Wall clock time and date at job start Tue Mar 31 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46807 * 2 1 4 4 C 1.52995 * 109.47137 * 120.00514 * 2 1 3 5 5 C 1.50701 * 109.47012 * 299.99887 * 4 2 1 6 6 H 1.08005 * 119.99729 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99809 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47305 * 90.00118 * 9 7 5 11 11 H 1.48497 * 109.46691 * 210.00092 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99838 * 9 7 5 13 13 C 1.53000 * 109.46847 * 240.00456 * 2 1 3 14 14 N 1.46903 * 109.47204 * 65.59813 * 13 2 1 15 15 C 1.48555 * 111.00052 * 277.43801 * 14 13 2 16 16 C 1.54377 * 104.59703 * 200.95874 * 15 14 13 17 17 C 1.54259 * 105.05911 * 23.85661 * 16 15 14 18 18 C 1.48565 * 110.99796 * 162.02245 * 14 13 2 19 19 H 1.09000 * 110.40897 * 40.26409 * 18 14 13 20 20 C 1.53004 * 110.41062 * 277.81835 * 18 14 13 21 21 H 1.08999 * 110.32707 * 68.06367 * 20 18 14 22 22 C 1.54473 * 110.37391 * 305.80997 * 20 18 14 23 23 C 1.54509 * 104.06270 * 217.19254 * 22 20 18 24 24 C 1.54478 * 104.06455 * 359.97438 * 23 22 20 25 25 O 1.44427 * 110.36957 * 190.42818 * 20 18 14 26 26 H 1.08992 * 109.46865 * 287.24764 * 1 2 3 27 27 H 1.08997 * 109.46773 * 47.25095 * 1 2 3 28 28 H 1.09004 * 109.46801 * 167.25160 * 1 2 3 29 29 H 1.09001 * 109.47342 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47632 * 300.00022 * 3 2 1 31 31 H 1.09006 * 109.47441 * 60.00442 * 3 2 1 32 32 H 1.08994 * 109.47645 * 60.00137 * 4 2 1 33 33 H 1.09001 * 109.46560 * 180.02562 * 4 2 1 34 34 H 0.97001 * 120.00142 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.46832 * 185.59834 * 13 2 1 36 36 H 1.09000 * 109.47397 * 305.60010 * 13 2 1 37 37 H 1.08997 * 110.41474 * 319.74534 * 15 14 13 38 38 H 1.09007 * 110.40551 * 82.18670 * 15 14 13 39 39 H 1.09001 * 110.32883 * 264.96558 * 16 15 14 40 40 H 1.08992 * 110.40918 * 142.79550 * 16 15 14 41 41 H 1.09003 * 110.32658 * 241.10631 * 17 16 15 42 42 H 1.09003 * 110.41264 * 118.93757 * 17 16 15 43 43 H 1.09001 * 110.51501 * 335.83867 * 22 20 18 44 44 H 1.09000 * 110.51064 * 98.54769 * 22 20 18 45 45 H 1.09001 * 110.51286 * 118.64720 * 23 22 20 46 46 H 1.09003 * 110.50721 * 241.21931 * 23 22 20 47 47 H 1.08994 * 110.37293 * 142.81095 * 24 23 22 48 48 H 1.08996 * 110.37385 * 265.15091 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5377 -0.0110 2.4797 6 1 0.9172 0.8674 2.3806 7 6 1.8713 -0.4819 3.7319 8 7 2.6281 -1.5505 3.8525 9 14 1.2480 0.3983 5.2572 10 1 -0.0596 -0.1777 5.6614 11 1 2.2264 0.2281 6.3612 12 1 1.0819 1.8440 4.9613 13 6 2.0400 -0.7212 -1.2493 14 7 1.6637 0.0450 -2.4449 15 6 0.2669 -0.2551 -2.8518 16 6 0.1978 0.1560 -4.3382 17 6 1.6542 0.0857 -4.8416 18 6 2.4808 -0.3620 -3.6170 19 1 2.6195 -1.4431 -3.6266 20 6 3.8345 0.3509 -3.5973 21 1 4.4394 -0.0081 -2.7648 22 6 3.6358 1.8796 -3.4979 23 6 4.7547 2.4623 -4.3900 24 6 5.4974 1.2168 -4.9223 25 8 4.5270 0.1493 -4.8486 26 1 -0.3633 0.3047 0.9814 27 1 -0.3633 0.6976 -0.7546 28 1 -0.3633 -1.0024 -0.2268 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -1.7490 1.2491 33 1 3.1301 -0.7209 1.2493 34 1 2.8625 -1.8820 4.7334 35 1 3.1254 -0.8088 -1.2006 36 1 1.5971 -1.7158 -1.3010 37 1 0.0592 -1.3195 -2.7417 38 1 -0.4357 0.3333 -2.2616 39 1 -0.1867 1.1715 -4.4327 40 1 -0.4295 -0.5391 -4.8961 41 1 1.9846 1.0667 -5.1832 42 1 1.7436 -0.6444 -5.6461 43 1 2.6554 2.1631 -3.8809 44 1 3.7557 2.2141 -2.4675 45 1 4.3275 3.0339 -5.2140 46 1 5.4263 3.0869 -3.8010 47 1 5.8103 1.3740 -5.9545 48 1 6.3589 0.9914 -4.2939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375325334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:27 Heat of formation + Delta-G solvation = -54.956887 kcal Electronic energy + Delta-G solvation = -23998.316632 eV Core-core repulsion = 20859.525319 eV Total energy + Delta-G solvation = -3138.791314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10747 -38.38541 -36.09007 -32.52739 -32.00500 -31.04010 -30.61950 -27.14428 -26.71468 -26.13497 -25.36385 -23.19999 -22.55049 -21.57659 -20.60610 -19.38304 -17.91834 -16.72731 -16.19255 -16.05277 -15.33983 -15.22338 -14.75165 -14.39840 -14.12013 -13.80426 -13.61829 -13.25474 -12.78906 -12.47351 -12.30041 -12.16383 -11.89071 -11.66397 -11.54636 -11.35516 -11.15700 -11.11468 -11.08371 -10.83485 -10.72649 -10.65658 -10.51551 -10.33333 -10.25698 -10.14823 -9.97098 -9.66757 -9.59124 -8.95280 -8.82621 -8.30052 -8.12919 -5.94665 -3.94509 3.34047 3.40752 3.43569 3.65680 4.46588 4.54127 4.63130 4.65158 4.84440 4.91070 4.97613 5.11842 5.22707 5.30704 5.40238 5.41579 5.55175 5.63614 5.66303 5.69482 5.76978 5.82850 5.84852 5.91021 5.98816 6.02574 6.08052 6.11331 6.15836 6.19966 6.29108 6.40140 6.41694 6.61580 6.72311 6.81992 6.85524 6.90078 7.12666 7.26445 7.28119 7.34639 7.48310 7.73144 7.88451 8.05862 8.50563 9.10895 9.68095 11.17033 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.004395 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.191713 B = 6369.668894 C = 6969.077544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C -0.113 4.113 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.054 3.946 14 N -0.491 5.491 15 C 0.027 3.973 16 C -0.127 4.127 17 C -0.111 4.111 18 C 0.067 3.933 19 H 0.053 0.947 20 C 0.090 3.910 21 H 0.067 0.933 22 C -0.133 4.133 23 C -0.159 4.159 24 C 0.046 3.954 25 O -0.375 6.375 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.011 0.989 33 H 0.013 0.987 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 5.527 -18.339 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.051 4.051 3 C -0.171 4.171 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.074 4.074 14 N -0.216 5.216 15 C -0.100 4.100 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.042 4.042 19 H 0.071 0.929 20 C 0.032 3.968 21 H 0.085 0.915 22 C -0.171 4.171 23 C -0.197 4.197 24 C -0.031 4.031 25 O -0.293 6.293 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.538 5.801 -18.225 19.134 hybrid contribution -0.198 -0.487 1.031 1.157 sum 0.340 5.314 -17.195 18.000 Atomic orbital electron populations 1.22044 0.96118 0.99370 1.01594 1.20524 0.94806 0.95977 0.93754 1.21585 0.99371 0.95926 1.00181 1.19122 0.95981 0.95026 0.90282 1.21235 1.30665 1.11860 0.90587 0.92268 1.25009 0.95409 0.95131 0.99017 1.69965 1.37273 1.23303 1.23245 0.86680 0.78529 0.80144 0.83168 1.20838 1.21405 1.19912 1.22540 1.00046 0.94518 0.90308 1.65237 1.01734 1.52732 1.01914 1.23445 0.91924 0.99481 0.95155 1.22355 0.96717 1.01599 0.95856 1.22243 0.94098 1.01991 0.96576 1.22485 0.92491 0.97362 0.91885 0.92930 1.22769 0.92381 0.95308 0.86324 0.91485 1.22813 0.99137 0.94330 1.00792 1.22995 0.98461 0.98242 1.00028 1.23353 0.91970 0.86402 1.01361 1.89075 1.51240 1.49630 1.39404 0.91661 0.93846 0.94620 0.94561 0.93578 0.92895 0.97025 0.96827 0.93199 0.91700 0.94891 0.94092 0.88732 0.91374 0.91895 0.90810 0.91771 0.89932 0.90100 0.91157 0.90842 0.89542 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.13 37.16 0.27 -2.24 16 2 C -0.05 -0.99 0.61 -154.51 -0.09 -1.08 16 3 C -0.11 -2.15 7.96 37.15 0.30 -1.86 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.78 7.47 -34.44 -0.26 -14.03 16 6 H 0.06 1.57 5.76 -52.48 -0.30 1.27 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.05 0.93 3.99 -3.82 -0.02 0.91 16 14 N -0.49 -7.09 3.46 -222.13 -0.77 -7.86 16 15 C 0.03 0.36 5.31 -2.19 -0.01 0.35 16 16 C -0.13 -1.40 7.00 -25.35 -0.18 -1.57 16 17 C -0.11 -1.29 5.77 -25.35 -0.15 -1.44 16 18 C 0.07 0.89 2.34 -66.06 -0.15 0.74 16 19 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 20 C 0.09 1.19 3.17 -25.96 -0.08 1.11 16 21 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 22 C -0.13 -1.59 5.79 -25.17 -0.15 -1.73 16 23 C -0.16 -1.56 7.09 -25.16 -0.18 -1.74 16 24 C 0.05 0.47 7.63 37.93 0.29 0.76 16 25 O -0.37 -4.96 10.91 -35.23 -0.38 -5.34 16 26 H 0.06 1.35 6.30 -51.93 -0.33 1.02 16 27 H 0.04 0.71 5.47 -51.93 -0.28 0.42 16 28 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.79 7.46 -51.93 -0.39 0.40 16 31 H 0.05 1.09 6.62 -51.93 -0.34 0.74 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.06 1.16 7.19 -51.93 -0.37 0.79 16 36 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 37 H 0.04 0.56 7.65 -51.93 -0.40 0.16 16 38 H 0.09 1.27 5.26 -51.92 -0.27 1.00 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -29.04 352.22 -9.48 -38.52 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.73 Total: -1.40 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.62 Total: -19.64 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.03 Total: -34.02 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.04 -9.48 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375325334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.437 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds