Wall clock time and date at job start Tue Mar 31 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46956 * 2 1 4 4 C 1.53003 * 109.46823 * 240.00265 * 2 1 3 5 5 C 1.50703 * 109.47287 * 60.00332 * 4 2 1 6 6 H 1.08002 * 119.99725 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00351 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99518 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47229 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46830 * 119.99972 * 9 7 5 12 12 H 1.48500 * 109.47650 * 239.99988 * 9 7 5 13 13 C 1.52996 * 109.47548 * 120.00365 * 2 1 3 14 14 N 1.46905 * 109.47032 * 293.76705 * 13 2 1 15 15 C 1.47442 * 111.00175 * 80.52260 * 14 13 2 16 16 C 1.54325 * 107.22846 * 123.26112 * 15 14 13 17 17 C 1.55138 * 103.01967 * 22.28131 * 16 15 14 18 18 C 1.47843 * 110.99873 * 201.37400 * 14 13 2 19 19 H 1.08999 * 110.37537 * 332.56690 * 18 14 13 20 20 C 1.52990 * 110.37855 * 94.80428 * 18 14 13 21 21 H 1.09004 * 110.33667 * 184.58384 * 20 18 14 22 22 C 1.54486 * 110.37090 * 306.82793 * 20 18 14 23 23 C 1.54509 * 104.06135 * 142.92119 * 22 20 18 24 24 C 1.54484 * 104.18642 * 359.93001 * 23 22 20 25 25 O 1.44419 * 110.46928 * 62.26500 * 20 18 14 26 26 H 1.09002 * 109.47220 * 309.28789 * 1 2 3 27 27 H 1.08996 * 109.47427 * 69.28850 * 1 2 3 28 28 H 1.09000 * 109.47312 * 189.28837 * 1 2 3 29 29 H 1.09000 * 109.46759 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47255 * 300.00332 * 3 2 1 31 31 H 1.09000 * 109.46564 * 60.00457 * 3 2 1 32 32 H 1.08998 * 109.46859 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47189 * 299.99662 * 4 2 1 34 34 H 0.97004 * 119.99537 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47342 * 173.76187 * 13 2 1 36 36 H 1.09004 * 109.47014 * 53.75665 * 13 2 1 37 37 H 1.08992 * 109.89243 * 242.66253 * 15 14 13 38 38 H 1.08993 * 109.88867 * 3.69724 * 15 14 13 39 39 H 1.08994 * 110.70466 * 140.66854 * 16 15 14 40 40 H 1.09005 * 110.70093 * 263.72658 * 16 15 14 41 41 H 1.09006 * 110.98909 * 206.25339 * 17 16 15 42 42 H 1.08999 * 110.98449 * 82.43965 * 17 16 15 43 43 H 1.09003 * 110.50775 * 24.27899 * 22 20 18 44 44 H 1.08993 * 110.51234 * 261.56517 * 22 20 18 45 45 H 1.08994 * 110.51527 * 118.64962 * 23 22 20 46 46 H 1.09008 * 110.51315 * 241.22184 * 23 22 20 47 47 H 1.09002 * 110.36649 * 94.91801 * 24 23 22 48 48 H 1.08998 * 110.37270 * 217.25818 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8702 -0.4820 -3.7321 8 7 2.6262 -1.5514 -3.8528 9 14 1.2470 0.3983 -5.2572 10 1 0.4227 1.5655 -4.8530 11 1 2.4018 0.8648 -6.0660 12 1 0.4216 -0.5351 -6.0651 13 6 2.0401 -0.7213 1.2491 14 7 1.6771 0.0525 2.4439 15 6 0.2751 -0.1946 2.8278 16 6 0.2826 -0.6992 4.2862 17 6 1.6348 -0.1699 4.8322 18 6 2.5470 -0.2982 3.5867 19 1 2.9126 -1.3200 3.4858 20 6 3.7201 0.6791 3.6828 21 1 4.4043 0.3731 4.4744 22 6 4.4639 0.7610 2.3313 23 6 4.8670 2.2480 2.2141 24 6 4.3188 2.8919 3.5069 25 8 3.2417 2.0205 3.9226 26 1 -0.3634 0.6507 0.7954 27 1 -0.3634 0.3634 -0.9612 28 1 -0.3634 -1.0142 0.1659 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.1299 -0.7208 -1.2496 33 1 1.6766 -1.7489 -1.2493 34 1 2.8605 -1.8827 -4.7338 35 1 3.1243 -0.8190 1.1950 36 1 1.5884 -1.7117 1.3067 37 1 -0.2970 0.7305 2.7585 38 1 -0.1607 -0.9498 2.1738 39 1 -0.5514 -0.2748 4.8450 40 1 0.2512 -1.7883 4.3173 41 1 1.9979 -0.7948 5.6482 42 1 1.5484 0.8700 5.1474 43 1 3.8012 0.4794 1.5130 44 1 5.3491 0.1252 2.3433 45 1 5.9515 2.3473 2.1682 46 1 4.4055 2.7009 1.3365 47 1 5.0945 2.9267 4.2719 48 1 3.9419 3.8938 3.3015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375325337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:33 Heat of formation + Delta-G solvation = -64.059344 kcal Electronic energy + Delta-G solvation = -24478.207303 eV Core-core repulsion = 21339.021278 eV Total energy + Delta-G solvation = -3139.186026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20613 -39.27955 -37.60043 -34.57184 -33.04173 -31.93307 -31.72185 -28.87790 -28.15578 -27.55446 -26.89882 -24.72914 -23.64611 -22.26071 -21.54405 -20.75951 -19.49763 -18.31597 -17.72906 -17.02830 -16.77553 -16.43724 -15.76262 -15.69199 -15.25683 -15.10411 -14.52738 -14.41821 -14.15486 -13.87010 -13.72292 -13.55704 -13.35014 -13.06847 -12.89686 -12.76469 -12.52943 -12.45787 -12.33745 -12.25832 -12.18260 -11.89004 -11.87350 -11.71289 -11.49007 -11.39085 -11.26600 -10.97786 -10.76812 -10.69754 -10.50156 -10.39813 -9.05322 -8.13668 -6.19824 1.39109 1.40417 1.52531 2.43672 3.04312 3.09428 3.20293 3.67278 3.83631 3.93665 4.07618 4.12348 4.15768 4.22312 4.30162 4.36709 4.40805 4.48973 4.53564 4.69872 4.72116 4.76983 4.78297 4.90543 4.94714 4.95916 5.01402 5.07583 5.08764 5.09840 5.11871 5.18233 5.25257 5.26844 5.29713 5.45042 5.48929 5.54281 5.59601 5.63458 5.71883 5.89624 5.94702 6.06585 6.26322 6.29187 6.42645 6.95017 7.47139 8.98785 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.005146 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.227128 B = 5440.034767 C = 6173.893232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C -0.098 4.098 4 C 0.042 3.958 5 C -0.510 4.510 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.064 3.936 14 N -0.510 5.510 15 C 0.040 3.960 16 C -0.136 4.136 17 C -0.110 4.110 18 C 0.068 3.932 19 H 0.064 0.936 20 C 0.098 3.902 21 H 0.080 0.920 22 C -0.179 4.179 23 C -0.149 4.149 24 C 0.047 3.953 25 O -0.374 6.374 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.062 0.938 32 H -0.015 1.015 33 H -0.018 1.018 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 4.802 19.049 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.047 4.047 3 C -0.155 4.155 4 C 0.005 3.995 5 C -0.548 4.548 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.064 4.064 14 N -0.233 5.233 15 C -0.088 4.088 16 C -0.175 4.175 17 C -0.148 4.148 18 C -0.040 4.040 19 H 0.082 0.918 20 C 0.040 3.960 21 H 0.098 0.902 22 C -0.216 4.216 23 C -0.187 4.187 24 C -0.030 4.030 25 O -0.293 6.293 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.004 0.996 33 H 0.000 1.000 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.949 5.289 18.887 19.637 hybrid contribution 0.107 -0.932 -1.457 1.733 sum 1.057 4.357 17.430 17.997 Atomic orbital electron populations 1.21869 0.95263 0.99932 1.00927 1.20392 0.95487 0.95951 0.92830 1.21468 0.98967 0.95302 0.99784 1.18990 0.94009 0.93876 0.92674 1.21623 1.29983 1.11719 0.91506 0.91943 1.25877 0.95764 0.95899 1.02415 1.70114 1.38949 1.24917 1.23896 0.85563 0.78161 0.78811 0.79546 1.18695 1.20760 1.20785 1.22461 0.99717 0.93592 0.90621 1.63338 1.02532 1.54588 1.02878 1.23022 0.89891 1.00121 0.95742 1.22783 0.98556 1.00688 0.95439 1.22588 0.93957 1.02286 0.96008 1.22691 0.93914 0.96098 0.91330 0.91809 1.22838 0.93757 0.83944 0.95482 0.90245 1.23433 1.00878 0.97332 0.99974 1.22851 1.01582 0.95310 0.98980 1.23458 0.89979 0.94857 0.94676 1.89137 1.38905 1.15902 1.85368 0.91647 0.94132 0.94513 0.94713 0.95082 0.91915 0.99639 0.99969 0.93199 0.91300 0.95951 0.91122 0.93030 0.89695 0.91293 0.89527 0.90539 0.89301 0.90934 0.89885 0.92189 0.91160 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 6.96 71.98 0.50 -4.22 16 2 C -0.05 -1.88 0.61 -52.18 -0.03 -1.91 16 3 C -0.10 -3.86 7.47 71.98 0.54 -3.33 16 4 C 0.04 2.20 4.04 29.85 0.12 2.32 16 5 C -0.51 -28.61 7.52 25.60 0.19 -28.42 16 6 H 0.06 3.41 5.73 -2.91 -0.02 3.40 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.06 2.22 3.14 86.30 0.27 2.49 16 14 N -0.51 -14.74 3.32 -860.68 -2.86 -17.60 16 15 C 0.04 1.04 4.94 86.65 0.43 1.47 16 16 C -0.14 -2.75 6.94 31.78 0.22 -2.53 16 17 C -0.11 -2.24 6.44 31.98 0.21 -2.03 16 18 C 0.07 1.66 2.50 45.38 0.11 1.77 16 19 H 0.06 1.53 7.81 -2.39 -0.02 1.52 16 20 C 0.10 2.33 3.26 31.10 0.10 2.43 16 21 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 22 C -0.18 -4.69 6.16 31.61 0.19 -4.49 16 23 C -0.15 -3.54 7.08 31.61 0.22 -3.32 16 24 C 0.05 1.00 7.65 72.49 0.55 1.56 16 25 O -0.37 -9.77 10.26 -148.98 -1.53 -11.30 16 26 H 0.06 2.19 5.84 -2.39 -0.01 2.18 16 27 H 0.04 1.72 6.37 -2.39 -0.02 1.70 16 28 H 0.04 1.37 7.40 -2.39 -0.02 1.35 16 29 H 0.03 1.36 6.18 -2.39 -0.01 1.35 16 30 H 0.03 1.31 6.62 -2.39 -0.02 1.30 16 31 H 0.06 2.29 7.44 -2.39 -0.02 2.28 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.07 2.46 5.45 -2.39 -0.01 2.45 16 36 H 0.02 0.80 7.58 -2.39 -0.02 0.78 16 37 H 0.07 1.89 7.42 -2.39 -0.02 1.87 16 38 H 0.05 1.45 5.59 -2.39 -0.01 1.43 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.08 1.72 7.19 -2.39 -0.02 1.70 16 43 H 0.09 2.83 1.94 -2.39 0.00 2.83 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 1.63 7.52 -2.38 -0.02 1.61 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.73 343.70 2.94 -60.78 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.92 Total: 16.25 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 4.10 Total: -37.92 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.57 Total: -74.85 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.53 Total: -11.30 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.73 2.94 -60.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375325337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.274 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds