Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.53003 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46836 * 185.06513 * 4 3 2 6 6 H 1.08999 * 109.47347 * 56.05460 * 5 4 3 7 7 C 1.52995 * 109.47243 * 296.04947 * 5 4 3 8 8 C 1.52995 * 109.47302 * 304.01206 * 7 5 4 9 9 C 1.50708 * 109.47034 * 176.05445 * 5 4 3 10 10 O 1.21288 * 119.99903 * 7.04754 * 9 5 4 11 11 N 1.34775 * 119.99916 * 187.05776 * 9 5 4 12 12 C 1.46919 * 120.63382 * 4.91592 * 11 9 5 13 13 C 1.53190 * 108.77552 * 126.37330 * 12 11 9 14 14 C 1.53039 * 109.31423 * 54.63522 * 13 12 11 15 15 C 1.53041 * 109.53797 * 298.63891 * 14 13 12 16 16 H 1.09009 * 109.49276 * 301.37735 * 15 14 13 17 17 C 1.50700 * 109.49644 * 181.31544 * 15 14 13 18 18 H 1.07999 * 119.99615 * 239.99613 * 17 15 14 19 19 C 1.37878 * 120.00042 * 59.99913 * 17 15 14 20 20 N 1.31518 * 119.99931 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99973 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47013 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47372 * 119.99957 * 21 19 17 24 24 H 1.48505 * 109.46822 * 240.00059 * 21 19 17 25 25 C 1.46922 * 120.62754 * 184.64303 * 11 9 5 26 26 H 1.08995 * 109.47152 * 299.99964 * 1 2 3 27 27 H 1.09007 * 109.46684 * 60.00242 * 1 2 3 28 28 H 1.08999 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46921 * 240.00487 * 2 1 3 30 30 H 1.08998 * 109.47430 * 119.99971 * 2 1 3 31 31 H 1.08995 * 109.47199 * 60.00064 * 3 2 1 32 32 H 1.08998 * 109.47525 * 299.99924 * 3 2 1 33 33 H 1.08998 * 109.47229 * 65.06568 * 4 3 2 34 34 H 1.08998 * 109.47194 * 305.06058 * 4 3 2 35 35 H 1.09001 * 109.47464 * 184.00855 * 7 5 4 36 36 H 1.09000 * 109.47004 * 64.01531 * 7 5 4 37 37 H 1.09000 * 109.47178 * 175.80081 * 8 7 5 38 38 H 1.08999 * 109.47295 * 55.80423 * 8 7 5 39 39 H 1.09000 * 109.47536 * 295.80163 * 8 7 5 40 40 H 1.08998 * 109.59336 * 246.15947 * 12 11 9 41 41 H 1.09006 * 109.58422 * 6.44357 * 12 11 9 42 42 H 1.09003 * 109.49970 * 174.58978 * 13 12 11 43 43 H 1.09009 * 109.49535 * 294.68339 * 13 12 11 44 44 H 1.09000 * 109.45406 * 58.65554 * 14 13 12 45 45 H 1.08999 * 109.45679 * 178.62745 * 14 13 12 46 46 H 0.97001 * 119.99722 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.59083 * 353.41438 * 25 11 9 48 48 H 1.09004 * 109.59184 * 113.83900 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8795 0.1280 6 1 3.6596 3.3361 1.0241 7 6 3.6532 3.6830 -1.1021 8 6 4.1591 2.9866 -2.3669 9 6 5.5837 2.8720 0.2261 10 8 6.1966 1.8372 0.0692 11 7 6.2476 4.0152 0.4884 12 6 5.5162 5.2539 0.7871 13 6 6.0281 5.8207 2.1151 14 6 7.5473 5.9901 2.0411 15 6 8.2037 4.6266 1.8128 16 1 7.9331 3.9520 2.6251 17 6 9.7013 4.7899 1.7724 18 1 10.2517 4.5059 0.8876 19 6 10.3688 5.3017 2.8649 20 7 9.6983 5.6479 3.9421 21 14 12.2250 5.5047 2.8145 22 1 12.7376 5.0456 1.4986 23 1 12.5720 6.9353 3.0098 24 1 12.8411 4.6939 3.8954 25 6 7.7165 4.0450 0.4869 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 1.0092 -0.9310 34 1 3.9330 0.8523 0.8421 35 1 4.0761 4.6860 -1.0456 36 1 2.5656 3.7486 -1.1337 37 1 3.7924 3.5174 -3.2454 38 1 3.7964 1.9589 -2.3857 39 1 5.2491 2.9872 -2.3707 40 1 5.6851 5.9791 -0.0089 41 1 4.4504 5.0391 0.8656 42 1 5.5627 6.7888 2.3010 43 1 5.7774 5.1346 2.9242 44 1 7.7985 6.6568 1.2162 45 1 7.9111 6.4161 2.9761 46 1 10.1680 6.0076 4.7109 47 1 8.1025 3.0324 0.3700 48 1 8.0686 4.6695 -0.3342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397565743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -77.824655 kcal Electronic energy + Delta-G solvation = -23359.549578 eV Core-core repulsion = 20219.766644 eV Total energy + Delta-G solvation = -3139.782934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06140 -37.28562 -36.21721 -34.25291 -33.30777 -31.28239 -30.24465 -30.02745 -27.23727 -25.09046 -24.47458 -23.63250 -21.86445 -21.64197 -20.61222 -19.14988 -18.08137 -16.66269 -16.29269 -15.89605 -15.44731 -15.12276 -14.60633 -14.22587 -13.88385 -13.60454 -13.49528 -13.17831 -13.11277 -12.71571 -12.66558 -12.50916 -12.32009 -12.04467 -11.93027 -11.50253 -11.43641 -11.07531 -11.00886 -10.94367 -10.85455 -10.76412 -10.68914 -10.52389 -10.38699 -10.23736 -9.93770 -9.77493 -9.42882 -9.12162 -8.78293 -8.38268 -7.84498 -6.01574 -4.08532 3.13428 3.28775 3.36918 3.41044 3.59491 4.42810 4.61890 4.70625 4.82824 4.97441 5.01093 5.04996 5.23885 5.29332 5.30510 5.38437 5.46924 5.59796 5.62599 5.65689 5.68940 5.73919 5.79232 5.81917 5.88513 5.96409 5.98039 6.10040 6.13007 6.16524 6.23947 6.32003 6.34447 6.43299 6.49531 6.52363 6.68128 6.83907 7.02295 7.18795 7.35176 7.69947 7.93708 8.07467 8.09340 8.38732 8.73168 8.95682 9.56359 11.03935 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.003590 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.605222 B = 7797.018831 C = 7857.607677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.108 4.108 6 H 0.091 0.909 7 C -0.117 4.117 8 C -0.156 4.156 9 C 0.515 3.485 10 O -0.551 6.551 11 N -0.603 5.603 12 C 0.109 3.891 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.259 0.741 47 H 0.077 0.923 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 -3.052 -7.992 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.130 4.130 6 H 0.109 0.891 7 C -0.154 4.154 8 C -0.213 4.213 9 C 0.302 3.698 10 O -0.430 6.430 11 N -0.335 5.335 12 C -0.014 4.014 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.551 4.551 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.004 4.004 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.883 -3.519 -7.907 18.972 hybrid contribution 1.033 0.355 0.198 1.110 sum -15.850 -3.164 -7.709 17.907 Atomic orbital electron populations 1.21778 0.96141 1.01362 1.01650 1.21530 0.95488 0.97155 1.02144 1.21670 0.95468 0.96624 1.01943 1.21471 0.94337 0.94643 1.03584 1.21379 0.93075 0.98479 1.00048 0.89118 1.21585 1.01105 0.99079 0.93669 1.21860 1.01753 1.00862 0.96814 1.20484 0.89554 0.83284 0.76452 1.90647 1.69806 1.31235 1.51310 1.48267 1.08310 1.08844 1.68069 1.21798 0.95317 0.86270 0.98052 1.22017 1.00125 0.99500 0.95764 1.21623 0.90069 0.99991 1.03315 1.18889 0.94887 0.92935 0.91258 0.95361 1.21122 0.91453 1.42105 1.00433 0.92470 1.24943 0.98272 0.95305 0.95351 1.69886 1.35142 1.43492 1.04272 0.86529 0.85683 0.77648 0.78108 1.19735 1.21048 1.21029 1.21868 0.76257 1.01877 1.00365 0.92830 0.92896 0.92999 0.92076 0.92002 0.92124 0.91849 0.90742 0.91451 0.91182 0.91081 0.92900 0.92000 0.92564 0.92107 0.90934 0.92520 0.92433 0.94633 0.88665 0.93058 0.90416 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.12 4.82 -26.73 -0.13 -1.25 16 4 C -0.10 -1.26 3.66 -26.73 -0.10 -1.36 16 5 C -0.11 -1.42 1.67 -91.77 -0.15 -1.57 16 6 H 0.09 1.09 7.09 -51.93 -0.37 0.73 16 7 C -0.12 -1.27 4.98 -26.74 -0.13 -1.40 16 8 C -0.16 -1.78 9.32 37.15 0.35 -1.43 16 9 C 0.51 9.26 5.99 -10.98 -0.07 9.20 16 10 O -0.55 -11.95 15.42 5.55 0.09 -11.87 16 11 N -0.60 -11.18 2.98 -173.04 -0.52 -11.69 16 12 C 0.11 1.68 4.94 -3.72 -0.02 1.66 16 13 C -0.14 -2.42 6.08 -26.61 -0.16 -2.58 16 14 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 0.98 2.24 -91.87 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 17 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.57 5.64 -3.94 -0.02 2.55 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.55 6.89 -51.93 -0.36 0.19 16 33 H 0.07 0.98 6.02 -51.93 -0.31 0.66 16 34 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.07 0.77 6.04 -51.93 -0.31 0.45 16 36 H 0.07 0.63 6.85 -51.93 -0.36 0.27 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 6.04 -51.93 -0.31 0.37 16 39 H 0.06 0.78 7.49 -51.93 -0.39 0.39 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.91 5.07 -51.93 -0.26 0.64 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 47 H 0.08 1.85 7.00 -51.93 -0.36 1.48 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -29.74 359.08 -9.17 -38.91 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.81 Total: 0.28 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.95 Total: -12.79 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.11 Total: -36.16 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.74 -9.17 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.912 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds