Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.53003 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46836 * 185.06513 * 4 3 2 6 6 H 1.08999 * 109.47347 * 56.05460 * 5 4 3 7 7 C 1.52995 * 109.47243 * 296.04947 * 5 4 3 8 8 C 1.52995 * 109.47302 * 304.01206 * 7 5 4 9 9 C 1.50708 * 109.47034 * 176.05445 * 5 4 3 10 10 O 1.21288 * 119.99903 * 7.04754 * 9 5 4 11 11 N 1.34775 * 119.99916 * 187.05776 * 9 5 4 12 12 C 1.46919 * 120.63382 * 4.91592 * 11 9 5 13 13 C 1.53190 * 108.77552 * 126.37330 * 12 11 9 14 14 C 1.53039 * 109.31423 * 54.63522 * 13 12 11 15 15 C 1.53041 * 109.53797 * 298.63891 * 14 13 12 16 16 H 1.09009 * 109.49276 * 301.37735 * 15 14 13 17 17 C 1.50700 * 109.49644 * 181.31544 * 15 14 13 18 18 H 1.07999 * 119.99615 * 239.99613 * 17 15 14 19 19 C 1.37878 * 120.00042 * 59.99913 * 17 15 14 20 20 N 1.31518 * 119.99931 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99973 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47013 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47372 * 119.99957 * 21 19 17 24 24 H 1.48505 * 109.46822 * 240.00059 * 21 19 17 25 25 C 1.46922 * 120.62754 * 184.64303 * 11 9 5 26 26 H 1.08995 * 109.47152 * 299.99964 * 1 2 3 27 27 H 1.09007 * 109.46684 * 60.00242 * 1 2 3 28 28 H 1.08999 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46921 * 240.00487 * 2 1 3 30 30 H 1.08998 * 109.47430 * 119.99971 * 2 1 3 31 31 H 1.08995 * 109.47199 * 60.00064 * 3 2 1 32 32 H 1.08998 * 109.47525 * 299.99924 * 3 2 1 33 33 H 1.08998 * 109.47229 * 65.06568 * 4 3 2 34 34 H 1.08998 * 109.47194 * 305.06058 * 4 3 2 35 35 H 1.09001 * 109.47464 * 184.00855 * 7 5 4 36 36 H 1.09000 * 109.47004 * 64.01531 * 7 5 4 37 37 H 1.09000 * 109.47178 * 175.80081 * 8 7 5 38 38 H 1.08999 * 109.47295 * 55.80423 * 8 7 5 39 39 H 1.09000 * 109.47536 * 295.80163 * 8 7 5 40 40 H 1.08998 * 109.59336 * 246.15947 * 12 11 9 41 41 H 1.09006 * 109.58422 * 6.44357 * 12 11 9 42 42 H 1.09003 * 109.49970 * 174.58978 * 13 12 11 43 43 H 1.09009 * 109.49535 * 294.68339 * 13 12 11 44 44 H 1.09000 * 109.45406 * 58.65554 * 14 13 12 45 45 H 1.08999 * 109.45679 * 178.62745 * 14 13 12 46 46 H 0.97001 * 119.99722 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.59083 * 353.41438 * 25 11 9 48 48 H 1.09004 * 109.59184 * 113.83900 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8795 0.1280 6 1 3.6596 3.3361 1.0241 7 6 3.6532 3.6830 -1.1021 8 6 4.1591 2.9866 -2.3669 9 6 5.5837 2.8720 0.2261 10 8 6.1966 1.8372 0.0692 11 7 6.2476 4.0152 0.4884 12 6 5.5162 5.2539 0.7871 13 6 6.0281 5.8207 2.1151 14 6 7.5473 5.9901 2.0411 15 6 8.2037 4.6266 1.8128 16 1 7.9331 3.9520 2.6251 17 6 9.7013 4.7899 1.7724 18 1 10.2517 4.5059 0.8876 19 6 10.3688 5.3017 2.8649 20 7 9.6983 5.6479 3.9421 21 14 12.2250 5.5047 2.8145 22 1 12.7376 5.0456 1.4986 23 1 12.5720 6.9353 3.0098 24 1 12.8411 4.6939 3.8954 25 6 7.7165 4.0450 0.4869 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 1.0092 -0.9310 34 1 3.9330 0.8523 0.8421 35 1 4.0761 4.6860 -1.0456 36 1 2.5656 3.7486 -1.1337 37 1 3.7924 3.5174 -3.2454 38 1 3.7964 1.9589 -2.3857 39 1 5.2491 2.9872 -2.3707 40 1 5.6851 5.9791 -0.0089 41 1 4.4504 5.0391 0.8656 42 1 5.5627 6.7888 2.3010 43 1 5.7774 5.1346 2.9242 44 1 7.7985 6.6568 1.2162 45 1 7.9111 6.4161 2.9761 46 1 10.1680 6.0076 4.7109 47 1 8.1025 3.0324 0.3700 48 1 8.0686 4.6695 -0.3342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397565743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = -93.427042 kcal Electronic energy + Delta-G solvation = -23360.226148 eV Core-core repulsion = 20219.766644 eV Total energy + Delta-G solvation = -3140.459505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45304 -38.71662 -37.44840 -35.51210 -34.79433 -32.97005 -31.99601 -30.87001 -28.34847 -26.94734 -25.95875 -24.52075 -23.31931 -22.86283 -21.72116 -20.60710 -19.49647 -18.44686 -17.78939 -16.99624 -16.82143 -16.62823 -16.10221 -15.36040 -15.09265 -14.98436 -14.87790 -14.52805 -14.30743 -14.08168 -13.95308 -13.63121 -13.60550 -13.38165 -13.11425 -12.90117 -12.71802 -12.57749 -12.32440 -12.25547 -11.97528 -11.92430 -11.79753 -11.73848 -11.63918 -11.57627 -11.38022 -11.24124 -11.21107 -10.84406 -10.52517 -10.40420 -9.45622 -8.12493 -6.27925 1.37931 1.40038 1.51541 1.72859 2.15698 2.42588 3.13660 3.54557 3.75331 3.93711 4.04362 4.17455 4.21969 4.25471 4.28033 4.33483 4.45525 4.50999 4.54388 4.59930 4.67154 4.75890 4.81727 4.86469 4.87866 4.90937 4.94328 4.97950 5.08135 5.11184 5.13017 5.18399 5.25285 5.29021 5.30436 5.32354 5.46391 5.49957 5.50854 5.57704 5.59800 5.63192 5.91945 6.13233 6.33251 6.62809 6.81940 7.29187 7.40316 8.91277 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.003590 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.605222 B = 7797.018831 C = 7857.607677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.110 4.110 4 C -0.099 4.099 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.112 4.112 8 C -0.156 4.156 9 C 0.506 3.494 10 O -0.599 6.599 11 N -0.608 5.608 12 C 0.109 3.891 13 C -0.129 4.129 14 C -0.105 4.105 15 C 0.041 3.959 16 H -0.018 1.018 17 C -0.538 4.538 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.913 5.913 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.131 3.869 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.047 0.953 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 -1.576 -9.046 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.121 4.121 6 H 0.130 0.870 7 C -0.149 4.149 8 C -0.213 4.213 9 C 0.296 3.704 10 O -0.480 6.480 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.167 4.167 14 C -0.144 4.144 15 C 0.022 3.978 16 H 0.000 1.000 17 C -0.576 4.576 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.209 1.209 25 C 0.008 3.992 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.485 -2.024 -8.963 21.543 hybrid contribution 1.872 -0.167 0.543 1.957 sum -17.612 -2.190 -8.420 19.644 Atomic orbital electron populations 1.21750 0.94754 1.01853 1.02264 1.21543 0.96670 0.96866 1.01532 1.21618 0.92682 0.97185 1.03254 1.21434 0.96656 0.93788 1.01834 1.21465 0.88632 0.99672 1.02333 0.87040 1.21646 1.03241 0.98471 0.91568 1.21857 0.99519 1.01511 0.98378 1.21528 0.91777 0.82151 0.74897 1.90621 1.71285 1.32952 1.53165 1.48352 1.06833 1.10539 1.68152 1.22057 0.96984 0.85079 0.97089 1.21936 0.96586 1.01261 0.96914 1.21417 0.93562 0.97883 1.01503 1.18787 0.94248 0.93630 0.91103 0.99951 1.21470 0.93149 1.42484 1.00544 0.93127 1.25703 1.02662 0.94941 0.94983 1.70019 1.36734 1.43754 1.04699 0.85541 0.80342 0.77938 0.78050 1.19380 1.19965 1.20858 1.21400 0.79136 0.99832 0.98843 0.92425 0.92010 0.92691 0.92457 0.93051 0.91072 0.90048 0.92045 0.94028 0.90539 0.87485 0.90733 0.91991 0.96000 0.89976 0.86740 0.89037 0.93921 0.94355 0.91969 0.92913 0.93420 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.13 -2.06 5.93 30.60 0.18 -1.88 16 3 C -0.11 -1.75 4.82 30.60 0.15 -1.60 16 4 C -0.10 -2.33 3.66 30.60 0.11 -2.22 16 5 C -0.10 -2.39 1.67 -11.54 -0.02 -2.41 16 6 H 0.11 2.25 7.09 -2.39 -0.02 2.23 16 7 C -0.11 -1.98 4.98 30.59 0.15 -1.83 16 8 C -0.16 -3.21 9.32 71.98 0.67 -2.54 16 9 C 0.51 18.24 5.99 87.66 0.53 18.76 16 10 O -0.60 -27.17 15.42 -3.05 -0.05 -27.22 16 11 N -0.61 -22.33 2.98 -819.75 -2.44 -24.78 16 12 C 0.11 3.06 4.94 86.36 0.43 3.48 16 13 C -0.13 -4.37 6.08 30.67 0.19 -4.18 16 14 C -0.11 -4.80 4.96 30.62 0.15 -4.65 16 15 C 0.04 2.15 2.24 -11.61 -0.03 2.13 16 16 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 17 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 18 H 0.05 2.85 7.75 -2.91 -0.02 2.83 16 19 C 0.02 0.91 5.30 84.65 0.45 1.36 16 20 N -0.91 -52.96 11.31 21.45 0.24 -52.71 16 21 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 C 0.13 5.95 5.64 86.22 0.49 6.44 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.04 6.89 -2.39 -0.02 1.02 16 33 H 0.06 1.60 6.02 -2.39 -0.01 1.58 16 34 H 0.04 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.08 1.31 6.04 -2.39 -0.01 1.29 16 36 H 0.11 1.24 6.85 -2.39 -0.02 1.22 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.27 6.04 -2.39 -0.01 1.25 16 39 H 0.02 0.58 7.49 -2.39 -0.02 0.57 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 41 H 0.11 2.29 5.07 -2.38 -0.01 2.28 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16 46 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 47 H 0.05 2.42 7.00 -2.39 -0.02 2.40 16 48 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -69.54 359.08 5.06 -64.48 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.90 Total: 14.50 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.38 Total: -20.60 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -2.20 Total: -77.49 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.54 5.06 -64.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.949 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds