Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47502 * 239.99930 * 2 1 3 5 5 C 1.50704 * 109.47070 * 60.00097 * 4 2 1 6 6 H 1.08000 * 120.00108 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00290 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99887 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47297 * 59.99627 * 9 7 5 11 11 H 1.48499 * 109.47147 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47069 * 299.99789 * 9 7 5 13 13 C 1.53004 * 109.47131 * 119.99456 * 2 1 3 14 14 N 1.46894 * 109.47223 * 306.23544 * 13 2 1 15 15 C 1.47907 * 111.00060 * 169.19644 * 14 13 2 16 16 C 1.55025 * 104.87988 * 146.22027 * 15 14 13 17 17 C 1.54759 * 101.69939 * 323.74083 * 16 15 14 18 18 C 1.47610 * 111.00368 * 290.00954 * 14 13 2 19 19 C 1.52358 * 110.45252 * 153.32012 * 17 16 15 20 20 C 1.53243 * 109.22522 * 177.62204 * 19 17 16 21 21 O 1.42920 * 109.31842 * 303.62462 * 20 19 17 22 22 C 1.42914 * 114.22752 * 61.75820 * 21 20 19 23 23 C 1.52350 * 110.25486 * 276.14075 * 17 16 15 24 24 H 1.08997 * 109.47246 * 304.81998 * 1 2 3 25 25 H 1.09006 * 109.46730 * 64.81758 * 1 2 3 26 26 H 1.09004 * 109.46924 * 184.81730 * 1 2 3 27 27 H 1.09012 * 109.46668 * 169.85259 * 3 2 1 28 28 H 1.08999 * 109.47018 * 289.84691 * 3 2 1 29 29 H 1.08991 * 109.47358 * 49.85372 * 3 2 1 30 30 H 1.09000 * 109.47097 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.46834 * 300.00167 * 4 2 1 32 32 H 0.97000 * 119.99932 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46839 * 186.23407 * 13 2 1 34 34 H 1.09003 * 109.46845 * 66.23890 * 13 2 1 35 35 H 1.09003 * 110.36111 * 265.07527 * 15 14 13 36 36 H 1.09006 * 110.35684 * 27.36767 * 15 14 13 37 37 H 1.08994 * 111.00270 * 81.71061 * 16 15 14 38 38 H 1.09006 * 111.00263 * 205.56365 * 16 15 14 39 39 H 1.09000 * 109.91221 * 355.62050 * 18 14 13 40 40 H 1.08992 * 109.92170 * 116.72565 * 18 14 13 41 41 H 1.08993 * 109.51680 * 297.54875 * 19 17 16 42 42 H 1.09000 * 109.50994 * 57.70180 * 19 17 16 43 43 H 1.09004 * 109.50072 * 183.66964 * 20 19 17 44 44 H 1.09004 * 109.52040 * 63.59345 * 20 19 17 45 45 H 1.09000 * 109.49689 * 178.29752 * 22 21 20 46 46 H 1.08997 * 109.52365 * 58.21517 * 22 21 20 47 47 H 1.09002 * 109.50968 * 302.18360 * 23 17 16 48 48 H 1.08994 * 109.51127 * 62.33693 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3807 7 6 1.8705 -0.4822 -3.7319 8 7 2.6267 -1.5515 -3.8526 9 14 1.2473 0.3980 -5.2572 10 1 1.7422 1.7981 -5.2577 11 1 1.7425 -0.3020 -6.4696 12 1 -0.2376 0.3978 -5.2567 13 6 2.0400 -0.7211 1.2493 14 7 1.4314 -0.1209 2.4440 15 6 1.6932 -0.9456 3.6435 16 6 1.8267 0.0723 4.8051 17 6 2.5393 1.2548 4.1057 18 6 1.9611 1.2361 2.6825 19 6 2.2060 2.5664 4.8057 20 6 2.9714 3.7084 4.1287 21 8 4.3702 3.4159 4.1466 22 6 4.7308 2.2309 3.4336 23 6 4.0447 1.0223 4.0793 24 1 -0.3633 0.5868 0.8436 25 1 -0.3633 0.4373 -0.9301 26 1 -0.3633 -1.0241 0.0863 27 1 3.1149 1.4479 0.1811 28 1 1.8320 1.9014 -0.9666 29 1 1.5364 2.0060 0.7855 30 1 3.1301 -0.7208 -1.2493 31 1 1.6767 -1.7489 -1.2491 32 1 2.8604 -1.8833 -4.7336 33 1 3.1242 -0.6255 1.3068 34 1 1.7707 -1.7760 1.1953 35 1 0.8595 -1.6234 3.8271 36 1 2.6197 -1.5071 3.5229 37 1 0.8468 0.3737 5.1750 38 1 2.4393 -0.3324 5.6108 39 1 2.7457 1.4607 1.9600 40 1 1.1582 1.9683 2.5983 41 1 1.1347 2.7545 4.7358 42 1 2.4978 2.5039 5.8541 43 1 2.7873 4.6387 4.6661 44 1 2.6344 3.8114 3.0972 45 1 5.8121 2.0985 3.4714 46 1 4.4111 2.3190 2.3953 47 1 4.4116 0.8967 5.0980 48 1 4.2645 0.1261 3.4993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374268714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -55.220230 kcal Electronic energy + Delta-G solvation = -24204.944633 eV Core-core repulsion = 21066.141900 eV Total energy + Delta-G solvation = -3138.802733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71921 -38.18130 -36.22411 -33.24466 -32.13068 -31.30054 -29.73888 -27.75461 -26.80324 -26.06313 -25.23031 -23.79701 -23.01367 -22.12104 -20.79672 -18.75934 -17.92447 -16.41754 -16.17931 -16.12841 -15.74278 -15.28892 -14.74060 -14.44782 -14.07015 -13.83048 -13.66664 -13.30173 -12.83712 -12.67944 -12.50789 -12.39008 -12.09496 -11.98514 -11.68235 -11.55236 -11.34441 -11.28333 -11.00318 -10.83393 -10.76845 -10.65022 -10.48737 -10.36346 -10.28840 -10.13407 -9.92879 -9.59778 -9.47301 -8.97689 -8.80307 -8.30455 -7.94063 -5.95297 -3.95286 3.35212 3.39874 3.42120 3.77668 4.23000 4.38703 4.47530 4.50055 4.69403 4.88062 5.03368 5.09705 5.14306 5.28231 5.34597 5.40497 5.45801 5.55173 5.57636 5.63144 5.67936 5.71469 5.78803 5.81146 5.85122 5.92889 5.99923 6.06208 6.11816 6.20037 6.26447 6.30278 6.36224 6.52336 6.70563 6.77698 6.87691 7.09160 7.19690 7.23692 7.27490 7.36690 7.51532 7.71695 7.86881 8.04871 8.49458 9.09651 9.67263 11.16337 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.004394 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.874124 B = 6370.741380 C = 6813.826580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.139 4.139 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.520 5.520 15 C 0.041 3.959 16 C -0.117 4.117 17 C -0.086 4.086 18 C 0.042 3.958 19 C -0.136 4.136 20 C 0.058 3.942 21 O -0.384 6.384 22 C 0.058 3.942 23 C -0.139 4.139 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 6.035 18.448 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.244 5.244 15 C -0.087 4.087 16 C -0.155 4.155 17 C -0.087 4.087 18 C -0.085 4.085 19 C -0.174 4.174 20 C -0.018 4.018 21 O -0.303 6.303 22 C -0.018 4.018 23 C -0.177 4.177 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.190 6.044 18.299 19.272 hybrid contribution 0.419 -0.017 -0.971 1.058 sum 0.609 6.027 17.328 18.356 Atomic orbital electron populations 1.21564 0.94928 1.00299 1.00214 1.20570 0.95933 0.94849 0.94100 1.22199 0.98506 0.97146 1.01749 1.19105 0.95822 0.95191 0.90202 1.21194 1.30786 1.11894 0.90608 0.92333 1.25007 0.95397 0.95114 0.99008 1.69958 1.37266 1.23182 1.23372 0.86734 0.79219 0.79775 0.82729 1.20373 1.21442 1.20305 1.22472 0.95407 0.98654 0.90079 1.63665 1.56633 1.01504 1.02564 1.23041 0.99897 0.95940 0.89795 1.22740 1.00471 0.95033 0.97239 1.21418 0.94971 0.95346 0.96921 1.23393 0.98760 0.92336 0.94006 1.22033 1.00824 0.94476 1.00045 1.22636 0.81365 0.97500 1.00337 1.87890 1.23798 1.43502 1.75136 1.22655 0.99740 0.84261 0.95184 1.22065 0.94707 0.98994 1.01931 0.94013 0.92656 0.94352 0.94578 0.91666 0.93657 0.97038 0.96733 0.93127 0.95542 0.91467 0.90628 0.94007 0.90772 0.91305 0.90653 0.90830 0.90591 0.91288 0.89095 0.92788 0.88965 0.92626 0.91190 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 7.98 37.16 0.30 -1.91 16 2 C -0.05 -1.08 0.60 -154.51 -0.09 -1.17 16 3 C -0.14 -2.60 6.77 37.16 0.25 -2.34 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.84 7.45 -34.44 -0.26 -14.10 16 6 H 0.06 1.56 5.75 -52.49 -0.30 1.26 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.07 3.85 -3.82 -0.01 1.05 16 14 N -0.52 -7.63 4.23 -231.43 -0.98 -8.61 16 15 C 0.04 0.51 6.40 -2.20 -0.01 0.49 16 16 C -0.12 -1.21 6.00 -24.73 -0.15 -1.36 16 17 C -0.09 -0.93 0.54 -153.92 -0.08 -1.01 16 18 C 0.04 0.56 3.14 -3.11 -0.01 0.55 16 19 C -0.14 -1.31 4.79 -26.93 -0.13 -1.44 16 20 C 0.06 0.60 6.67 37.28 0.25 0.84 16 21 O -0.38 -4.69 10.75 -35.23 -0.38 -5.07 16 22 C 0.06 0.66 6.66 37.28 0.25 0.91 16 23 C -0.14 -1.51 4.75 -26.94 -0.13 -1.63 16 24 H 0.04 0.74 7.59 -51.93 -0.39 0.35 16 25 H 0.05 1.17 6.48 -51.93 -0.34 0.83 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.65 7.25 -51.92 -0.38 0.27 16 28 H 0.06 1.35 6.35 -51.93 -0.33 1.02 16 29 H 0.04 0.74 5.13 -51.93 -0.27 0.47 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.03 0.46 7.90 -51.93 -0.41 0.05 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.52 7.55 -51.93 -0.39 0.13 16 37 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 38 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 39 H 0.08 1.08 2.87 -51.93 -0.15 0.94 16 40 H 0.07 1.00 6.99 -51.93 -0.36 0.63 16 41 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.67 6.67 -51.93 -0.35 0.33 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -29.34 345.62 -9.12 -38.46 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.65 Total: -1.56 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.24 Total: -34.73 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.34 -9.12 -38.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374268714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.762 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds