Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 H 1.08997 * 115.55341 * 29.41835 * 5 4 2 7 7 C 1.53002 * 117.49654 * 243.74295 * 5 4 2 8 8 C 1.52999 * 117.49718 * 175.08951 * 5 4 2 9 9 H 1.09004 * 117.49836 * 359.96930 * 8 5 4 10 10 C 1.50702 * 117.49898 * 214.97768 * 8 5 4 11 11 O 1.21285 * 119.99821 * 359.97438 * 10 8 5 12 12 N 1.34773 * 119.99939 * 179.97438 * 10 8 5 13 13 C 1.46506 * 120.00083 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47281 * 89.99607 * 13 12 10 15 15 H 1.07999 * 119.99870 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00243 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47165 * 60.00206 * 18 16 14 20 20 H 1.48504 * 109.47347 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47180 * 300.00057 * 18 16 14 22 22 C 1.46502 * 120.00408 * 359.97438 * 12 10 8 23 23 C 1.52998 * 109.46714 * 90.00012 * 22 12 10 24 24 C 1.53003 * 109.47052 * 175.00299 * 23 22 12 25 25 C 1.53003 * 109.47484 * 295.00179 * 23 22 12 26 26 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 27 27 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 28 28 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 30 30 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 31 31 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 32 32 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 34 34 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 35 35 H 1.09000 * 117.49888 * 0.02562 * 7 5 4 36 36 H 1.09005 * 117.49831 * 145.01661 * 7 5 4 37 37 H 1.08989 * 109.47446 * 209.99968 * 13 12 10 38 38 H 1.09007 * 109.46407 * 329.99884 * 13 12 10 39 39 H 0.97000 * 120.00448 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47152 * 210.00481 * 22 12 10 41 41 H 1.08997 * 109.47073 * 330.00643 * 22 12 10 42 42 H 1.09004 * 109.47029 * 55.00754 * 23 22 12 43 43 H 1.09001 * 109.47323 * 59.99766 * 24 23 22 44 44 H 1.09004 * 109.47226 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47104 * 300.00070 * 24 23 22 46 46 H 1.08997 * 109.46842 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.46749 * 300.00146 * 25 23 22 48 48 H 1.09000 * 109.46784 * 59.99866 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 4.0720 -0.0345 0.6435 7 6 4.1696 -2.2345 1.1122 8 6 4.2801 -1.4217 2.4045 9 1 3.6643 -1.7316 3.2489 10 6 5.6321 -0.8579 2.7584 11 8 6.1133 0.0303 2.0872 12 7 6.3065 -1.3407 3.8207 13 6 7.6207 -0.7923 4.1650 14 6 7.4491 0.3628 5.1175 15 1 6.4600 0.6585 5.4350 16 6 8.5545 1.0421 5.5837 17 7 9.7589 0.6823 5.1968 18 14 8.3419 2.4734 6.7650 19 1 7.6648 2.0003 7.9991 20 1 9.6739 3.0294 7.1140 21 1 7.5178 3.5280 6.1215 22 6 5.7251 -2.4132 4.6318 23 6 6.1535 -3.7691 4.0670 24 6 5.6505 -4.8856 4.9844 25 6 5.5583 -3.9506 2.6693 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7199 1.2950 34 1 1.7517 -0.1584 2.1369 35 1 3.4811 -3.0795 1.1057 36 1 5.0748 -2.3611 0.5183 37 1 8.2249 -1.5664 4.6378 38 1 8.1182 -0.4455 3.2593 39 1 10.5367 1.1599 5.5250 40 1 6.0743 -2.3211 5.6602 41 1 4.6380 -2.3374 4.6091 42 1 7.2411 -3.8105 4.0071 43 1 4.5629 -4.8443 5.0445 44 1 5.9561 -5.8516 4.5823 45 1 6.0745 -4.7564 5.9802 46 1 5.8632 -4.9167 2.2672 47 1 4.4707 -3.9092 2.7293 48 1 5.9166 -3.1552 2.0158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387886056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -40.240547 kcal Electronic energy + Delta-G solvation = -23294.078474 eV Core-core repulsion = 20155.925308 eV Total energy + Delta-G solvation = -3138.153165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81575 -37.45386 -36.17708 -34.99736 -33.48678 -32.19807 -28.23876 -27.48891 -27.18767 -26.69814 -25.51934 -24.06887 -22.01772 -20.99601 -20.17933 -19.60362 -18.06671 -16.90355 -16.34859 -15.46152 -15.22767 -14.61994 -14.59561 -14.33515 -14.08033 -13.92409 -13.51926 -13.09621 -12.89002 -12.59378 -12.48357 -12.23164 -12.14336 -11.97583 -11.69023 -11.62820 -11.60682 -11.28815 -11.03538 -10.93362 -10.87360 -10.81261 -10.66220 -10.54951 -10.50189 -10.32584 -10.07996 -9.73912 -9.69483 -9.58542 -8.79783 -8.40076 -7.57366 -6.01019 -4.05624 3.24755 3.33803 3.37920 3.41856 3.91562 4.18824 4.47206 4.67213 4.84597 4.87619 5.04459 5.09503 5.16107 5.21191 5.23956 5.32774 5.42885 5.46337 5.50828 5.56031 5.66740 5.74010 5.76248 5.78608 5.82514 5.85722 5.87022 5.93522 5.99919 6.01353 6.12103 6.14096 6.18160 6.26250 6.26660 6.34237 6.37371 6.56231 6.58301 6.62614 7.12861 7.48690 7.61472 7.95900 8.27627 8.51017 8.94337 9.18766 9.59514 11.06926 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.005106 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.124336 B = 5482.606546 C = 7001.191186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.083 4.083 5 C -0.130 4.130 6 H 0.118 0.882 7 C -0.147 4.147 8 C -0.181 4.181 9 H 0.116 0.884 10 C 0.535 3.465 11 O -0.544 6.544 12 N -0.591 5.591 13 C 0.247 3.753 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.118 3.882 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.151 4.151 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.751 -9.184 -6.496 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.120 4.120 5 C -0.148 4.148 6 H 0.136 0.864 7 C -0.184 4.184 8 C -0.202 4.202 9 H 0.133 0.867 10 C 0.321 3.679 11 O -0.422 6.422 12 N -0.321 5.321 13 C 0.128 3.872 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.006 4.006 23 C -0.136 4.136 24 C -0.199 4.199 25 C -0.208 4.208 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.261 -8.653 -6.801 18.815 hybrid contribution 0.045 0.723 0.928 1.177 sum -15.216 -7.930 -5.873 18.136 Atomic orbital electron populations 1.21846 0.95564 1.01401 1.01614 1.21060 0.95110 0.96605 0.98382 1.21913 1.01980 0.95642 1.01323 1.21250 0.92558 1.00240 0.97995 1.22601 0.94595 0.97588 1.00042 0.86445 1.23165 1.02791 0.94333 0.98109 1.22499 0.97732 1.06420 0.93548 0.86651 1.19376 0.85215 0.82364 0.80902 1.90653 1.69262 1.30461 1.51873 1.48116 1.21346 1.35460 1.27225 1.19246 0.77711 0.93545 0.96694 1.21408 0.92982 1.15192 1.26822 0.92574 1.24922 0.95056 0.97363 0.96708 1.69924 0.97781 1.41239 1.44517 0.86577 0.77201 0.82676 0.81076 1.20276 1.21183 1.20201 1.21515 0.97572 0.85813 0.95712 1.21574 1.01335 0.95089 0.95635 1.21757 1.00777 0.97888 0.99526 1.22273 1.00551 1.01247 0.96775 0.92772 0.92895 0.92913 0.91171 0.93146 0.92755 0.91825 0.91953 0.91579 0.88378 0.88511 0.95108 0.94022 0.92716 0.90268 0.91675 0.90820 0.92944 0.92948 0.92604 0.93618 0.92510 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.15 0.34 -0.89 16 2 C -0.09 -0.93 2.92 -90.62 -0.26 -1.19 16 3 C -0.15 -1.66 9.01 37.16 0.33 -1.33 16 4 C -0.08 -0.90 4.96 -26.73 -0.13 -1.04 16 5 C -0.13 -1.78 5.03 -90.62 -0.46 -2.23 16 6 H 0.12 1.88 5.91 -51.93 -0.31 1.58 16 7 C -0.15 -1.84 6.54 -26.70 -0.17 -2.02 16 8 C -0.18 -2.78 3.49 -91.74 -0.32 -3.10 16 9 H 0.12 1.58 6.44 -51.93 -0.33 1.24 16 10 C 0.53 11.34 6.25 -10.99 -0.07 11.27 16 11 O -0.54 -14.03 15.84 5.55 0.09 -13.94 16 12 N -0.59 -12.69 2.34 -175.06 -0.41 -13.10 16 13 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 14 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 18 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 C 0.12 1.97 4.96 -4.04 -0.02 1.95 16 23 C -0.12 -1.65 3.13 -90.62 -0.28 -1.93 16 24 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 25 C -0.15 -1.94 6.76 37.16 0.25 -1.69 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 33 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.98 7.56 -51.93 -0.39 0.59 16 36 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 37 H 0.03 0.83 8.07 -51.94 -0.42 0.41 16 38 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 41 H 0.06 0.94 5.99 -51.93 -0.31 0.63 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.64 6.21 -51.93 -0.32 0.31 16 48 H 0.06 0.97 4.24 -51.93 -0.22 0.75 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -32.26 369.19 -8.80 -41.05 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.86 Total: 0.17 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.90 Total: -10.68 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.33 Total: -39.31 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.26 -8.80 -41.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387886056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.812 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds