Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 C 1.52998 * 109.46666 * 174.98496 * 3 2 1 5 5 C 1.52998 * 109.46928 * 185.48593 * 4 3 2 6 6 C 1.52996 * 109.47235 * 64.99667 * 5 4 3 7 7 C 1.53008 * 109.47623 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47610 * 65.48809 * 4 3 2 9 9 O 1.21284 * 119.99730 * 34.47111 * 8 4 3 10 10 N 1.34774 * 120.00053 * 214.47419 * 8 4 3 11 11 C 1.46921 * 120.63310 * 354.50773 * 10 8 4 12 12 C 1.52763 * 109.00759 * 233.58683 * 11 10 8 13 13 C 1.53038 * 109.38189 * 305.58488 * 12 11 10 14 14 C 1.50700 * 109.44752 * 181.25666 * 13 12 11 15 15 H 1.07999 * 119.99753 * 245.27960 * 14 13 12 16 16 C 1.37874 * 120.00252 * 65.28037 * 14 13 12 17 17 N 1.31520 * 119.99968 * 5.22353 * 16 14 13 18 18 Si 1.86805 * 120.00065 * 185.21727 * 16 14 13 19 19 H 1.48497 * 109.46459 * 95.00030 * 18 16 14 20 20 H 1.48501 * 109.46793 * 214.99935 * 18 16 14 21 21 H 1.48497 * 109.47086 * 334.99949 * 18 16 14 22 22 C 1.53042 * 109.53956 * 61.23943 * 13 12 11 23 23 C 1.46927 * 120.62765 * 174.78816 * 10 8 4 24 24 H 1.09004 * 109.46617 * 60.00414 * 1 2 3 25 25 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47527 * 300.00643 * 1 2 3 27 27 H 1.08996 * 109.47527 * 239.99357 * 2 1 3 28 28 H 1.09004 * 109.46617 * 119.99586 * 2 1 3 29 29 H 1.09002 * 109.46426 * 294.97868 * 3 2 1 30 30 H 1.08991 * 109.47008 * 54.98383 * 3 2 1 31 31 H 1.09001 * 109.47317 * 305.48377 * 4 3 2 32 32 H 1.09005 * 109.47681 * 185.00218 * 5 4 3 33 33 H 1.09001 * 109.47126 * 305.00057 * 5 4 3 34 34 H 1.08999 * 109.47564 * 300.00520 * 6 5 4 35 35 H 1.09001 * 109.46962 * 60.00665 * 6 5 4 36 36 H 1.09001 * 109.46401 * 60.00331 * 7 6 5 37 37 H 1.08993 * 109.47518 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46793 * 300.00424 * 7 6 5 39 39 H 1.09004 * 109.58480 * 353.41442 * 11 10 8 40 40 H 1.08996 * 109.58994 * 113.84042 * 11 10 8 41 41 H 1.09001 * 109.56272 * 185.54945 * 12 11 10 42 42 H 1.08996 * 109.36502 * 65.49754 * 12 11 10 43 43 H 1.09000 * 109.45966 * 301.22109 * 13 12 11 44 44 H 0.96993 * 119.99998 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.49964 * 178.68301 * 22 13 12 46 46 H 1.08998 * 109.51844 * 58.60590 * 22 13 12 47 47 H 1.09010 * 109.58241 * 246.15616 * 23 10 8 48 48 H 1.08997 * 109.58997 * 6.43489 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4443 0.1261 5 6 4.0635 2.8842 0.2637 6 6 3.5481 3.4792 1.5756 7 6 4.0473 4.9190 1.7135 8 6 4.1713 0.8180 -1.1031 9 8 3.6443 0.9712 -2.1847 10 7 5.2994 0.0876 -1.0005 11 6 6.0154 -0.0083 0.2788 12 6 7.4752 0.3868 0.0628 13 6 8.0722 -0.4678 -1.0576 14 6 9.5209 -0.1007 -1.2510 15 1 9.8438 0.3546 -2.1756 16 6 10.4342 -0.3460 -0.2477 17 7 10.0629 -0.9925 0.8358 18 14 12.1989 0.2399 -0.4272 19 1 12.3531 1.5576 0.2398 20 1 13.1139 -0.7447 0.2041 21 1 12.5323 0.3723 -1.8682 22 6 7.3045 -0.2165 -2.3575 23 6 5.8398 -0.6229 -2.1675 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7519 1.9297 -0.9316 30 1 1.6052 1.9816 0.8416 31 1 3.8572 0.8728 1.0070 32 1 5.1535 2.8928 0.2642 33 1 3.6959 3.4775 -0.5735 34 1 2.4581 3.4707 1.5751 35 1 3.9157 2.8859 2.4128 36 1 3.6800 5.5126 0.8763 37 1 3.6805 5.3428 2.6483 38 1 5.1373 4.9271 1.7143 39 1 5.5594 0.6657 1.0041 40 1 5.9678 -1.0326 0.6484 41 1 8.0370 0.2249 0.9827 42 1 7.5273 1.4394 -0.2154 43 1 7.9973 -1.5217 -0.7896 44 1 10.7053 -1.1648 1.5418 45 1 7.7449 -0.8078 -3.1602 46 1 7.3583 0.8416 -2.6135 47 1 5.7775 -1.6985 -2.0015 48 1 5.2664 -0.3565 -3.0554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397218833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -82.667884 kcal Electronic energy + Delta-G solvation = -23516.977551 eV Core-core repulsion = 20376.984598 eV Total energy + Delta-G solvation = -3139.992953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06181 -37.23455 -36.06171 -34.08813 -33.45354 -31.53648 -30.58016 -29.96772 -26.40189 -26.29238 -24.12431 -22.67698 -22.20411 -21.47513 -20.82987 -19.52681 -18.02835 -17.16834 -16.21666 -15.54682 -15.16167 -15.02285 -14.67314 -14.52042 -13.80205 -13.64615 -13.48523 -13.13746 -12.94054 -12.72589 -12.70682 -12.46231 -12.26186 -12.03401 -11.84041 -11.63089 -11.36982 -11.26854 -11.07515 -11.06113 -10.94261 -10.66281 -10.57771 -10.52845 -10.40746 -10.33161 -10.16164 -9.65804 -9.24912 -9.10587 -8.92191 -8.38467 -7.98318 -6.06122 -4.09317 3.02315 3.27227 3.34918 3.38407 3.50966 4.40575 4.62671 4.72404 4.90165 5.01901 5.10500 5.16383 5.20412 5.25003 5.33617 5.51630 5.57162 5.62761 5.68038 5.76134 5.79176 5.81970 5.89127 5.89251 5.93469 5.97103 6.05194 6.07423 6.13161 6.16395 6.22670 6.26720 6.31747 6.34565 6.40052 6.46789 6.63796 6.89865 7.03312 7.12600 7.21243 7.64306 7.88579 7.95286 7.97676 8.38815 8.62460 8.94741 9.55304 11.02057 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.004471 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.656682 B = 6261.213061 C = 7061.333205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.153 4.153 8 C 0.518 3.482 9 O -0.558 6.558 10 N -0.600 5.600 11 C 0.102 3.898 12 C -0.118 4.118 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.122 4.122 23 C 0.110 3.890 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.033 0.967 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 4.891 3.180 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.210 4.210 8 C 0.306 3.694 9 O -0.438 6.438 10 N -0.332 5.332 11 C -0.020 4.020 12 C -0.156 4.156 13 C 0.029 3.971 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.161 4.161 23 C -0.012 4.012 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.925 4.882 2.778 15.947 hybrid contribution 1.232 0.229 0.086 1.256 sum -13.693 5.111 2.864 14.894 Atomic orbital electron populations 1.21731 0.95951 1.01341 1.01533 1.21563 0.95796 0.97047 1.02113 1.21552 0.92582 0.97182 1.02764 1.21444 0.96763 0.97662 0.97149 1.21533 1.01388 0.93470 0.98314 1.21570 1.00787 0.96310 0.97315 1.21773 1.01564 0.96414 1.01288 1.20518 0.80234 0.78180 0.90444 1.90614 1.62595 1.61325 1.29242 1.48238 1.24316 1.48626 1.12035 1.21956 0.95166 1.01115 0.83754 1.21862 0.91013 0.99191 1.03578 1.18640 0.93443 0.96030 0.88967 1.21191 0.92567 1.40213 1.01140 0.92739 1.24951 0.98495 0.94817 0.95551 1.69919 1.34896 1.40212 1.07924 0.86645 0.84948 0.78561 0.78267 1.20766 1.21271 1.19920 1.21992 0.92644 1.00499 1.00923 1.21688 0.95977 0.95310 0.88208 0.92788 0.93005 0.92968 0.91779 0.92282 0.90815 0.91236 0.89114 0.91133 0.91321 0.91744 0.91821 0.92835 0.92886 0.92498 0.91217 0.92033 0.89233 0.94137 0.94906 0.93027 0.92163 0.93090 0.92319 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.50 5.67 -26.73 -0.15 -1.65 16 3 C -0.10 -1.22 4.32 -26.73 -0.12 -1.34 16 4 C -0.11 -1.45 1.39 -91.77 -0.13 -1.57 16 5 C -0.11 -1.36 4.55 -26.73 -0.12 -1.48 16 6 C -0.12 -1.22 5.70 -26.73 -0.15 -1.38 16 7 C -0.15 -1.45 9.91 37.16 0.37 -1.09 16 8 C 0.52 8.89 5.84 -10.99 -0.06 8.83 16 9 O -0.56 -11.14 15.36 5.55 0.09 -11.06 16 10 N -0.60 -10.72 2.98 -173.03 -0.52 -11.23 16 11 C 0.10 1.79 6.12 -3.93 -0.02 1.77 16 12 C -0.12 -2.54 5.19 -26.83 -0.14 -2.67 16 13 C 0.05 1.13 1.94 -91.73 -0.18 0.95 16 14 C -0.51 -13.64 8.49 -34.44 -0.29 -13.93 16 15 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 16 C 0.06 1.69 5.26 -17.82 -0.09 1.60 16 17 N -0.89 -24.45 11.94 55.43 0.66 -23.79 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 23 C 0.11 2.05 6.44 -3.71 -0.02 2.02 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.90 7.40 -51.93 -0.38 0.52 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.98 7.66 -51.93 -0.40 0.59 16 30 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 31 H 0.09 1.13 6.21 -51.93 -0.32 0.80 16 32 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.58 6.45 -51.93 -0.34 0.25 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.05 5.48 -51.93 -0.28 0.76 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.09 2.13 6.68 -51.93 -0.35 1.79 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.85 8.12 -51.93 -0.42 0.43 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 48 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -28.53 366.64 -9.22 -37.75 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -9.07 Total: 0.71 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.89 Total: -13.70 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.15 Total: -35.02 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.53 -9.22 -37.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397218833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.917 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds