Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.52996 * 109.47638 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47374 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47514 * 304.99777 * 5 4 3 7 7 C 1.52999 * 109.47243 * 65.00651 * 5 4 3 8 8 C 1.52997 * 109.47346 * 185.43618 * 7 5 4 9 9 C 1.50703 * 109.47226 * 185.00029 * 5 4 3 10 10 O 1.21281 * 120.00213 * 274.00304 * 9 5 4 11 11 N 1.34777 * 119.99609 * 93.99830 * 9 5 4 12 12 C 1.46919 * 120.63659 * 354.78543 * 11 9 5 13 13 C 1.53193 * 108.77855 * 126.36525 * 12 11 9 14 14 C 1.53044 * 109.30940 * 54.63913 * 13 12 11 15 15 C 1.53039 * 109.53729 * 298.63623 * 14 13 12 16 16 H 1.09001 * 109.49667 * 301.37820 * 15 14 13 17 17 C 1.50704 * 109.49700 * 181.31675 * 15 14 13 18 18 H 1.07995 * 120.00015 * 239.99710 * 17 15 14 19 19 C 1.37876 * 119.99840 * 59.99987 * 17 15 14 20 20 N 1.31514 * 119.99988 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00061 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46743 * 59.99788 * 21 19 17 23 23 H 1.48498 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46649 * 300.00079 * 21 19 17 25 25 C 1.46933 * 120.62613 * 174.50803 * 11 9 5 26 26 H 1.09002 * 109.46735 * 299.99366 * 1 2 3 27 27 H 1.08994 * 109.47662 * 59.99478 * 1 2 3 28 28 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46735 * 240.00634 * 2 1 3 30 30 H 1.08994 * 109.47662 * 120.00522 * 2 1 3 31 31 H 1.09002 * 109.46685 * 60.00603 * 3 2 1 32 32 H 1.09003 * 109.47332 * 300.01007 * 3 2 1 33 33 H 1.09002 * 109.46744 * 60.00451 * 4 3 2 34 34 H 1.09003 * 109.47428 * 300.00760 * 4 3 2 35 35 H 1.08997 * 109.47473 * 65.43005 * 7 5 4 36 36 H 1.09002 * 109.46647 * 305.43254 * 7 5 4 37 37 H 1.08999 * 109.46967 * 174.97048 * 8 7 5 38 38 H 1.09005 * 109.46961 * 54.97188 * 8 7 5 39 39 H 1.08994 * 109.47033 * 294.97574 * 8 7 5 40 40 H 1.09002 * 109.59376 * 246.15908 * 12 11 9 41 41 H 1.09003 * 109.58156 * 6.43870 * 12 11 9 42 42 H 1.09004 * 109.49779 * 174.59145 * 13 12 11 43 43 H 1.09002 * 109.49828 * 294.68663 * 13 12 11 44 44 H 1.08995 * 109.45767 * 58.65734 * 14 13 12 45 45 H 1.08998 * 109.46026 * 178.62801 * 14 13 12 46 46 H 0.97005 * 119.99628 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.58794 * 353.41583 * 25 11 9 48 48 H 1.09003 * 109.58879 * 113.84774 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3080 8 6 4.0662 5.0466 1.2529 9 6 5.5819 2.8869 -0.1245 10 8 6.2727 2.7833 0.8670 11 7 6.1573 3.0036 -1.3376 12 6 5.3378 3.0152 -2.5570 13 6 5.6856 4.2642 -3.3730 14 6 7.1941 4.2974 -3.6293 15 6 7.9386 4.3699 -2.2941 16 1 7.6233 5.2600 -1.7497 17 6 9.4225 4.4351 -2.5486 18 1 10.0719 3.6661 -2.1570 19 6 9.9512 5.4766 -3.2813 20 7 9.1604 6.4127 -3.7586 21 14 11.7905 5.5571 -3.5973 22 1 12.2190 4.3435 -4.3380 23 1 12.1018 6.7644 -4.4040 24 1 12.5127 5.6271 -2.3016 25 6 7.6158 3.1278 -1.4655 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8909 34 1 3.9338 0.9285 0.8890 35 1 4.1878 3.0881 2.1420 36 1 2.5980 3.4819 1.4450 37 1 3.6993 5.5526 2.1459 38 1 3.6256 5.5059 0.3680 39 1 5.1516 5.1342 1.2056 40 1 5.5477 2.1231 -3.1470 41 1 4.2818 3.0348 -2.2873 42 1 5.1554 4.2361 -4.3250 43 1 5.3911 5.1550 -2.8182 44 1 7.4918 3.3945 -4.1625 45 1 7.4411 5.1723 -4.2306 46 1 9.5323 7.1453 -4.2744 47 1 8.0624 3.2242 -0.4759 48 1 8.0153 2.2450 -1.9647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397565746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -79.976018 kcal Electronic energy + Delta-G solvation = -23380.252198 eV Core-core repulsion = 20240.375973 eV Total energy + Delta-G solvation = -3139.876224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97993 -37.20710 -36.24209 -34.00419 -33.42571 -31.32804 -30.64415 -30.12818 -27.02114 -25.07925 -24.49664 -22.90077 -22.07750 -21.62705 -20.93049 -19.29628 -18.11161 -17.09302 -16.21370 -15.67011 -15.20451 -14.94088 -14.61526 -14.06671 -13.90473 -13.70753 -13.59155 -13.45606 -12.96698 -12.73674 -12.68945 -12.52999 -12.18716 -11.99012 -11.92947 -11.58827 -11.32973 -11.23649 -11.07163 -10.95255 -10.85687 -10.76856 -10.67116 -10.60178 -10.39113 -10.19921 -9.94540 -9.78377 -9.44763 -9.10456 -8.80155 -8.37906 -7.85408 -6.01867 -4.09018 3.11502 3.31384 3.35641 3.38531 3.59434 4.42541 4.59446 4.66866 4.79444 4.91744 5.02056 5.13570 5.20619 5.28271 5.29880 5.44406 5.51655 5.55772 5.63246 5.64830 5.66105 5.72747 5.82213 5.83182 5.88114 5.92276 6.04490 6.05653 6.17061 6.17822 6.25744 6.34204 6.37617 6.43405 6.46261 6.51231 6.68084 6.83290 7.01184 7.18624 7.34582 7.69027 7.92798 8.06919 8.08497 8.38146 8.72946 8.94705 9.55810 11.03557 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.003794 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.310078 B = 7377.463151 C = 7636.819241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.111 4.111 6 H 0.090 0.910 7 C -0.107 4.107 8 C -0.155 4.155 9 C 0.516 3.484 10 O -0.552 6.552 11 N -0.603 5.603 12 C 0.107 3.893 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.118 3.882 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.261 0.739 47 H 0.077 0.923 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 -8.220 4.024 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.145 4.145 5 C -0.132 4.132 6 H 0.108 0.892 7 C -0.144 4.144 8 C -0.213 4.213 9 C 0.304 3.696 10 O -0.431 6.431 11 N -0.335 5.335 12 C -0.016 4.016 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.046 0.954 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.003 4.003 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.160 -8.108 4.430 18.615 hybrid contribution 1.020 0.172 -0.445 1.126 sum -15.140 -7.936 3.985 17.552 Atomic orbital electron populations 1.21774 0.96014 1.01418 1.01762 1.21535 0.95674 0.97041 1.02084 1.21677 0.94867 0.96745 1.02361 1.21499 0.95536 0.94629 1.02851 1.21483 0.93151 0.98111 1.00460 0.89152 1.21447 1.00596 0.95884 0.96511 1.21801 1.02521 0.95718 1.01213 1.20461 0.90038 0.76175 0.82974 1.90634 1.64942 1.50753 1.36758 1.48317 1.08880 1.70888 1.05386 1.21798 0.94305 0.99233 0.86297 1.22010 1.00473 0.96541 0.98332 1.21623 0.89922 1.02453 1.01008 1.18880 0.95291 0.91933 0.91745 0.95386 1.21045 0.91818 1.08890 1.33560 0.92561 1.24933 0.97860 0.95417 0.95576 1.69864 1.34574 1.12244 1.36109 0.86641 0.85594 0.77357 0.78323 1.20260 1.21306 1.20224 1.21881 0.76756 1.00061 1.01643 0.92816 0.92767 0.92963 0.92036 0.92054 0.91503 0.91859 0.91657 0.91236 0.90849 0.91453 0.92815 0.92949 0.92112 0.92052 0.90864 0.92548 0.92407 0.94633 0.88653 0.92933 0.90480 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.04 4.98 -26.73 -0.13 -1.18 16 4 C -0.11 -1.20 4.66 -26.74 -0.12 -1.32 16 5 C -0.11 -1.47 1.48 -91.77 -0.14 -1.61 16 6 H 0.09 1.11 5.97 -51.93 -0.31 0.80 16 7 C -0.11 -1.35 5.03 -26.73 -0.13 -1.48 16 8 C -0.16 -2.10 9.65 37.16 0.36 -1.74 16 9 C 0.52 9.33 5.85 -10.98 -0.06 9.27 16 10 O -0.55 -11.96 15.35 5.56 0.09 -11.87 16 11 N -0.60 -11.26 2.98 -173.03 -0.52 -11.77 16 12 C 0.11 1.66 6.31 -3.71 -0.02 1.64 16 13 C -0.14 -2.40 6.08 -26.61 -0.16 -2.56 16 14 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 1.00 2.24 -91.87 -0.21 0.80 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -24.99 11.31 55.43 0.63 -24.37 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.59 5.61 -3.93 -0.02 2.57 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.57 6.45 -51.93 -0.34 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.03 7.66 -51.93 -0.40 0.64 16 36 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.93 5.35 -51.93 -0.28 0.65 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 46 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -29.55 365.59 -9.29 -38.84 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.02 Total: 0.30 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.96 Total: -12.81 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.11 Total: -36.14 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.55 -9.29 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.136 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds