Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.53009 * 109.47132 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47132 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47313 * 305.00390 * 5 4 3 7 7 C 1.53000 * 109.47140 * 65.00210 * 5 4 3 8 8 C 1.52998 * 109.47238 * 185.43809 * 7 5 4 9 9 C 1.50700 * 109.47368 * 185.00491 * 5 4 3 10 10 O 1.21284 * 119.99715 * 274.02354 * 9 5 4 11 11 N 1.34770 * 120.00294 * 94.01365 * 9 5 4 12 12 C 1.46928 * 120.62868 * 354.51017 * 11 9 5 13 13 C 1.53627 * 108.54102 * 126.36550 * 12 11 9 14 14 C 1.53036 * 109.24405 * 54.85967 * 13 12 11 15 15 C 1.50705 * 109.44945 * 178.49838 * 14 13 12 16 16 H 1.07995 * 120.00135 * 120.06147 * 15 14 13 17 17 C 1.37877 * 119.99702 * 300.05306 * 15 14 13 18 18 N 1.31517 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46802 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46846 * 119.99998 * 19 17 15 22 22 H 1.48497 * 109.47210 * 240.00438 * 19 17 15 23 23 C 1.53046 * 109.53394 * 298.50533 * 14 13 12 24 24 C 1.46928 * 120.63402 * 174.78160 * 11 9 5 25 25 H 1.09000 * 109.46851 * 59.99844 * 1 2 3 26 26 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46965 * 300.00058 * 1 2 3 28 28 H 1.09000 * 109.47380 * 239.99674 * 2 1 3 29 29 H 1.09000 * 109.46851 * 120.00156 * 2 1 3 30 30 H 1.09005 * 109.47005 * 60.00265 * 3 2 1 31 31 H 1.09000 * 109.47303 * 299.99879 * 3 2 1 32 32 H 1.09005 * 109.46589 * 60.00464 * 4 3 2 33 33 H 1.09000 * 109.47298 * 300.00336 * 4 3 2 34 34 H 1.09008 * 109.46881 * 65.43988 * 7 5 4 35 35 H 1.08995 * 109.47177 * 305.44065 * 7 5 4 36 36 H 1.08995 * 109.47449 * 294.97991 * 8 7 5 37 37 H 1.08999 * 109.47042 * 54.98385 * 8 7 5 38 38 H 1.09006 * 109.47172 * 174.97647 * 8 7 5 39 39 H 1.09003 * 109.58475 * 246.19275 * 12 11 9 40 40 H 1.08997 * 109.58831 * 6.62045 * 12 11 9 41 41 H 1.08990 * 109.63597 * 294.85782 * 13 12 11 42 42 H 1.09010 * 109.43063 * 174.72266 * 13 12 11 43 43 H 1.08994 * 109.46789 * 58.52590 * 14 13 12 44 44 H 0.97000 * 119.99954 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.49891 * 301.41626 * 23 14 13 46 46 H 1.09000 * 109.52511 * 181.33435 * 23 14 13 47 47 H 1.08999 * 109.58342 * 353.38056 * 24 11 9 48 48 H 1.09003 * 109.58190 * 113.65818 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6459 3.4234 -0.8423 7 6 3.6749 3.5696 1.3068 8 6 4.0652 5.0479 1.2503 9 6 5.5821 2.8866 -0.1233 10 8 6.2721 2.7838 0.8688 11 7 6.1586 3.0022 -1.3360 12 6 5.3404 3.0067 -2.5564 13 6 5.6891 4.2599 -3.3737 14 6 7.1977 4.2922 -3.6288 15 6 7.5400 5.5006 -4.4617 16 1 8.2196 6.2466 -4.0771 17 6 6.9857 5.6536 -5.7148 18 7 6.1578 4.7452 -6.1830 19 14 7.4105 7.1510 -6.7476 20 1 8.3565 8.0167 -5.9986 21 1 8.0403 6.7128 -8.0190 22 1 6.1721 7.9141 -7.0459 23 6 7.9410 4.3665 -2.2930 24 6 7.6176 3.1202 -1.4632 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9331 0.9286 0.8908 34 1 4.1862 3.0905 2.1418 35 1 2.5970 3.4834 1.4431 36 1 5.1507 5.1356 1.2037 37 1 3.6253 5.5062 0.3646 38 1 3.6976 5.5551 2.1424 39 1 5.5545 2.1133 -3.1431 40 1 4.2841 3.0258 -2.2881 41 1 5.3944 5.1516 -2.8205 42 1 5.1596 4.2307 -4.3261 43 1 7.4956 3.3885 -4.1603 44 1 5.7675 4.8530 -7.0644 45 1 7.6252 5.2573 -1.7499 46 1 9.0146 4.4134 -2.4757 47 1 8.0642 3.2142 -0.4734 48 1 8.0137 2.2346 -1.9603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397241005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -80.693204 kcal Electronic energy + Delta-G solvation = -23394.798431 eV Core-core repulsion = 20254.891107 eV Total energy + Delta-G solvation = -3139.907324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02120 -37.19606 -36.25618 -33.98385 -33.48690 -31.32890 -30.48304 -30.01676 -27.10971 -25.92353 -23.33653 -22.89808 -22.45626 -21.67813 -20.84865 -19.33514 -18.10469 -17.15181 -16.20121 -15.62137 -15.38856 -14.96235 -14.55725 -14.07837 -13.90980 -13.81377 -13.57331 -13.10745 -13.06981 -12.73717 -12.66559 -12.54032 -12.21243 -12.04674 -11.68537 -11.51878 -11.34141 -11.27143 -11.19453 -11.01483 -10.95400 -10.67284 -10.64364 -10.53473 -10.39563 -10.32124 -10.09682 -9.65163 -9.22733 -9.17590 -8.87666 -8.39525 -7.96034 -6.04706 -4.10729 3.04220 3.25937 3.34597 3.38739 3.52338 4.39653 4.62372 4.70040 4.83431 4.95497 5.05424 5.16522 5.24200 5.29150 5.33453 5.48816 5.56943 5.64277 5.66911 5.71042 5.77693 5.83300 5.85438 5.91552 5.94413 5.97549 6.07092 6.08235 6.11837 6.16660 6.21762 6.25230 6.31791 6.38174 6.42811 6.46939 6.66453 6.90408 7.04048 7.15732 7.27818 7.65636 7.90792 7.98218 8.03288 8.38954 8.64036 8.92962 9.54533 11.00735 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.004233 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.560937 B = 6613.578844 C = 7277.858407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.106 4.106 8 C -0.155 4.155 9 C 0.518 3.482 10 O -0.560 6.560 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.027 0.973 44 H 0.260 0.740 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -6.623 10.670 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.145 4.145 5 C -0.132 4.132 6 H 0.112 0.888 7 C -0.144 4.144 8 C -0.212 4.212 9 C 0.306 3.694 10 O -0.440 6.440 11 N -0.332 5.332 12 C -0.022 4.022 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.109 -6.708 11.009 15.785 hybrid contribution 0.203 0.864 -0.862 1.237 sum -8.906 -5.844 10.148 14.712 Atomic orbital electron populations 1.21774 0.96007 1.01403 1.01795 1.21532 0.95701 0.97025 1.02046 1.21680 0.94797 0.96789 1.02436 1.21495 0.95668 0.94522 1.02782 1.21479 0.92832 0.98297 1.00611 0.88775 1.21445 1.00731 0.95776 0.96457 1.21797 1.02196 0.95851 1.01352 1.20508 0.90265 0.75811 0.82787 1.90610 1.65079 1.51396 1.36915 1.48263 1.07931 1.70742 1.06241 1.22193 0.93773 1.01138 0.85089 1.22091 1.01296 0.92902 0.99896 1.18632 0.90701 0.97472 0.90181 1.21248 1.26713 1.06703 1.00226 0.92687 1.24956 0.95079 0.96283 0.97638 1.69847 1.30906 1.34266 1.18075 0.86570 0.78240 0.83116 0.80291 1.19843 1.21046 1.21060 1.22000 1.00387 0.95433 0.98250 1.21669 0.79615 0.99034 1.00739 0.92679 0.92978 0.92862 0.91966 0.92144 0.91568 0.91673 0.91551 0.91358 0.90958 0.91348 0.92405 0.92744 0.92850 0.92007 0.91151 0.94252 0.87851 0.95503 0.93051 0.93037 0.92230 0.90547 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.14 4.98 -26.73 -0.13 -1.27 16 4 C -0.11 -1.24 4.66 -26.73 -0.12 -1.37 16 5 C -0.11 -1.51 1.47 -91.77 -0.14 -1.64 16 6 H 0.09 1.26 5.98 -51.93 -0.31 0.95 16 7 C -0.11 -1.33 5.03 -26.73 -0.13 -1.47 16 8 C -0.15 -2.04 9.65 37.16 0.36 -1.68 16 9 C 0.52 9.01 5.85 -10.99 -0.06 8.94 16 10 O -0.56 -11.27 15.35 5.55 0.09 -11.18 16 11 N -0.60 -10.83 2.97 -172.50 -0.51 -11.34 16 12 C 0.10 1.77 6.33 -3.48 -0.02 1.75 16 13 C -0.12 -2.68 5.17 -26.39 -0.14 -2.82 16 14 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 15 C -0.51 -13.54 8.56 -34.44 -0.29 -13.84 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -24.24 11.30 55.43 0.63 -23.61 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.12 -2.52 5.30 -26.61 -0.14 -2.67 16 24 C 0.11 2.08 6.41 -3.71 -0.02 2.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.59 6.45 -51.93 -0.34 0.26 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.99 7.66 -51.92 -0.40 0.59 16 35 H 0.07 0.70 6.33 -51.93 -0.33 0.38 16 36 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.07 5.35 -51.93 -0.28 0.79 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 2.50 6.03 -51.92 -0.31 2.19 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -28.36 365.65 -9.25 -37.61 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.02 Total: 0.85 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.93 Total: -13.56 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.11 Total: -34.95 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.36 -9.25 -37.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397241005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.082 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds