Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 C 1.52999 * 109.47318 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47384 * 184.99967 * 4 3 2 6 6 H 1.09000 * 109.47095 * 54.72936 * 5 4 3 7 7 C 1.53007 * 109.46953 * 294.72775 * 5 4 3 8 8 C 1.52990 * 109.47252 * 295.55510 * 7 5 4 9 9 C 1.50703 * 109.47032 * 174.73149 * 5 4 3 10 10 O 1.21273 * 120.00413 * 6.74488 * 9 5 4 11 11 N 1.34777 * 119.99579 * 186.74369 * 9 5 4 12 12 C 1.46929 * 120.63508 * 3.17692 * 11 9 5 13 13 C 1.53615 * 108.54630 * 126.36510 * 12 11 9 14 14 C 1.53039 * 109.24537 * 54.85507 * 13 12 11 15 15 C 1.50696 * 109.45333 * 178.49637 * 14 13 12 16 16 H 1.07999 * 120.00317 * 120.05707 * 15 14 13 17 17 C 1.37879 * 119.99942 * 300.06640 * 15 14 13 18 18 N 1.31514 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00111 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47185 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47658 * 119.99593 * 19 17 15 22 22 H 1.48498 * 109.47230 * 239.99876 * 19 17 15 23 23 C 1.53036 * 109.53678 * 298.51294 * 14 13 12 24 24 C 1.46927 * 120.62806 * 183.45101 * 11 9 5 25 25 H 1.09000 * 109.46976 * 60.00374 * 1 2 3 26 26 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47570 * 300.00373 * 1 2 3 28 28 H 1.09000 * 109.47570 * 239.99627 * 2 1 3 29 29 H 1.09000 * 109.46976 * 119.99626 * 2 1 3 30 30 H 1.09000 * 109.47276 * 59.99447 * 3 2 1 31 31 H 1.09000 * 109.46963 * 299.99634 * 3 2 1 32 32 H 1.09004 * 109.47201 * 64.99824 * 4 3 2 33 33 H 1.08995 * 109.47033 * 305.00055 * 4 3 2 34 34 H 1.09007 * 109.46688 * 55.55731 * 7 5 4 35 35 H 1.08997 * 109.46951 * 175.54999 * 7 5 4 36 36 H 1.08997 * 109.47144 * 305.01253 * 8 7 5 37 37 H 1.09002 * 109.47333 * 65.01746 * 8 7 5 38 38 H 1.09003 * 109.47497 * 185.01475 * 8 7 5 39 39 H 1.08999 * 109.58612 * 246.20380 * 12 11 9 40 40 H 1.09001 * 109.58066 * 6.62024 * 12 11 9 41 41 H 1.09006 * 109.63882 * 294.86199 * 13 12 11 42 42 H 1.09004 * 109.43267 * 174.72797 * 13 12 11 43 43 H 1.09007 * 109.45724 * 58.53102 * 14 13 12 44 44 H 0.96998 * 120.00140 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.49800 * 301.40932 * 23 14 13 46 46 H 1.09006 * 109.49768 * 181.31439 * 23 14 13 47 47 H 1.08996 * 109.59105 * 353.37060 * 24 11 9 48 48 H 1.08999 * 109.58914 * 113.66360 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8796 0.1264 6 1 3.6411 3.3449 1.0090 7 6 3.6814 3.6730 -1.1198 8 6 4.3860 3.0865 -2.3446 9 6 5.5811 2.8703 0.2571 10 8 6.1947 1.8321 0.1282 11 7 6.2420 4.0157 0.5174 12 6 5.5083 5.2682 0.7449 13 6 5.9668 5.8668 2.0833 14 6 7.4891 6.0240 2.0705 15 6 7.9404 6.6452 3.3672 16 1 8.6256 6.1137 4.0109 17 6 7.4784 7.8920 3.7318 18 7 6.6443 8.5394 2.9478 19 14 8.0373 8.6618 5.3394 20 1 8.9684 7.7366 6.0339 21 1 8.7308 9.9446 5.0594 22 1 6.8566 8.9157 6.2034 23 6 8.1440 4.6504 1.9080 24 6 7.7100 4.0368 0.5730 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 1.0081 -0.9305 33 1 3.9329 0.8533 0.8427 34 1 2.6018 3.6136 -1.2585 35 1 3.9750 4.7154 -0.9961 36 1 5.4615 3.0640 -2.1690 37 1 4.0253 2.0731 -2.5208 38 1 4.1732 3.7046 -3.2169 39 1 5.7205 5.9680 -0.0634 40 1 4.4384 5.0633 0.7820 41 1 5.6763 5.2050 2.8993 42 1 5.5014 6.8426 2.2226 43 1 7.7808 6.6660 1.2393 44 1 6.3196 9.4168 3.2041 45 1 7.8330 4.0001 2.7255 46 1 9.2284 4.7605 1.9224 47 1 8.0934 3.0194 0.4969 48 1 8.0984 4.6363 -0.2504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397241004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = -92.534556 kcal Electronic energy + Delta-G solvation = -23360.267387 eV Core-core repulsion = 20219.846584 eV Total energy + Delta-G solvation = -3140.420804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48181 -38.68702 -37.42715 -35.44462 -34.90136 -32.92016 -31.69001 -30.97377 -28.51089 -27.49924 -24.92219 -24.57163 -23.78191 -22.78825 -21.70047 -20.65522 -19.47311 -18.51024 -17.75732 -17.02214 -16.79745 -16.49958 -16.22007 -15.46060 -15.08424 -14.89348 -14.84058 -14.46549 -14.32327 -14.00824 -13.96295 -13.68264 -13.54662 -13.28702 -13.17630 -12.92282 -12.80957 -12.45025 -12.39250 -12.29848 -12.14742 -11.98682 -11.81990 -11.76443 -11.64228 -11.48248 -11.38570 -11.22105 -11.00010 -10.89397 -10.51818 -10.36909 -9.50696 -8.08165 -6.21151 1.39757 1.43227 1.53061 1.70188 2.13699 2.43912 3.18185 3.51754 3.76053 3.91860 4.05676 4.16624 4.22043 4.24999 4.30271 4.34382 4.43522 4.49071 4.53641 4.58010 4.61116 4.70027 4.75867 4.83987 4.88449 4.89209 4.94292 4.97735 5.07001 5.10208 5.17328 5.18995 5.23883 5.25655 5.29210 5.31356 5.43408 5.45814 5.50382 5.56516 5.60909 5.66639 5.98545 6.13506 6.39393 6.57166 6.87904 7.24243 7.46417 8.95319 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.003792 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.033663 B = 7382.114720 C = 7794.765116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.105 4.105 6 H 0.102 0.898 7 C -0.116 4.116 8 C -0.151 4.151 9 C 0.515 3.485 10 O -0.591 6.591 11 N -0.604 5.604 12 C 0.115 3.885 13 C -0.116 4.116 14 C 0.047 3.953 15 C -0.535 4.535 16 H 0.044 0.956 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.113 4.113 24 C 0.116 3.884 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.004 0.996 44 H 0.262 0.738 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 -10.375 -8.810 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.131 4.131 5 C -0.126 4.126 6 H 0.120 0.880 7 C -0.153 4.153 8 C -0.208 4.208 9 C 0.305 3.695 10 O -0.472 6.472 11 N -0.336 5.336 12 C -0.007 4.007 13 C -0.154 4.154 14 C 0.028 3.972 15 C -0.573 4.573 16 H 0.063 0.937 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.775 3.225 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.151 4.151 24 C -0.006 4.006 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.607 -10.734 -8.883 18.134 hybrid contribution 0.864 0.682 1.182 1.615 sum -10.743 -10.052 -7.701 16.606 Atomic orbital electron populations 1.21760 0.94981 1.01889 1.02127 1.21525 0.96498 0.96610 1.01740 1.21646 0.93171 0.97336 1.02960 1.21362 0.96287 0.93421 1.02070 1.21467 0.89627 0.99766 1.01732 0.87981 1.21678 1.02560 0.98989 0.92106 1.21798 0.99099 1.01651 0.98249 1.21235 0.91398 0.82177 0.74662 1.90600 1.70789 1.32335 1.53517 1.48279 1.07028 1.09414 1.68830 1.22087 0.96613 0.84131 0.97903 1.21882 0.98986 1.00455 0.94122 1.18595 0.92544 0.90948 0.95114 1.21558 1.27130 1.02343 1.06282 0.93725 1.25613 0.95198 0.97469 0.99750 1.69943 1.32868 1.14002 1.38113 0.85659 0.78173 0.78271 0.80441 1.19886 1.20624 1.20495 1.21843 0.99971 0.97735 0.95544 1.21536 0.80184 1.01139 0.97761 0.92149 0.92488 0.92675 0.92122 0.92813 0.91583 0.90330 0.91810 0.93507 0.88014 0.90951 0.95467 0.91948 0.91101 0.91509 0.88009 0.95514 0.90095 0.97811 0.92877 0.94271 0.92043 0.90563 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.11 -1.91 4.85 30.59 0.15 -1.77 16 4 C -0.09 -2.15 3.85 30.59 0.12 -2.03 16 5 C -0.10 -2.60 1.65 -11.54 -0.02 -2.62 16 6 H 0.10 2.39 7.19 -2.39 -0.02 2.38 16 7 C -0.12 -2.32 5.21 30.59 0.16 -2.16 16 8 C -0.15 -3.23 9.33 71.98 0.67 -2.56 16 9 C 0.51 17.37 5.44 87.66 0.48 17.85 16 10 O -0.59 -23.65 15.41 -3.01 -0.05 -23.69 16 11 N -0.60 -21.19 2.97 -818.07 -2.43 -23.62 16 12 C 0.11 3.89 5.08 86.50 0.44 4.33 16 13 C -0.12 -5.08 5.17 30.81 0.16 -4.92 16 14 C 0.05 2.24 2.06 -11.52 -0.02 2.22 16 15 C -0.54 -28.97 8.56 25.60 0.22 -28.75 16 16 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 17 C 0.02 1.01 5.30 84.66 0.45 1.46 16 18 N -0.91 -49.73 11.31 21.45 0.24 -49.48 16 19 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 24 C 0.12 4.31 6.44 86.36 0.56 4.87 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.11 6.72 -2.39 -0.02 1.10 16 32 H 0.06 1.56 6.42 -2.38 -0.02 1.54 16 33 H 0.05 1.25 8.05 -2.39 -0.02 1.24 16 34 H 0.10 1.51 6.49 -2.38 -0.02 1.50 16 35 H 0.07 1.50 5.87 -2.39 -0.01 1.48 16 36 H 0.03 0.73 6.90 -2.39 -0.02 0.71 16 37 H 0.06 1.26 6.68 -2.39 -0.02 1.24 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 2.83 4.85 -2.39 -0.01 2.81 16 41 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 3.95 6.03 -2.38 -0.01 3.94 16 43 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 47 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 48 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -61.38 358.72 5.11 -56.27 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.90 Total: 17.49 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.41 Total: -21.76 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -2.18 Total: -73.10 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.38 5.11 -56.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397241004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.264 kcal (2) G-P(sol) polarization free energy of solvation -61.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds