Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53001 * 109.47280 * 240.00035 * 2 1 3 5 5 C 1.50699 * 109.47247 * 59.99891 * 4 2 1 6 6 H 1.08005 * 119.99654 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00313 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00047 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99812 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47505 * 89.99850 * 9 7 5 11 11 H 1.48508 * 109.47222 * 209.99851 * 9 7 5 12 12 H 1.48496 * 109.47052 * 329.99768 * 9 7 5 13 13 C 1.52997 * 109.47106 * 119.99769 * 2 1 3 14 14 N 1.46905 * 109.47285 * 173.92801 * 13 2 1 15 15 C 1.47846 * 110.99862 * 74.73351 * 14 13 2 16 16 C 1.54909 * 104.79454 * 146.36574 * 15 14 13 17 17 C 1.55148 * 101.65185 * 322.93415 * 16 15 14 18 18 C 1.47438 * 111.00250 * 195.58109 * 14 13 2 19 19 H 1.09001 * 109.89172 * 117.17377 * 18 14 13 20 20 C 1.53002 * 109.88719 * 356.15050 * 18 14 13 21 21 H 1.08997 * 109.82818 * 57.34696 * 20 18 14 22 22 C 1.54387 * 109.82840 * 178.33017 * 20 18 14 23 23 C 1.55312 * 102.25237 * 140.86555 * 22 20 18 24 24 C 1.54943 * 100.94030 * 325.86649 * 23 22 20 25 25 O 1.43240 * 109.82824 * 296.45854 * 20 18 14 26 26 H 1.08998 * 109.46893 * 292.28806 * 1 2 3 27 27 H 1.09007 * 109.47014 * 52.28244 * 1 2 3 28 28 H 1.09000 * 109.47398 * 172.28353 * 1 2 3 29 29 H 1.09001 * 109.47465 * 197.90056 * 3 2 1 30 30 H 1.09005 * 109.47198 * 317.89679 * 3 2 1 31 31 H 1.08996 * 109.47503 * 77.89450 * 3 2 1 32 32 H 1.08992 * 109.47544 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.46700 * 300.00237 * 4 2 1 34 34 H 0.97001 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46960 * 53.93190 * 13 2 1 36 36 H 1.08999 * 109.47260 * 293.93045 * 13 2 1 37 37 H 1.08999 * 110.37470 * 265.19781 * 15 14 13 38 38 H 1.09001 * 110.37266 * 27.43112 * 15 14 13 39 39 H 1.08999 * 110.99065 * 81.02183 * 16 15 14 40 40 H 1.09002 * 110.98914 * 204.80627 * 16 15 14 41 41 H 1.09004 * 110.70461 * 277.26860 * 17 16 15 42 42 H 1.08996 * 110.70486 * 154.03901 * 17 16 15 43 43 H 1.08994 * 110.84627 * 259.05473 * 22 20 18 44 44 H 1.08997 * 110.85143 * 22.47271 * 22 20 18 45 45 H 1.09000 * 111.11950 * 83.78350 * 23 22 20 46 46 H 1.08996 * 111.12318 * 207.90019 * 23 22 20 47 47 H 1.08994 * 110.30922 * 277.52440 * 24 23 22 48 48 H 1.09002 * 110.30751 * 155.35728 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 1.4323 0.1381 -4.8058 9 14 2.9431 -2.0017 -3.9033 10 1 2.0837 -3.2120 -3.9486 11 1 3.7351 -1.9099 -5.1562 12 1 3.8635 -2.0915 -2.7414 13 6 2.0400 -0.7212 1.2492 14 7 3.5017 -0.8494 1.1783 15 6 4.1610 0.4451 1.4531 16 6 5.4762 0.0723 2.1818 17 6 5.0223 -1.1289 3.0526 18 6 3.9929 -1.8424 2.1511 19 1 4.4675 -2.6719 1.6269 20 6 2.8292 -2.3603 2.9988 21 1 2.0623 -2.7872 2.3526 22 6 3.3379 -3.4304 3.9885 23 6 2.5249 -3.1059 5.2715 24 6 2.4204 -1.5633 5.1710 25 8 2.2739 -1.2877 3.7689 26 1 -0.3633 0.3898 0.9509 27 1 -0.3633 0.6287 -0.8130 28 1 -0.3634 -1.0183 -0.1380 29 1 3.0831 1.4591 -0.3159 30 1 1.4423 2.0392 -0.6890 31 1 1.9580 1.8569 1.0048 32 1 3.1299 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2492 34 1 1.6661 -0.1937 -5.6868 35 1 1.5906 -1.7127 1.3052 36 1 1.7681 -0.1484 2.1359 37 1 4.3783 0.9658 0.5205 38 1 3.5320 1.0628 2.0941 39 1 6.2447 -0.2296 1.4703 40 1 5.8250 0.8966 2.8039 41 1 4.5533 -0.7819 3.9733 42 1 5.8639 -1.7860 3.2714 43 1 3.1088 -4.4330 3.6274 44 1 4.4077 -3.3186 4.1648 45 1 1.5389 -3.5694 5.2393 46 1 3.0684 -3.4061 6.1673 47 1 3.3274 -1.0968 5.5556 48 1 1.5487 -1.2066 5.7197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375325336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = -40.872945 kcal Electronic energy + Delta-G solvation = -24563.700666 eV Core-core repulsion = 21425.520078 eV Total energy + Delta-G solvation = -3138.180588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59539 -38.15356 -35.97817 -32.46294 -32.16967 -31.33974 -30.32499 -27.66129 -27.21379 -26.12784 -24.99281 -22.69202 -22.34591 -21.88052 -20.73140 -19.41454 -17.76996 -17.02829 -16.58724 -15.89572 -15.63464 -15.39920 -14.62205 -14.08298 -13.97579 -13.56517 -13.39557 -13.14800 -12.88201 -12.72081 -12.30280 -12.18431 -12.05094 -11.79494 -11.67278 -11.44843 -11.28033 -11.16637 -11.08543 -10.91420 -10.81578 -10.76799 -10.64429 -10.41346 -10.20409 -9.92093 -9.63621 -9.50166 -9.36520 -9.03107 -8.67161 -8.33500 -7.68663 -5.85002 -3.78942 3.44484 3.51474 3.61392 3.70534 4.26751 4.39639 4.57347 4.64235 4.69780 4.83950 4.89420 4.98522 5.12519 5.22648 5.44780 5.46848 5.50284 5.53028 5.57315 5.65384 5.69139 5.74040 5.80054 5.88524 5.89516 5.94018 6.02800 6.10434 6.16508 6.32371 6.39054 6.40848 6.49678 6.52732 6.61754 6.84847 6.89425 6.98686 7.15787 7.27610 7.34538 7.49199 7.62347 7.65997 7.87359 8.06121 8.77687 9.22713 9.80325 11.28666 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.005299 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.086245 B = 5282.493498 C = 5393.343876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.128 4.128 4 C 0.008 3.992 5 C -0.504 4.504 6 H 0.072 0.928 7 C 0.062 3.938 8 N -0.912 5.912 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.260 1.260 13 C 0.059 3.941 14 N -0.509 5.509 15 C 0.045 3.955 16 C -0.132 4.132 17 C -0.134 4.134 18 C 0.062 3.938 19 H 0.088 0.912 20 C 0.062 3.938 21 H 0.091 0.909 22 C -0.150 4.150 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.364 6.364 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.001 0.999 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -5.031 21.752 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.050 4.050 3 C -0.185 4.185 4 C -0.030 4.030 5 C -0.542 4.542 6 H 0.090 0.910 7 C -0.137 4.137 8 N -0.553 5.553 9 Si 0.701 3.299 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.184 1.184 13 C -0.068 4.068 14 N -0.231 5.231 15 C -0.082 4.082 16 C -0.170 4.170 17 C -0.172 4.172 18 C -0.047 4.047 19 H 0.106 0.894 20 C 0.003 3.997 21 H 0.109 0.891 22 C -0.188 4.188 23 C -0.192 4.192 24 C -0.031 4.031 25 O -0.283 6.283 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.717 -5.013 20.959 22.296 hybrid contribution 0.392 -0.858 0.615 1.126 sum 6.109 -5.872 21.574 23.178 Atomic orbital electron populations 1.21718 0.95603 1.01224 0.99691 1.20423 0.94253 0.95179 0.95152 1.21990 1.01756 0.96242 0.98476 1.19526 0.97160 0.94282 0.91984 1.21309 1.30793 1.12899 0.89205 0.90992 1.24999 0.95922 0.96744 0.96039 1.69932 1.46798 1.40857 0.97712 0.86861 0.81546 0.84001 0.77462 1.20845 1.21978 1.18429 1.22678 0.86559 1.00166 0.97405 1.63678 1.06727 1.06285 1.46451 1.23325 0.93401 0.91902 0.99576 1.22728 0.98357 0.97441 0.98472 1.22799 0.98130 0.97483 0.98801 1.22877 0.93903 0.96619 0.91277 0.89383 1.23440 0.95957 0.87100 0.93153 0.89149 1.23171 1.00847 0.99802 0.95014 1.23225 1.01101 0.96529 0.98367 1.23386 1.01035 0.94514 0.84204 1.88619 1.80781 1.43280 1.15666 0.95195 0.91745 0.93754 0.92259 0.92871 0.95469 0.94971 0.98069 0.93192 0.91747 0.93355 0.89546 0.93544 0.91048 0.91542 0.91128 0.91780 0.90150 0.90321 0.90485 0.90306 0.92644 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.06 37.16 0.30 -2.17 16 2 C -0.05 -1.01 0.61 -154.51 -0.09 -1.11 16 3 C -0.13 -2.52 6.65 37.16 0.25 -2.27 16 4 C 0.01 0.19 2.80 -27.88 -0.08 0.12 16 5 C -0.50 -14.42 8.43 -34.44 -0.29 -14.71 16 6 H 0.07 2.20 6.12 -52.48 -0.32 1.88 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 9 Si 0.87 22.69 27.47 -169.99 -4.67 18.02 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 13 C 0.06 1.04 2.71 -3.82 -0.01 1.03 16 14 N -0.51 -8.51 4.10 -223.35 -0.92 -9.42 16 15 C 0.05 0.70 4.93 -2.30 -0.01 0.69 16 16 C -0.13 -1.65 7.08 -24.59 -0.17 -1.82 16 17 C -0.13 -1.54 5.27 -24.91 -0.13 -1.67 16 18 C 0.06 0.84 3.30 -66.73 -0.22 0.62 16 19 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 20 C 0.06 0.75 2.47 -26.00 -0.06 0.69 16 21 H 0.09 1.23 6.08 -51.93 -0.32 0.91 16 22 C -0.15 -1.36 6.37 -24.78 -0.16 -1.52 16 23 C -0.15 -1.23 7.16 -24.48 -0.18 -1.41 16 24 C 0.05 0.43 7.25 38.18 0.28 0.71 16 25 O -0.36 -4.71 7.66 -35.23 -0.27 -4.98 16 26 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.06 1.39 6.74 -51.93 -0.35 1.04 16 28 H 0.04 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.06 1.19 5.39 -51.93 -0.28 0.91 16 30 H 0.05 1.13 7.07 -51.93 -0.37 0.76 16 31 H 0.03 0.47 7.05 -51.93 -0.37 0.10 16 32 H 0.03 0.82 6.50 -51.93 -0.34 0.48 16 33 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.06 1.13 5.61 -51.93 -0.29 0.84 16 36 H 0.05 0.85 5.72 -51.93 -0.30 0.55 16 37 H 0.09 1.45 5.98 -51.93 -0.31 1.14 16 38 H 0.05 0.72 6.56 -51.93 -0.34 0.38 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.81 5.58 -51.93 -0.29 0.52 16 42 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.66 6.93 -51.93 -0.36 0.30 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.49 7.14 -51.93 -0.37 0.12 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -31.59 338.15 -9.04 -40.63 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.38 Total: -0.18 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -0.68 Total: -21.07 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.14 Total: -37.51 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.27 Total: -4.98 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.59 -9.04 -40.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375325336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.240 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds