Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46919 * 2 1 4 4 C 1.53002 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47050 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47552 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99967 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00575 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.62462 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77274 * 233.62733 * 11 10 8 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31516 * 120.00128 * 359.97438 * 18 16 14 20 20 Si 1.86792 * 119.99950 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47098 * 119.99710 * 20 18 16 23 23 H 1.48497 * 109.47530 * 239.99621 * 20 18 16 24 24 C 1.46925 * 120.63519 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47280 * 300.00199 * 1 2 3 27 27 H 1.08998 * 109.46575 * 60.00676 * 1 2 3 28 28 H 1.09006 * 109.47589 * 239.99683 * 2 1 3 29 29 H 1.09003 * 109.47232 * 119.99571 * 2 1 3 30 30 H 1.08998 * 109.47430 * 60.00101 * 3 2 1 31 31 H 1.08998 * 109.46945 * 299.99097 * 3 2 1 32 32 H 1.09006 * 109.47227 * 59.99804 * 4 3 2 33 33 H 1.08997 * 109.47399 * 300.00245 * 4 3 2 34 34 H 1.08998 * 109.47167 * 60.00625 * 5 4 3 35 35 H 1.08992 * 109.47627 * 299.99799 * 5 4 3 36 36 H 1.09006 * 109.47227 * 60.00147 * 6 5 4 37 37 H 1.08997 * 109.47399 * 300.00588 * 6 5 4 38 38 H 1.08993 * 109.47505 * 59.99577 * 7 6 5 39 39 H 1.09005 * 109.46900 * 299.99780 * 7 6 5 40 40 H 1.09002 * 109.58421 * 113.84017 * 11 10 8 41 41 H 1.08993 * 109.70684 * 353.48793 * 11 10 8 42 42 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 43 43 H 1.08993 * 109.49868 * 65.31880 * 12 11 10 44 44 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 45 45 H 1.08993 * 109.45850 * 181.38486 * 13 12 11 46 46 H 0.96999 * 119.99883 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.58300 * 6.58314 * 24 10 8 48 48 H 1.08998 * 109.58651 * 246.16254 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0013 7 6 6.1200 4.3276 0.0013 8 6 7.6269 4.3277 0.0019 9 8 8.2334 3.2773 0.0028 10 7 8.3008 5.4949 0.0015 11 6 7.5801 6.7753 0.0010 12 6 8.0879 7.6263 -1.1671 13 6 9.6094 7.7615 -1.0711 14 6 10.2532 6.3764 -1.1670 15 1 9.9689 5.9075 -2.1090 16 6 11.7527 6.5134 -1.1056 17 1 12.3071 6.0310 -0.3142 18 6 12.4169 7.2546 -2.0599 19 7 11.7418 7.8415 -3.0240 20 14 14.2755 7.4238 -1.9843 21 1 14.7938 6.6724 -0.8130 22 1 14.8736 6.8750 -3.2279 23 1 14.6371 8.8581 -1.8524 24 6 9.7700 5.5111 0.0016 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8908 34 1 3.7163 3.3994 0.8896 35 1 3.7170 3.3984 -0.8904 36 1 5.9741 2.3707 -0.8881 37 1 5.9726 2.3719 0.8919 38 1 5.7559 4.8417 0.8907 39 1 5.7574 4.8411 -0.8892 40 1 7.7626 7.2976 0.9402 41 1 6.5114 6.5955 -0.1153 42 1 7.6314 8.6152 -1.1222 43 1 7.8241 7.1457 -2.1091 44 1 9.8739 8.2197 -0.1182 45 1 9.9706 8.3870 -1.8873 46 1 12.2090 8.3632 -3.6951 47 1 10.1466 4.4949 -0.1158 48 1 10.1307 5.9305 0.9407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397654161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -89.315543 kcal Electronic energy + Delta-G solvation = -22045.483464 eV Core-core repulsion = 18905.202247 eV Total energy + Delta-G solvation = -3140.281217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63070 -37.10346 -36.55137 -34.27947 -33.46870 -31.39999 -31.00096 -29.99981 -27.09843 -25.08123 -24.53839 -22.86287 -21.67347 -21.21973 -20.99422 -19.64468 -18.16268 -16.76341 -16.30035 -16.10836 -15.44689 -15.19143 -14.64138 -14.33284 -14.22742 -13.66417 -13.48982 -13.40570 -13.17299 -12.75374 -12.65938 -12.37632 -12.23722 -12.07307 -11.96400 -11.83191 -11.37628 -11.21444 -11.03820 -10.99351 -10.82217 -10.77729 -10.74618 -10.56889 -10.55166 -10.26922 -9.95606 -9.79544 -9.46008 -9.21300 -8.80652 -8.38968 -7.86562 -6.02191 -4.09086 3.11501 3.28535 3.36697 3.40931 3.59349 4.41971 4.45497 4.65043 4.78126 4.89410 4.92129 4.98601 5.18835 5.23120 5.26760 5.33479 5.41399 5.44094 5.50117 5.59614 5.64471 5.68548 5.71777 5.75338 5.80115 5.84064 5.88117 5.95594 6.03196 6.13437 6.15618 6.28574 6.33859 6.39577 6.41995 6.49364 6.67515 6.82314 6.99842 7.17763 7.34062 7.69315 7.92495 8.05555 8.08011 8.37963 8.70803 8.95016 9.55779 11.03377 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.002536 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.569537 B =11036.885480 C =11320.956375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.104 4.104 7 C -0.139 4.139 8 C 0.506 3.494 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.109 3.891 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.116 3.884 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.260 0.740 47 H 0.078 0.922 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.721 -6.719 5.996 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.433 6.433 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.150 4.150 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.360 -7.156 5.847 21.452 hybrid contribution 1.000 0.390 -0.073 1.076 sum -18.360 -6.766 5.774 20.401 Atomic orbital electron populations 1.21781 0.96078 1.01449 1.01730 1.21555 0.95674 0.97191 1.02020 1.21634 0.95682 0.96533 1.01933 1.21607 0.94958 0.97015 1.02264 1.21619 0.95458 0.96730 1.01883 1.21342 0.94199 0.95092 1.03518 1.21694 0.92955 0.99511 1.03733 1.20617 0.89942 0.83588 0.76443 1.90652 1.70494 1.31091 1.51039 1.48338 1.08459 1.05278 1.71688 1.21728 0.95385 0.84758 0.99511 1.22006 1.00128 0.98005 0.97209 1.21627 0.90072 1.01384 1.01952 1.18982 0.94974 0.91259 0.92754 0.95321 1.21127 0.91302 1.31280 1.11422 0.92429 1.24948 0.98313 0.95473 0.95187 1.69884 1.35125 1.33476 1.14321 0.86518 0.85653 0.77715 0.78019 1.19726 1.21034 1.21048 1.21983 0.76171 1.02103 1.00225 0.92934 0.92834 0.92809 0.92064 0.92106 0.92144 0.92086 0.91924 0.91988 0.92125 0.92021 0.91266 0.91401 0.89492 0.89275 0.92043 0.91079 0.92494 0.92403 0.94612 0.88653 0.93048 0.90363 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 4 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 5 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.10 -1.25 4.50 -26.73 -0.12 -1.37 16 7 C -0.14 -1.78 4.05 -27.89 -0.11 -1.89 16 8 C 0.51 9.18 7.70 -10.99 -0.08 9.10 16 9 O -0.55 -12.11 15.40 5.55 0.09 -12.02 16 10 N -0.61 -11.33 2.97 -172.75 -0.51 -11.84 16 11 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C -0.11 -2.52 4.96 -26.69 -0.13 -2.66 16 14 C 0.04 0.98 2.25 -91.64 -0.21 0.77 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.12 2.56 5.66 -3.70 -0.02 2.54 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 46 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 47 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 48 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -29.97 372.73 -10.03 -40.00 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -9.37 Total: -1.33 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.46 Total: -12.19 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.27 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.97 -10.03 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397654161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.312 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds