Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.52996 * 109.47116 * 120.00358 * 2 1 3 5 5 C 1.50700 * 109.46984 * 299.99796 * 4 2 1 6 6 H 1.07998 * 120.00284 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99969 * 180.02562 * 5 4 2 8 8 N 1.31506 * 119.99622 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99965 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47314 * 89.99852 * 9 7 5 11 11 H 1.48494 * 109.46994 * 210.00281 * 9 7 5 12 12 H 1.48506 * 109.46922 * 330.00149 * 9 7 5 13 13 C 1.53007 * 109.47051 * 240.00102 * 2 1 3 14 14 N 1.46900 * 109.47141 * 186.29973 * 13 2 1 15 15 C 1.47844 * 110.99900 * 283.38233 * 14 13 2 16 16 C 1.54907 * 104.79696 * 213.63508 * 15 14 13 17 17 C 1.55141 * 101.65245 * 37.06898 * 16 15 14 18 18 H 1.09004 * 110.70543 * 82.73150 * 17 16 15 19 19 C 1.53000 * 110.70888 * 205.96566 * 17 16 15 20 20 H 1.08995 * 110.74864 * 52.89717 * 19 17 16 21 21 C 1.55305 * 110.84993 * 176.37283 * 19 17 16 22 22 C 1.55202 * 100.82766 * 152.17804 * 21 19 17 23 23 O 1.43641 * 105.26032 * 323.81748 * 22 21 19 24 24 C 1.43238 * 109.97267 * 24.28153 * 23 22 21 25 25 C 1.47442 * 111.00107 * 162.53904 * 14 13 2 26 26 H 1.09004 * 109.46880 * 306.56080 * 1 2 3 27 27 H 1.09004 * 109.47043 * 66.55962 * 1 2 3 28 28 H 1.08999 * 109.47405 * 186.55548 * 1 2 3 29 29 H 1.09005 * 109.47334 * 164.36975 * 3 2 1 30 30 H 1.09003 * 109.47641 * 284.36473 * 3 2 1 31 31 H 1.08998 * 109.47485 * 44.36586 * 3 2 1 32 32 H 1.08994 * 109.47345 * 59.99826 * 4 2 1 33 33 H 1.09005 * 109.47278 * 180.02562 * 4 2 1 34 34 H 0.97001 * 119.99633 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47256 * 306.29933 * 13 2 1 36 36 H 1.08998 * 109.47020 * 66.30121 * 13 2 1 37 37 H 1.08998 * 110.37891 * 332.46140 * 15 14 13 38 38 H 1.09002 * 110.37852 * 94.80760 * 15 14 13 39 39 H 1.09004 * 110.99577 * 278.98033 * 16 15 14 40 40 H 1.08999 * 110.99296 * 155.15884 * 16 15 14 41 41 H 1.09003 * 111.12513 * 270.24354 * 21 19 17 42 42 H 1.09001 * 111.12417 * 34.39930 * 21 19 17 43 43 H 1.09001 * 110.36589 * 204.79836 * 22 21 19 44 44 H 1.09002 * 110.21098 * 82.75057 * 22 21 19 45 45 H 1.08995 * 109.83471 * 238.77566 * 24 23 22 46 46 H 1.08999 * 109.90242 * 117.84624 * 24 23 22 47 47 H 1.08992 * 109.88604 * 242.66482 * 25 14 13 48 48 H 1.08998 * 109.88782 * 3.84975 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4796 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4818 3.7320 8 7 1.4324 0.1379 4.8057 9 14 2.9451 -2.0006 3.9033 10 1 4.3728 -1.5949 3.9480 11 1 2.5942 -2.7160 5.1563 12 1 2.7218 -2.8983 2.7415 13 6 2.0400 -0.7213 -1.2493 14 7 3.5011 -0.8543 -1.1758 15 6 4.1663 0.4277 -1.4917 16 6 5.4789 0.0258 -2.2096 17 6 5.0182 -1.1998 -3.0419 18 1 4.5499 -0.8796 -3.9726 19 6 6.1948 -2.1372 -3.3211 20 1 6.7053 -2.4024 -2.3954 21 6 5.7209 -3.4095 -4.0752 22 6 7.0106 -3.7849 -4.8527 23 8 7.6060 -2.5318 -5.2248 24 6 7.1773 -1.5008 -4.3276 25 6 3.9864 -1.8797 -2.1175 26 1 -0.3633 0.6122 0.8255 27 1 -0.3633 0.4088 -0.9429 28 1 -0.3634 -1.0209 0.1173 29 1 3.0942 1.4551 0.2769 30 1 1.9207 1.8701 -0.9955 31 1 1.4685 2.0299 0.7186 32 1 1.6766 -1.7489 1.2491 33 1 3.1300 -0.7209 1.2494 34 1 1.6667 -0.1935 5.6867 35 1 1.5875 -1.7112 -1.3075 36 1 1.7716 -0.1464 -2.1357 37 1 3.5406 1.0272 -2.1527 38 1 4.3873 0.9764 -0.5761 39 1 6.2468 -0.2574 -1.4898 40 1 5.8306 0.8282 -2.8582 41 1 5.4360 -4.1966 -3.3772 42 1 4.9042 -3.1793 -4.7594 43 1 6.7624 -4.3647 -5.7417 44 1 7.6868 -4.3491 -4.2104 45 1 6.6751 -0.7104 -4.8853 46 1 8.0362 -1.0902 -3.7966 47 1 4.4600 -2.6932 -1.5681 48 1 3.1549 -2.2633 -2.7088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371315194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = -56.148743 kcal Electronic energy + Delta-G solvation = -23453.774407 eV Core-core repulsion = 20314.931411 eV Total energy + Delta-G solvation = -3138.842996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16842 -38.83053 -36.37083 -33.33679 -32.13664 -30.78926 -29.37287 -28.27031 -27.58667 -26.35489 -25.01441 -22.79806 -22.34096 -21.91197 -20.62963 -20.11900 -17.98117 -16.89040 -16.69565 -16.38764 -15.53946 -15.23890 -14.72304 -14.40811 -14.00394 -13.73878 -13.46540 -13.35887 -13.07588 -12.84656 -12.49131 -12.36178 -12.28053 -12.09129 -11.95096 -11.71487 -11.49185 -11.17794 -11.04573 -10.90454 -10.88750 -10.73902 -10.68317 -10.62105 -10.24309 -10.10351 -9.78056 -9.67284 -9.58160 -9.18326 -8.77442 -8.39571 -7.90446 -5.90943 -3.85487 3.40983 3.47541 3.54808 3.62670 4.09344 4.22382 4.36102 4.56591 4.58508 4.73740 4.88036 4.94772 5.00160 5.15498 5.30202 5.38416 5.40880 5.43983 5.49557 5.51589 5.56036 5.59193 5.62817 5.66641 5.75232 5.86864 5.89606 5.96158 6.03085 6.03265 6.22313 6.25713 6.26465 6.36777 6.42954 6.72303 6.72739 6.77890 7.03877 7.16803 7.21770 7.31914 7.47024 7.55846 7.74910 7.98700 8.70372 9.16068 9.74002 11.22629 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.004147 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.716051 B = 6750.907502 C = 7330.956019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.048 4.048 3 C -0.129 4.129 4 C 0.009 3.991 5 C -0.507 4.507 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.911 5.911 9 Si 0.877 3.123 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.265 1.265 13 C 0.063 3.937 14 N -0.517 5.517 15 C 0.042 3.958 16 C -0.129 4.129 17 C -0.098 4.098 18 H 0.075 0.925 19 C -0.110 4.110 20 H 0.089 0.911 21 C -0.152 4.152 22 C 0.050 3.950 23 O -0.388 6.388 24 C 0.056 3.944 25 C 0.049 3.951 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.056 0.944 32 H 0.007 0.993 33 H 0.028 0.972 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 -4.375 -19.466 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.049 4.049 3 C -0.186 4.186 4 C -0.029 4.029 5 C -0.545 4.545 6 H 0.091 0.909 7 C -0.137 4.137 8 N -0.551 5.551 9 Si 0.705 3.295 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.190 1.190 13 C -0.065 4.065 14 N -0.240 5.240 15 C -0.085 4.085 16 C -0.167 4.167 17 C -0.118 4.118 18 H 0.093 0.907 19 C -0.129 4.129 20 H 0.107 0.893 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.308 6.308 24 C -0.020 4.020 25 C -0.079 4.079 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.833 -4.505 -18.935 21.374 hybrid contribution 0.126 -0.635 -0.316 0.720 sum 8.959 -5.140 -19.251 21.847 Atomic orbital electron populations 1.21739 0.95413 1.01368 0.99918 1.20396 0.94362 0.95191 0.94926 1.21982 1.01857 0.96099 0.98635 1.19503 0.96825 0.94701 0.91824 1.21288 1.31090 1.12945 0.89178 0.90946 1.25002 0.95927 0.96702 0.96029 1.69923 1.46627 1.40812 0.97762 0.86813 0.81168 0.84308 0.77177 1.20561 1.21992 1.18990 1.22521 0.86786 0.99918 0.97276 1.63515 1.06152 1.05560 1.48820 1.23343 0.93467 0.92033 0.99677 1.22863 0.98481 0.96761 0.98564 1.22383 0.95155 0.95448 0.98796 0.90658 1.22731 0.95986 0.94964 0.99192 0.89261 1.23373 0.98165 0.97907 0.99512 1.23410 0.93263 0.86776 0.99174 1.88385 1.70860 1.17691 1.53847 1.23194 0.97175 0.90798 0.90861 1.22881 0.96564 0.95880 0.92569 0.91435 0.95247 0.93588 0.92206 0.95587 0.92482 0.97492 0.95383 0.93101 0.91782 0.95769 0.93740 0.89129 0.90548 0.91189 0.89619 0.90352 0.89913 0.92229 0.91285 0.91425 0.90751 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.07 37.16 0.30 -2.06 16 2 C -0.05 -0.93 0.61 -154.51 -0.09 -1.02 16 3 C -0.13 -2.38 6.70 37.16 0.25 -2.13 16 4 C 0.01 0.21 2.82 -27.89 -0.08 0.13 16 5 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 6 H 0.07 2.16 6.07 -52.49 -0.32 1.84 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 9 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 C 0.06 1.02 3.88 -3.82 -0.01 1.00 16 14 N -0.52 -7.98 4.08 -231.25 -0.94 -8.93 16 15 C 0.04 0.57 4.96 -2.30 -0.01 0.56 16 16 C -0.13 -1.39 6.27 -24.59 -0.15 -1.55 16 17 C -0.10 -0.99 2.31 -88.80 -0.20 -1.20 16 18 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 19 C -0.11 -0.99 2.33 -88.67 -0.21 -1.20 16 20 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 21 C -0.15 -1.24 6.15 -24.34 -0.15 -1.39 16 22 C 0.05 0.43 7.78 38.32 0.30 0.72 16 23 O -0.39 -4.28 11.36 -35.23 -0.40 -4.68 16 24 C 0.06 0.53 7.15 37.88 0.27 0.80 16 25 C 0.05 0.61 5.95 -2.84 -0.02 0.59 16 26 H 0.07 1.40 6.74 -51.93 -0.35 1.05 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.12 5.37 -51.93 -0.28 0.84 16 30 H 0.03 0.41 7.33 -51.93 -0.38 0.03 16 31 H 0.06 1.16 7.03 -51.93 -0.37 0.79 16 32 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 33 H 0.03 0.69 6.87 -51.93 -0.36 0.33 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.06 1.03 7.80 -51.93 -0.41 0.63 16 36 H 0.02 0.36 7.52 -51.93 -0.39 -0.03 16 37 H 0.04 0.59 6.78 -51.93 -0.35 0.24 16 38 H 0.09 1.37 5.98 -51.93 -0.31 1.06 16 39 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 48 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -30.99 351.79 -9.02 -40.01 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.88 Total: -2.41 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.20 Total: -19.42 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.17 Total: -36.50 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.40 Total: -4.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.99 -9.02 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371315194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.142 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds