Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 C 1.52999 * 109.47318 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47384 * 184.99967 * 4 3 2 6 6 H 1.09000 * 109.47095 * 54.72936 * 5 4 3 7 7 C 1.53007 * 109.46953 * 294.72775 * 5 4 3 8 8 C 1.52990 * 109.47252 * 295.55510 * 7 5 4 9 9 C 1.50703 * 109.47032 * 174.73149 * 5 4 3 10 10 O 1.21273 * 120.00413 * 6.74488 * 9 5 4 11 11 N 1.34777 * 119.99579 * 186.74369 * 9 5 4 12 12 C 1.46929 * 120.63508 * 3.17692 * 11 9 5 13 13 C 1.53615 * 108.54630 * 126.36510 * 12 11 9 14 14 C 1.53039 * 109.24537 * 54.85507 * 13 12 11 15 15 C 1.50696 * 109.45333 * 178.49637 * 14 13 12 16 16 H 1.07999 * 120.00317 * 120.05707 * 15 14 13 17 17 C 1.37879 * 119.99942 * 300.06640 * 15 14 13 18 18 N 1.31514 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00111 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47185 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47658 * 119.99593 * 19 17 15 22 22 H 1.48498 * 109.47230 * 239.99876 * 19 17 15 23 23 C 1.53036 * 109.53678 * 298.51294 * 14 13 12 24 24 C 1.46927 * 120.62806 * 183.45101 * 11 9 5 25 25 H 1.09000 * 109.46976 * 60.00374 * 1 2 3 26 26 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47570 * 300.00373 * 1 2 3 28 28 H 1.09000 * 109.47570 * 239.99627 * 2 1 3 29 29 H 1.09000 * 109.46976 * 119.99626 * 2 1 3 30 30 H 1.09000 * 109.47276 * 59.99447 * 3 2 1 31 31 H 1.09000 * 109.46963 * 299.99634 * 3 2 1 32 32 H 1.09004 * 109.47201 * 64.99824 * 4 3 2 33 33 H 1.08995 * 109.47033 * 305.00055 * 4 3 2 34 34 H 1.09007 * 109.46688 * 55.55731 * 7 5 4 35 35 H 1.08997 * 109.46951 * 175.54999 * 7 5 4 36 36 H 1.08997 * 109.47144 * 305.01253 * 8 7 5 37 37 H 1.09002 * 109.47333 * 65.01746 * 8 7 5 38 38 H 1.09003 * 109.47497 * 185.01475 * 8 7 5 39 39 H 1.08999 * 109.58612 * 246.20380 * 12 11 9 40 40 H 1.09001 * 109.58066 * 6.62024 * 12 11 9 41 41 H 1.09006 * 109.63882 * 294.86199 * 13 12 11 42 42 H 1.09004 * 109.43267 * 174.72797 * 13 12 11 43 43 H 1.09007 * 109.45724 * 58.53102 * 14 13 12 44 44 H 0.96998 * 120.00140 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.49800 * 301.40932 * 23 14 13 46 46 H 1.09006 * 109.49768 * 181.31439 * 23 14 13 47 47 H 1.08996 * 109.59105 * 353.37060 * 24 11 9 48 48 H 1.08999 * 109.58914 * 113.66360 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8796 0.1264 6 1 3.6411 3.3449 1.0090 7 6 3.6814 3.6730 -1.1198 8 6 4.3860 3.0865 -2.3446 9 6 5.5811 2.8703 0.2571 10 8 6.1947 1.8321 0.1282 11 7 6.2420 4.0157 0.5174 12 6 5.5083 5.2682 0.7449 13 6 5.9668 5.8668 2.0833 14 6 7.4891 6.0240 2.0705 15 6 7.9404 6.6452 3.3672 16 1 8.6256 6.1137 4.0109 17 6 7.4784 7.8920 3.7318 18 7 6.6443 8.5394 2.9478 19 14 8.0373 8.6618 5.3394 20 1 8.9684 7.7366 6.0339 21 1 8.7308 9.9446 5.0594 22 1 6.8566 8.9157 6.2034 23 6 8.1440 4.6504 1.9080 24 6 7.7100 4.0368 0.5730 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 1.0081 -0.9305 33 1 3.9329 0.8533 0.8427 34 1 2.6018 3.6136 -1.2585 35 1 3.9750 4.7154 -0.9961 36 1 5.4615 3.0640 -2.1690 37 1 4.0253 2.0731 -2.5208 38 1 4.1732 3.7046 -3.2169 39 1 5.7205 5.9680 -0.0634 40 1 4.4384 5.0633 0.7820 41 1 5.6763 5.2050 2.8993 42 1 5.5014 6.8426 2.2226 43 1 7.7808 6.6660 1.2393 44 1 6.3196 9.4168 3.2041 45 1 7.8330 4.0001 2.7255 46 1 9.2284 4.7605 1.9224 47 1 8.0934 3.0194 0.4969 48 1 8.0984 4.6363 -0.2504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397241004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = -79.217628 kcal Electronic energy + Delta-G solvation = -23359.689922 eV Core-core repulsion = 20219.846584 eV Total energy + Delta-G solvation = -3139.843338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11690 -37.24413 -36.23414 -34.24682 -33.39278 -31.16970 -30.13650 -30.03160 -27.23772 -25.95932 -23.63932 -23.28984 -22.25887 -21.69722 -20.57546 -19.20823 -18.07049 -16.78659 -16.16076 -15.89431 -15.54205 -15.12210 -14.57084 -14.39727 -13.93135 -13.66439 -13.25884 -13.12132 -13.00605 -12.76999 -12.65000 -12.54867 -12.27184 -12.15620 -11.61394 -11.50862 -11.46068 -11.29713 -11.00331 -10.95525 -10.90996 -10.81956 -10.60955 -10.51578 -10.40778 -10.28937 -10.09792 -9.64999 -9.23710 -9.16104 -8.88818 -8.39236 -7.95173 -6.04534 -4.10422 3.06798 3.26139 3.34771 3.39024 3.52482 4.39908 4.63491 4.70908 4.83421 4.99666 5.03875 5.06004 5.24786 5.31664 5.34408 5.42636 5.56979 5.64472 5.66785 5.70121 5.77905 5.79082 5.85585 5.90201 5.95188 5.98420 6.03256 6.09798 6.11351 6.15388 6.17501 6.25307 6.28896 6.36867 6.46626 6.49502 6.66878 6.91534 7.04502 7.16246 7.28233 7.65894 7.91088 7.98713 8.03501 8.39393 8.64259 8.93245 9.54756 11.00926 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.003792 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.033663 B = 7382.114720 C = 7794.765116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.120 4.120 8 C -0.153 4.153 9 C 0.518 3.482 10 O -0.561 6.561 11 N -0.600 5.600 12 C 0.102 3.898 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.259 0.741 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -10.334 -8.216 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.137 4.137 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.157 4.157 8 C -0.210 4.210 9 C 0.306 3.694 10 O -0.440 6.440 11 N -0.332 5.332 12 C -0.021 4.021 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.122 0.878 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.859 -10.692 -8.285 16.738 hybrid contribution 0.273 0.692 0.995 1.242 sum -9.586 -10.000 -7.291 15.654 Atomic orbital electron populations 1.21779 0.96109 1.01344 1.01735 1.21523 0.95533 0.97135 1.02048 1.21687 0.95438 0.96622 1.02085 1.21414 0.94390 0.94599 1.03317 1.21377 0.92845 0.98462 1.00257 0.88859 1.21646 1.00881 0.99713 0.93510 1.21817 1.01001 1.00828 0.97367 1.20495 0.89758 0.83153 0.75950 1.90618 1.69718 1.31374 1.52323 1.48223 1.07363 1.08948 1.68618 1.22212 0.95072 0.84379 1.00389 1.22104 1.00548 1.01626 0.91983 1.18631 0.90960 0.90151 0.97237 1.21251 1.26853 1.01661 1.05113 0.92687 1.24959 0.95071 0.97045 0.96926 1.69844 1.32483 1.13807 1.36963 0.86564 0.78544 0.79206 0.83859 1.19847 1.21058 1.21064 1.21996 1.00005 0.99470 0.94610 1.21667 0.79231 1.01326 0.98873 0.92859 0.93018 0.92780 0.92127 0.92053 0.91993 0.91801 0.91097 0.91512 0.90891 0.90815 0.92605 0.92460 0.92790 0.92054 0.91136 0.94289 0.87830 0.95508 0.93057 0.93020 0.92273 0.90484 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.17 4.85 -26.73 -0.13 -1.30 16 4 C -0.10 -1.22 3.85 -26.73 -0.10 -1.32 16 5 C -0.11 -1.45 1.65 -91.77 -0.15 -1.60 16 6 H 0.09 1.22 7.19 -51.93 -0.37 0.84 16 7 C -0.12 -1.38 5.21 -26.73 -0.14 -1.52 16 8 C -0.15 -1.80 9.33 37.15 0.35 -1.46 16 9 C 0.52 8.95 5.44 -10.98 -0.06 8.89 16 10 O -0.56 -11.24 15.41 5.56 0.09 -11.15 16 11 N -0.60 -10.73 2.97 -172.50 -0.51 -11.24 16 12 C 0.10 1.78 5.08 -3.49 -0.02 1.77 16 13 C -0.12 -2.71 5.17 -26.39 -0.14 -2.85 16 14 C 0.05 1.15 2.06 -91.74 -0.19 0.96 16 15 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.26 11.31 55.43 0.63 -23.63 16 19 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 24 C 0.11 2.06 6.44 -3.71 -0.02 2.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 32 H 0.07 0.91 6.42 -51.93 -0.33 0.58 16 33 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.07 0.70 6.49 -51.93 -0.34 0.37 16 35 H 0.07 0.88 5.87 -51.93 -0.30 0.58 16 36 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 37 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.06 4.85 -51.93 -0.25 0.81 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -28.39 358.72 -9.13 -37.52 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.79 Total: 0.83 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.92 Total: -13.51 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.11 Total: -34.87 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.39 -9.13 -37.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397241004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.701 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds