -0.30 0.45 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.62 7.41 -51.93 -0.39 0.23 16 30 H 0.05 0.74 4.78 -51.93 -0.25 0.49 16 31 H 0.07 1.45 6.24 -51.93 -0.32 1.13 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.47 7.61 -51.93 -0.40 0.07 16 36 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 37 H 0.09 1.30 4.68 -51.93 -0.24 1.06 16 38 H 0.04 0.61 7.05 -51.93 -0.37 0.24 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.54 7.47 -51.93 -0.39 0.15 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 46 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 47 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 48 H 0.08 0.89 7.22 -51.93 -0.37 0.52 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -29.71 349.47 -9.30 -39.00 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.67 Total: -2.48 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.22 Total: -19.26 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.25 Total: -34.55 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.41 Total: -4.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.71 -9.30 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371315192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.424 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds