Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47342 * 239.99799 * 2 1 3 5 5 C 1.50701 * 109.47351 * 59.99982 * 4 2 1 6 6 H 1.08005 * 119.99736 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99818 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00314 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99562 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47258 * 59.99926 * 9 7 5 11 11 H 1.48502 * 109.47120 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46941 * 299.99476 * 9 7 5 13 13 C 1.52998 * 109.46880 * 119.99602 * 2 1 3 14 14 N 1.46902 * 109.47368 * 288.68764 * 13 2 1 15 15 C 1.48530 * 111.00108 * 56.11712 * 14 13 2 16 16 C 1.54940 * 103.22869 * 159.72063 * 15 14 13 17 17 C 1.54597 * 102.92081 * 322.59320 * 16 15 14 18 18 C 1.47901 * 111.00477 * 173.51859 * 14 13 2 19 19 H 1.09004 * 109.91401 * 333.51312 * 18 14 13 20 20 C 1.53002 * 110.08137 * 94.70771 * 18 14 13 21 21 H 1.08995 * 110.33406 * 306.74733 * 20 18 14 22 22 C 1.54483 * 110.36853 * 184.49419 * 20 18 14 23 23 C 1.54511 * 104.05840 * 217.18963 * 22 20 18 24 24 C 1.54472 * 104.06749 * 0.02562 * 23 22 20 25 25 O 1.44425 * 110.36822 * 69.11605 * 20 18 14 26 26 H 1.08998 * 109.47039 * 330.30297 * 1 2 3 27 27 H 1.09008 * 109.46854 * 90.30211 * 1 2 3 28 28 H 1.09002 * 109.47171 * 210.29736 * 1 2 3 29 29 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46677 * 299.99726 * 3 2 1 31 31 H 1.08994 * 109.47297 * 59.99754 * 3 2 1 32 32 H 1.09001 * 109.47254 * 180.02562 * 4 2 1 33 33 H 1.09008 * 109.47049 * 300.00058 * 4 2 1 34 34 H 0.97004 * 120.00466 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47222 * 168.68656 * 13 2 1 36 36 H 1.08998 * 109.47548 * 48.68777 * 13 2 1 37 37 H 1.09007 * 110.66402 * 41.29220 * 15 14 13 38 38 H 1.08999 * 110.81298 * 278.22946 * 15 14 13 39 39 H 1.08993 * 110.72285 * 204.22600 * 16 15 14 40 40 H 1.08999 * 110.71648 * 80.94741 * 16 15 14 41 41 H 1.08997 * 110.30339 * 263.03892 * 17 16 15 42 42 H 1.09000 * 110.39022 * 140.91425 * 17 16 15 43 43 H 1.08998 * 110.51588 * 335.83730 * 22 20 18 44 44 H 1.09006 * 110.50791 * 98.55036 * 22 20 18 45 45 H 1.09001 * 110.50530 * 118.65025 * 23 22 20 46 46 H 1.08999 * 110.51184 * 241.35124 * 23 22 20 47 47 H 1.09002 * 110.37629 * 142.80757 * 24 23 22 48 48 H 1.08996 * 110.37596 * 265.03815 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3807 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2573 11 1 1.7434 -0.3016 -6.4696 12 1 -0.2366 0.3995 -5.2572 13 6 2.0399 -0.7212 1.2493 14 7 1.7848 0.1103 2.4332 15 6 0.3434 0.4516 2.5433 16 6 0.1830 0.8354 4.0358 17 6 1.1203 -0.1637 4.7523 18 6 2.1227 -0.6180 3.6753 19 1 2.0317 -1.6919 3.5125 20 6 3.5485 -0.2765 4.1131 21 1 4.2472 -0.4469 3.2941 22 6 3.9486 -1.1179 5.3453 23 6 4.7952 -0.1499 6.2019 24 6 4.8059 1.1618 5.3862 25 8 3.6217 1.0941 4.5625 26 1 -0.3633 0.8927 0.5091 27 1 -0.3633 -0.0054 -1.0277 28 1 -0.3633 -0.8873 0.5184 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 2.8610 -1.8831 -4.7334 35 1 3.1111 -0.8991 1.1543 36 1 1.5214 -1.6740 1.3560 37 1 -0.2760 -0.4115 2.2993 38 1 0.0951 1.2959 1.9001 39 1 -0.8483 0.6978 4.3607 40 1 0.5090 1.8612 4.2074 41 1 0.5516 -1.0163 5.1235 42 1 1.6432 0.3277 5.5728 43 1 3.0625 -1.4377 5.8936 44 1 4.5434 -1.9798 5.0425 45 1 4.3276 0.0087 7.1736 46 1 5.8084 -0.5333 6.3226 47 1 4.7565 2.0233 6.0522 48 1 5.6995 1.2147 4.7643 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375325335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = -47.608383 kcal Electronic energy + Delta-G solvation = -23873.603780 eV Core-core repulsion = 20735.131121 eV Total energy + Delta-G solvation = -3138.472659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10332 -38.52500 -35.94065 -32.53755 -32.10529 -31.02931 -30.50363 -27.45493 -26.56831 -26.09320 -25.42207 -23.09007 -22.48078 -21.43739 -20.54284 -19.62341 -17.94627 -16.66668 -16.14462 -16.01786 -15.61546 -14.81421 -14.74628 -14.44069 -14.19220 -13.71678 -13.37212 -13.18785 -12.89619 -12.66696 -12.48318 -12.02279 -11.85581 -11.80539 -11.61598 -11.21653 -11.19011 -10.98325 -10.92585 -10.84204 -10.79674 -10.71485 -10.57402 -10.31470 -10.29675 -10.02529 -9.83849 -9.62482 -9.57666 -8.92652 -8.77964 -8.28015 -7.95406 -5.92960 -3.92702 3.37133 3.41522 3.44056 3.90989 4.17850 4.50889 4.52412 4.72030 4.80098 4.86874 4.96741 5.15182 5.20693 5.26061 5.42731 5.45861 5.53718 5.60442 5.60945 5.70352 5.73565 5.75115 5.85279 5.87369 5.89195 5.96006 6.00583 6.08751 6.17649 6.24668 6.37140 6.38646 6.47832 6.60216 6.72507 6.80384 6.93457 6.96742 7.22153 7.31419 7.37128 7.42473 7.56877 7.75180 7.90994 8.07318 8.52266 9.12385 9.69617 11.18702 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.004023 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.165285 B = 6958.322212 C = 7395.645454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.114 4.114 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.498 5.498 15 C 0.031 3.969 16 C -0.124 4.124 17 C -0.120 4.120 18 C 0.069 3.931 19 H 0.059 0.941 20 C 0.094 3.906 21 H 0.069 0.931 22 C -0.153 4.153 23 C -0.154 4.154 24 C 0.040 3.960 25 O -0.349 6.349 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 1.959 20.652 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.171 4.171 4 C -0.002 4.002 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.070 4.070 14 N -0.221 5.221 15 C -0.096 4.096 16 C -0.162 4.162 17 C -0.158 4.158 18 C -0.040 4.040 19 H 0.077 0.923 20 C 0.036 3.964 21 H 0.087 0.913 22 C -0.192 4.192 23 C -0.192 4.192 24 C -0.037 4.037 25 O -0.268 6.268 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.659 2.474 20.391 20.551 hybrid contribution -0.431 -0.712 -0.853 1.192 sum 0.228 1.762 19.538 19.618 Atomic orbital electron populations 1.22378 0.96171 0.99080 1.02596 1.20599 0.94597 0.96286 0.94235 1.21629 1.00003 0.95540 0.99968 1.19118 0.96035 0.94929 0.90077 1.21199 1.30756 1.11876 0.90618 0.92323 1.25003 0.95428 0.95101 0.98999 1.69954 1.37282 1.23219 1.23347 0.86734 0.79131 0.79865 0.82718 1.20307 1.21469 1.20371 1.22528 1.00618 0.93535 0.90366 1.64685 1.17418 1.39476 1.00561 1.23726 0.89207 1.00871 0.95802 1.22509 0.98286 0.99903 0.95529 1.22315 0.96618 0.98679 0.98165 1.22416 0.93614 0.96325 0.91630 0.92282 1.22890 0.96736 0.81765 0.95028 0.91316 1.23026 1.00391 0.98839 0.96920 1.22918 1.00571 0.96092 0.99595 1.23361 0.89616 0.97652 0.93066 1.89242 1.43288 1.27275 1.66983 0.93461 0.91180 0.94660 0.94124 0.92927 0.93653 0.96737 0.97025 0.93147 0.91417 0.95602 0.93596 0.88776 0.91926 0.90888 0.92431 0.90501 0.90618 0.90721 0.91004 0.90883 0.89563 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.17 37.16 0.27 -2.50 16 2 C -0.06 -1.16 0.53 -154.51 -0.08 -1.25 16 3 C -0.11 -2.31 7.70 37.16 0.29 -2.02 16 4 C 0.04 0.92 4.01 -27.88 -0.11 0.81 16 5 C -0.51 -14.00 7.23 -34.44 -0.25 -14.25 16 6 H 0.06 1.58 6.04 -52.48 -0.32 1.26 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.07 13.28 55.43 0.74 -26.34 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.03 4.12 -3.82 -0.02 1.02 16 14 N -0.50 -7.86 4.03 -222.58 -0.90 -8.76 16 15 C 0.03 0.45 4.25 -1.90 -0.01 0.44 16 16 C -0.12 -1.53 7.06 -24.87 -0.18 -1.70 16 17 C -0.12 -1.41 5.46 -25.38 -0.14 -1.54 16 18 C 0.07 0.93 2.35 -66.65 -0.16 0.77 16 19 H 0.06 0.78 7.63 -51.93 -0.40 0.39 16 20 C 0.09 1.20 3.22 -25.95 -0.08 1.11 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 22 C -0.15 -1.48 6.32 -25.16 -0.16 -1.64 16 23 C -0.15 -1.30 7.09 -25.17 -0.18 -1.48 16 24 C 0.04 0.41 7.63 37.93 0.29 0.70 16 25 O -0.35 -4.80 10.19 -35.23 -0.36 -5.16 16 26 H 0.05 0.80 5.09 -51.93 -0.26 0.54 16 27 H 0.07 1.50 6.29 -51.92 -0.33 1.18 16 28 H 0.03 0.63 6.36 -51.93 -0.33 0.30 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 31 H 0.04 0.84 5.96 -51.93 -0.31 0.53 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.32 8.14 -51.92 -0.42 -0.11 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.03 0.47 7.60 -51.93 -0.39 0.07 16 37 H 0.05 0.68 6.29 -51.93 -0.33 0.35 16 38 H 0.09 1.44 4.59 -51.93 -0.24 1.20 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.90 6.69 -51.93 -0.35 0.55 16 43 H 0.08 0.69 7.08 -51.93 -0.37 0.32 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -29.98 348.32 -9.50 -39.48 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.59 Total: -1.19 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.61 Total: -20.06 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.16 Total: -35.10 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.36 Total: -5.16 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.98 -9.50 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375325335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.131 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds