Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.52996 * 109.47638 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47374 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47514 * 304.99777 * 5 4 3 7 7 C 1.52999 * 109.47243 * 65.00651 * 5 4 3 8 8 C 1.52997 * 109.47346 * 185.43618 * 7 5 4 9 9 C 1.50703 * 109.47226 * 185.00029 * 5 4 3 10 10 O 1.21281 * 120.00213 * 274.00304 * 9 5 4 11 11 N 1.34777 * 119.99609 * 93.99830 * 9 5 4 12 12 C 1.46919 * 120.63659 * 354.78543 * 11 9 5 13 13 C 1.53193 * 108.77855 * 126.36525 * 12 11 9 14 14 C 1.53044 * 109.30940 * 54.63913 * 13 12 11 15 15 C 1.53039 * 109.53729 * 298.63623 * 14 13 12 16 16 H 1.09001 * 109.49667 * 301.37820 * 15 14 13 17 17 C 1.50704 * 109.49700 * 181.31675 * 15 14 13 18 18 H 1.07995 * 120.00015 * 239.99710 * 17 15 14 19 19 C 1.37876 * 119.99840 * 59.99987 * 17 15 14 20 20 N 1.31514 * 119.99988 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00061 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46743 * 59.99788 * 21 19 17 23 23 H 1.48498 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46649 * 300.00079 * 21 19 17 25 25 C 1.46933 * 120.62613 * 174.50803 * 11 9 5 26 26 H 1.09002 * 109.46735 * 299.99366 * 1 2 3 27 27 H 1.08994 * 109.47662 * 59.99478 * 1 2 3 28 28 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46735 * 240.00634 * 2 1 3 30 30 H 1.08994 * 109.47662 * 120.00522 * 2 1 3 31 31 H 1.09002 * 109.46685 * 60.00603 * 3 2 1 32 32 H 1.09003 * 109.47332 * 300.01007 * 3 2 1 33 33 H 1.09002 * 109.46744 * 60.00451 * 4 3 2 34 34 H 1.09003 * 109.47428 * 300.00760 * 4 3 2 35 35 H 1.08997 * 109.47473 * 65.43005 * 7 5 4 36 36 H 1.09002 * 109.46647 * 305.43254 * 7 5 4 37 37 H 1.08999 * 109.46967 * 174.97048 * 8 7 5 38 38 H 1.09005 * 109.46961 * 54.97188 * 8 7 5 39 39 H 1.08994 * 109.47033 * 294.97574 * 8 7 5 40 40 H 1.09002 * 109.59376 * 246.15908 * 12 11 9 41 41 H 1.09003 * 109.58156 * 6.43870 * 12 11 9 42 42 H 1.09004 * 109.49779 * 174.59145 * 13 12 11 43 43 H 1.09002 * 109.49828 * 294.68663 * 13 12 11 44 44 H 1.08995 * 109.45767 * 58.65734 * 14 13 12 45 45 H 1.08998 * 109.46026 * 178.62801 * 14 13 12 46 46 H 0.97005 * 119.99628 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.58794 * 353.41583 * 25 11 9 48 48 H 1.09003 * 109.58879 * 113.84774 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3080 8 6 4.0662 5.0466 1.2529 9 6 5.5819 2.8869 -0.1245 10 8 6.2727 2.7833 0.8670 11 7 6.1573 3.0036 -1.3376 12 6 5.3378 3.0152 -2.5570 13 6 5.6856 4.2642 -3.3730 14 6 7.1941 4.2974 -3.6293 15 6 7.9386 4.3699 -2.2941 16 1 7.6233 5.2600 -1.7497 17 6 9.4225 4.4351 -2.5486 18 1 10.0719 3.6661 -2.1570 19 6 9.9512 5.4766 -3.2813 20 7 9.1604 6.4127 -3.7586 21 14 11.7905 5.5571 -3.5973 22 1 12.2190 4.3435 -4.3380 23 1 12.1018 6.7644 -4.4040 24 1 12.5127 5.6271 -2.3016 25 6 7.6158 3.1278 -1.4655 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8909 34 1 3.9338 0.9285 0.8890 35 1 4.1878 3.0881 2.1420 36 1 2.5980 3.4819 1.4450 37 1 3.6993 5.5526 2.1459 38 1 3.6256 5.5059 0.3680 39 1 5.1516 5.1342 1.2056 40 1 5.5477 2.1231 -3.1470 41 1 4.2818 3.0348 -2.2873 42 1 5.1554 4.2361 -4.3250 43 1 5.3911 5.1550 -2.8182 44 1 7.4918 3.3945 -4.1625 45 1 7.4411 5.1723 -4.2306 46 1 9.5323 7.1453 -4.2744 47 1 8.0624 3.2242 -0.4759 48 1 8.0153 2.2450 -1.9647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397565746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -95.008413 kcal Electronic energy + Delta-G solvation = -23380.904051 eV Core-core repulsion = 20240.375973 eV Total energy + Delta-G solvation = -3140.528078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40126 -38.68363 -37.35348 -35.37105 -34.84177 -33.03563 -32.07970 -31.34837 -28.10565 -26.94819 -25.95239 -23.81313 -23.45475 -23.02530 -21.77772 -20.86666 -19.56557 -18.64577 -18.06663 -16.77640 -16.59408 -16.32994 -16.15688 -15.39624 -15.12519 -14.90829 -14.76127 -14.55310 -14.45381 -14.30970 -13.95272 -13.62359 -13.58050 -13.41820 -12.98709 -12.86844 -12.71714 -12.64764 -12.46652 -12.16458 -12.03412 -11.94512 -11.87494 -11.83227 -11.64670 -11.52515 -11.44383 -11.24931 -11.18118 -10.85440 -10.51650 -10.38807 -9.47213 -8.12142 -6.27588 1.39870 1.41328 1.48840 1.70004 2.14842 2.42779 3.14007 3.51593 3.75177 3.90241 3.99024 4.19296 4.23382 4.25964 4.29842 4.35788 4.41967 4.47918 4.55132 4.62291 4.64868 4.69500 4.80295 4.82368 4.86188 4.92734 4.94401 4.96865 5.09400 5.11450 5.12559 5.15034 5.24653 5.28426 5.29762 5.36850 5.41557 5.48507 5.51628 5.57705 5.58632 5.60066 5.91890 6.12741 6.33346 6.61267 6.81589 7.28035 7.40467 8.91271 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.003794 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.310078 B = 7377.463151 C = 7636.819241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.101 4.101 6 H 0.111 0.889 7 C -0.104 4.104 8 C -0.154 4.154 9 C 0.508 3.492 10 O -0.597 6.597 11 N -0.608 5.608 12 C 0.107 3.893 13 C -0.127 4.127 14 C -0.106 4.106 15 C 0.043 3.957 16 H -0.015 1.015 17 C -0.541 4.541 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.912 5.912 21 Si 0.955 3.045 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.277 1.277 25 C 0.131 3.869 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.262 0.738 47 H 0.047 0.953 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 -9.172 3.155 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.122 4.122 6 H 0.129 0.871 7 C -0.141 4.141 8 C -0.212 4.212 9 C 0.298 3.702 10 O -0.478 6.478 11 N -0.340 5.340 12 C -0.014 4.014 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.024 3.976 16 H 0.003 0.997 17 C -0.580 4.580 18 H 0.068 0.932 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.780 3.220 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.202 1.202 25 C 0.008 3.992 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.656 -9.070 3.546 21.045 hybrid contribution 1.813 0.494 -0.133 1.884 sum -16.843 -8.576 3.413 19.206 Atomic orbital electron populations 1.21762 0.95137 1.01826 1.02136 1.21529 0.96408 0.96547 1.01911 1.21644 0.92523 0.97451 1.03348 1.21487 0.97433 0.92630 1.02411 1.21550 0.88926 1.00095 1.01608 0.87086 1.21476 1.02553 0.94669 0.95418 1.21801 0.99662 0.97017 1.02702 1.21456 0.92179 0.74622 0.81905 1.90609 1.66476 1.52530 1.38201 1.48410 1.07568 1.70888 1.07088 1.22042 0.95905 0.98690 0.84783 1.21918 0.96940 0.97323 1.00371 1.21419 0.93367 1.00862 0.98725 1.18768 0.94545 0.91237 0.93018 0.99707 1.21413 0.93417 1.09199 1.33923 0.93156 1.25682 1.02122 0.95041 0.95292 1.69998 1.36203 1.12542 1.36337 0.85668 0.80424 0.77765 0.78148 1.19279 1.20595 1.20222 1.21417 0.79570 0.98836 0.99382 0.92536 0.92285 0.92639 0.92036 0.92549 0.90857 0.90468 0.91407 0.92584 0.92807 0.87721 0.91106 0.91754 0.96449 0.90205 0.86757 0.89122 0.93606 0.94539 0.91867 0.92871 0.93398 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.65 5.93 30.59 0.18 -1.47 16 3 C -0.11 -1.53 4.98 30.59 0.15 -1.38 16 4 C -0.10 -1.99 4.66 30.59 0.14 -1.85 16 5 C -0.10 -2.46 1.48 -11.54 -0.02 -2.47 16 6 H 0.11 2.26 5.97 -2.39 -0.01 2.24 16 7 C -0.10 -2.42 5.03 30.59 0.15 -2.27 16 8 C -0.15 -4.05 9.65 71.98 0.69 -3.36 16 9 C 0.51 18.35 5.85 87.66 0.51 18.87 16 10 O -0.60 -26.87 15.35 -3.03 -0.05 -26.92 16 11 N -0.61 -22.55 2.98 -819.72 -2.44 -24.99 16 12 C 0.11 3.04 6.31 86.36 0.54 3.59 16 13 C -0.13 -4.30 6.08 30.67 0.19 -4.11 16 14 C -0.11 -4.79 4.96 30.62 0.15 -4.64 16 15 C 0.04 2.24 2.24 -11.60 -0.03 2.22 16 16 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 17 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.02 1.00 5.30 84.65 0.45 1.45 16 20 N -0.91 -52.60 11.31 21.45 0.24 -52.36 16 21 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 C 0.13 5.97 5.61 86.22 0.48 6.46 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.93 6.45 -2.39 -0.02 0.91 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 36 H 0.10 1.71 6.33 -2.39 -0.02 1.69 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.02 0.58 7.37 -2.39 -0.02 0.56 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.11 2.35 5.35 -2.39 -0.01 2.33 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 45 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 46 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 47 H 0.05 2.43 7.04 -2.39 -0.02 2.41 16 48 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.46 365.59 5.22 -63.24 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.89 Total: 15.17 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.54 Total: -20.29 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.20 Total: -77.35 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.46 5.22 -63.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.768 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds