Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47405 * 2 1 4 4 C 1.53001 * 109.47143 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47192 * 185.14869 * 4 3 2 6 6 H 1.08999 * 109.47627 * 55.38215 * 5 4 3 7 7 C 1.53001 * 109.46988 * 295.38685 * 5 4 3 8 8 C 1.53003 * 109.47205 * 304.67415 * 7 5 4 9 9 C 1.50697 * 109.47309 * 175.38910 * 5 4 3 10 10 O 1.21282 * 119.99831 * 15.33332 * 9 5 4 11 11 N 1.34778 * 120.00289 * 195.33347 * 9 5 4 12 12 C 1.46927 * 120.62579 * 354.16902 * 11 9 5 13 13 C 1.53193 * 108.77342 * 233.58540 * 12 11 9 14 14 C 1.53041 * 109.31410 * 305.36843 * 13 12 11 15 15 C 1.53036 * 109.53793 * 61.36425 * 14 13 12 16 16 H 1.09011 * 109.49661 * 58.62149 * 15 14 13 17 17 C 1.50698 * 109.49852 * 178.67981 * 15 14 13 18 18 H 1.08000 * 119.99823 * 119.99878 * 17 15 14 19 19 C 1.37871 * 120.00374 * 299.73167 * 17 15 14 20 20 N 1.31515 * 120.00402 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00078 * 359.97438 * 19 17 15 22 22 H 1.48501 * 109.47099 * 89.99874 * 21 19 17 23 23 H 1.48502 * 109.47555 * 210.00399 * 21 19 17 24 24 H 1.48504 * 109.47159 * 330.00358 * 21 19 17 25 25 C 1.46919 * 120.63217 * 174.14917 * 11 9 5 26 26 H 1.08999 * 109.46977 * 59.99546 * 1 2 3 27 27 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46656 * 299.99944 * 1 2 3 29 29 H 1.08998 * 109.47173 * 239.99960 * 2 1 3 30 30 H 1.08999 * 109.46977 * 120.00454 * 2 1 3 31 31 H 1.09010 * 109.46859 * 60.00533 * 3 2 1 32 32 H 1.08999 * 109.47424 * 300.00180 * 3 2 1 33 33 H 1.08998 * 109.47114 * 65.14341 * 4 3 2 34 34 H 1.09006 * 109.47127 * 305.14424 * 4 3 2 35 35 H 1.09002 * 109.47034 * 64.67089 * 7 5 4 36 36 H 1.09000 * 109.47547 * 184.67083 * 7 5 4 37 37 H 1.09002 * 109.47108 * 185.60482 * 8 7 5 38 38 H 1.09007 * 109.47005 * 305.60217 * 8 7 5 39 39 H 1.09000 * 109.47281 * 65.60494 * 8 7 5 40 40 H 1.08998 * 109.58239 * 113.80588 * 12 11 9 41 41 H 1.08999 * 109.59202 * 353.37271 * 12 11 9 42 42 H 1.09004 * 109.49987 * 185.41860 * 13 12 11 43 43 H 1.08997 * 109.52471 * 65.33815 * 13 12 11 44 44 H 1.09001 * 109.46231 * 301.34490 * 14 13 12 45 45 H 1.09002 * 109.45788 * 181.38707 * 14 13 12 46 46 H 0.96999 * 120.00687 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.58744 * 6.62485 * 25 11 9 48 48 H 1.09004 * 109.58911 * 246.20184 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8790 0.1301 6 1 3.6505 3.3383 1.0203 7 6 3.6676 3.6800 -1.1065 8 6 4.1724 2.9712 -2.3650 9 6 5.5827 2.8703 0.2446 10 8 6.2075 1.8732 -0.0494 11 7 6.2323 3.9704 0.6738 12 6 5.5044 5.2243 0.9118 13 6 6.1842 6.3467 0.1212 14 6 7.6678 6.4008 0.4928 15 6 8.3369 5.0753 0.1222 16 1 8.2164 4.8930 -0.9458 17 6 9.8044 5.1413 0.4586 18 1 10.2288 4.4415 1.1633 19 6 10.6063 6.0914 -0.1372 20 7 11.8868 6.1493 0.1567 21 14 9.8739 7.2966 -1.3622 22 1 9.4000 8.5065 -0.6434 23 1 10.9084 7.6839 -2.3547 24 1 8.7309 6.6575 -2.0625 25 6 7.6816 3.9385 0.9128 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6768 1.9563 -0.8899 33 1 3.9338 1.0102 -0.9316 34 1 3.9331 0.8509 0.8413 35 1 2.5809 3.7566 -1.1439 36 1 4.1007 4.6789 -1.0536 37 1 3.9662 3.5903 -3.2381 38 1 5.2466 2.8056 -2.2826 39 1 3.6640 2.0129 -2.4709 40 1 5.5249 5.4624 1.9753 41 1 4.4721 5.1165 0.5791 42 1 5.7134 7.2994 0.3639 43 1 6.0834 6.1527 -0.9467 44 1 7.7677 6.5708 1.5648 45 1 8.1486 7.2146 -0.0501 46 1 12.4509 6.8180 -0.2622 47 1 8.0858 2.9822 0.5807 48 1 7.8796 4.0717 1.9764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397565741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = -88.476596 kcal Electronic energy + Delta-G solvation = -23549.640606 eV Core-core repulsion = 20409.395769 eV Total energy + Delta-G solvation = -3140.244837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51610 -38.85749 -37.46209 -35.48905 -34.80910 -33.44878 -32.20320 -30.90321 -28.51907 -26.86664 -26.22971 -24.50091 -23.19709 -22.90385 -21.73435 -20.82130 -19.44833 -18.80581 -18.02516 -16.95687 -16.88293 -16.72711 -16.13060 -15.49698 -15.27939 -15.21954 -14.91555 -14.51521 -14.45445 -14.10032 -14.04871 -13.93295 -13.66454 -13.43448 -13.18719 -12.96865 -12.82279 -12.45401 -12.35196 -12.27014 -12.10145 -11.92731 -11.81875 -11.75555 -11.64856 -11.51134 -11.38637 -11.27119 -11.22695 -11.06592 -10.70481 -10.46290 -9.50680 -8.33908 -6.39089 1.25492 1.33648 1.43842 1.70182 2.12151 2.29069 3.00893 3.51734 3.75722 3.91686 3.98228 4.05314 4.16281 4.18878 4.22834 4.30622 4.32287 4.41808 4.48934 4.55768 4.60896 4.66574 4.72285 4.74951 4.85028 4.89006 4.90597 4.94171 4.97692 5.07010 5.08577 5.12684 5.14767 5.17284 5.26315 5.29758 5.31711 5.38572 5.44157 5.47818 5.51590 5.61437 5.64771 5.75016 6.23776 6.58379 6.67278 7.24990 7.28570 8.82938 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032820 B = 0.003943 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.926692 B = 7099.294913 C = 7306.921670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.110 4.110 4 C -0.099 4.099 5 C -0.098 4.098 6 H 0.121 0.879 7 C -0.115 4.115 8 C -0.156 4.156 9 C 0.507 3.493 10 O -0.595 6.595 11 N -0.611 5.611 12 C 0.102 3.898 13 C -0.133 4.133 14 C -0.122 4.122 15 C 0.010 3.990 16 H 0.010 0.990 17 C -0.523 4.523 18 H 0.031 0.969 19 C 0.012 3.988 20 N -0.949 5.949 21 Si 0.956 3.044 22 H -0.255 1.255 23 H -0.301 1.301 24 H -0.254 1.254 25 C 0.138 3.862 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.267 0.733 47 H 0.050 0.950 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.479 -2.263 -0.703 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.119 4.119 6 H 0.139 0.861 7 C -0.152 4.152 8 C -0.214 4.214 9 C 0.298 3.702 10 O -0.476 6.476 11 N -0.343 5.343 12 C -0.019 4.019 13 C -0.171 4.171 14 C -0.159 4.159 15 C -0.009 4.009 16 H 0.028 0.972 17 C -0.562 4.562 18 H 0.050 0.950 19 C -0.185 4.185 20 N -0.589 5.589 21 Si 0.782 3.218 22 H -0.180 1.180 23 H -0.229 1.229 24 H -0.178 1.178 25 C 0.015 3.985 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.003 -2.697 -0.864 27.151 hybrid contribution 1.414 0.194 -0.433 1.492 sum -25.589 -2.503 -1.297 25.744 Atomic orbital electron populations 1.21752 0.94841 1.01807 1.02265 1.21542 0.96599 0.96969 1.01521 1.21613 0.92687 0.97094 1.03321 1.21425 0.96658 0.93782 1.01859 1.21486 0.88488 0.99642 1.02297 0.86104 1.21690 1.03460 0.98348 0.91697 1.21847 0.99576 1.01430 0.98505 1.21558 0.91846 0.81801 0.75039 1.90642 1.70486 1.35146 1.51305 1.48389 1.08227 1.12066 1.65620 1.22146 0.96835 0.81764 1.01185 1.21995 0.94816 1.00098 1.00208 1.21855 0.95672 0.97155 1.01223 1.19317 0.93244 0.93359 0.95022 0.97234 1.21242 0.93350 1.16039 1.25536 0.95031 1.25891 0.94882 0.99449 0.98265 1.70050 1.06615 1.36787 1.45422 0.85739 0.77752 0.79655 0.78624 1.18012 1.22911 1.17823 1.21268 0.79519 0.98776 0.98963 0.92226 0.92792 0.92205 0.92790 0.92758 0.90584 0.90407 0.92556 0.93529 0.87141 0.90652 0.91468 0.96319 0.91625 0.89743 0.85969 0.87626 0.92502 0.91736 0.94504 0.92440 0.93157 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.11 -1.51 4.83 30.59 0.15 -1.36 16 4 C -0.10 -2.09 3.69 30.59 0.11 -1.98 16 5 C -0.10 -2.06 1.65 -11.54 -0.02 -2.08 16 6 H 0.12 1.83 7.38 -2.39 -0.02 1.81 16 7 C -0.11 -1.96 4.91 30.60 0.15 -1.81 16 8 C -0.16 -3.44 9.14 71.98 0.66 -2.79 16 9 C 0.51 16.79 5.87 87.66 0.51 17.31 16 10 O -0.59 -25.60 15.30 -3.04 -0.05 -25.65 16 11 N -0.61 -20.37 2.97 -818.91 -2.43 -22.81 16 12 C 0.10 2.38 5.61 86.36 0.48 2.86 16 13 C -0.13 -3.61 6.08 30.67 0.19 -3.42 16 14 C -0.12 -4.72 4.66 30.62 0.14 -4.58 16 15 C 0.01 0.48 1.84 -11.46 -0.02 0.46 16 16 H 0.01 0.49 7.19 -2.38 -0.02 0.47 16 17 C -0.52 -30.65 9.14 25.60 0.23 -30.42 16 18 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 19 C 0.01 0.73 5.45 84.65 0.46 1.19 16 20 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 21 Si 0.96 45.47 24.40 68.60 1.67 47.14 16 22 H -0.25 -11.08 6.86 99.48 0.68 -10.40 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 25 C 0.14 5.94 5.66 86.36 0.49 6.43 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 0.89 6.92 -2.39 -0.02 0.87 16 33 H 0.06 1.41 6.15 -2.39 -0.01 1.39 16 34 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.11 1.15 6.91 -2.39 -0.02 1.13 16 36 H 0.07 1.27 5.98 -2.39 -0.01 1.25 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.02 0.55 7.04 -2.38 -0.02 0.54 16 39 H 0.06 1.33 6.59 -2.39 -0.02 1.31 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.12 1.90 4.35 -2.39 -0.01 1.89 16 42 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.52 3.29 -2.39 -0.01 1.51 16 46 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.05 2.48 7.00 -2.38 -0.02 2.46 16 48 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -75.16 352.46 4.76 -70.41 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.83 Total: 13.74 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.44 Total: -22.79 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.13 Total: -82.85 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -75.16 4.76 -70.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.070 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds