Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47086 * 2 1 4 4 C 1.53002 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46821 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46821 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47351 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47497 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99508 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.62932 * 359.97291 * 10 8 7 12 12 C 1.53187 * 108.77625 * 126.41524 * 11 10 8 13 13 C 1.53046 * 109.31363 * 54.63376 * 12 11 10 14 14 C 1.53046 * 109.53579 * 298.63645 * 13 12 11 15 15 H 1.08995 * 109.49499 * 301.40973 * 14 13 12 16 16 C 1.50700 * 109.49623 * 181.31259 * 14 13 12 17 17 H 1.07996 * 120.00534 * 240.00313 * 16 14 13 18 18 C 1.37878 * 119.99817 * 59.99951 * 16 14 13 19 19 N 1.31514 * 120.00036 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00058 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47346 * 90.00193 * 20 18 16 22 22 H 1.48507 * 109.47138 * 210.00292 * 20 18 16 23 23 H 1.48503 * 109.47135 * 329.99794 * 20 18 16 24 24 C 1.46921 * 120.63131 * 179.97438 * 10 8 7 25 25 H 1.09003 * 109.47159 * 59.99901 * 1 2 3 26 26 H 1.09008 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47401 * 299.99835 * 1 2 3 28 28 H 1.09001 * 109.46930 * 239.99936 * 2 1 3 29 29 H 1.09003 * 109.47159 * 120.00099 * 2 1 3 30 30 H 1.09001 * 109.47288 * 60.00155 * 3 2 1 31 31 H 1.09003 * 109.47202 * 300.00072 * 3 2 1 32 32 H 1.08996 * 109.46786 * 60.00386 * 4 3 2 33 33 H 1.09003 * 109.47159 * 300.00099 * 4 3 2 34 34 H 1.08996 * 109.47107 * 60.00605 * 5 4 3 35 35 H 1.08997 * 109.47075 * 299.99677 * 5 4 3 36 36 H 1.09003 * 109.47401 * 60.00187 * 6 5 4 37 37 H 1.08995 * 109.47279 * 300.00440 * 6 5 4 38 38 H 1.09001 * 109.47130 * 60.00090 * 7 6 5 39 39 H 1.09003 * 109.47096 * 300.00170 * 7 6 5 40 40 H 1.09000 * 109.58351 * 246.20638 * 11 10 8 41 41 H 1.09002 * 109.58642 * 6.48295 * 11 10 8 42 42 H 1.09001 * 109.49833 * 294.68424 * 12 11 10 43 43 H 1.08996 * 109.49835 * 174.58430 * 12 11 10 44 44 H 1.08993 * 109.46296 * 178.61734 * 13 12 11 45 45 H 1.09000 * 109.45696 * 58.65290 * 13 12 11 46 46 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 47 47 H 1.08996 * 109.58905 * 113.79723 * 24 10 8 48 48 H 1.09008 * 109.58585 * 353.36923 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1200 4.3275 -0.0039 8 6 7.6270 4.3275 -0.0058 9 8 8.2334 3.2771 -0.0056 10 7 8.3009 5.4947 -0.0066 11 6 7.5803 6.7751 -0.0063 12 6 8.0898 7.6273 1.1602 13 6 9.6111 7.7623 1.0619 14 6 10.2550 6.3772 1.1582 15 1 9.9721 5.9093 2.1011 16 6 11.7544 6.5140 1.0936 17 1 12.3073 6.0299 0.3023 18 6 12.4203 7.2574 2.0449 19 7 11.7471 7.8467 3.0088 20 14 14.2788 7.4277 1.9646 21 1 14.6322 8.6161 1.1473 22 1 14.8206 7.5922 3.3375 23 1 14.8611 6.2100 1.3453 24 6 9.7700 5.5108 -0.0079 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 3.7170 3.3990 0.8887 35 1 3.7162 3.3985 -0.8913 36 1 5.9726 2.3710 -0.8928 37 1 5.9740 2.3712 0.8871 38 1 5.7575 4.8418 0.8861 39 1 5.7559 4.8408 -0.8939 40 1 7.7614 7.2965 -0.9463 41 1 6.5119 6.5931 0.1106 42 1 7.8273 7.1476 2.1031 43 1 7.6332 8.6160 1.1150 44 1 9.9736 8.3886 1.8769 45 1 9.8742 8.2195 0.1080 46 1 12.2157 8.3694 3.6783 47 1 10.1300 5.9290 -0.9479 48 1 10.1467 4.4948 0.1106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397654163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -89.258001 kcal Electronic energy + Delta-G solvation = -22045.518712 eV Core-core repulsion = 18905.239990 eV Total energy + Delta-G solvation = -3140.278722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.63147 -37.10418 -36.55189 -34.27929 -33.46922 -31.39926 -31.00066 -30.00127 -27.09758 -25.07940 -24.53752 -22.86312 -21.67304 -21.21954 -20.99407 -19.64348 -18.16133 -16.76274 -16.30050 -16.10543 -15.44641 -15.19096 -14.64137 -14.33430 -14.22738 -13.66413 -13.48909 -13.40637 -13.17308 -12.75149 -12.65808 -12.37574 -12.23644 -12.07172 -11.96376 -11.83159 -11.37577 -11.21436 -11.03598 -10.97494 -10.82259 -10.77761 -10.76430 -10.57372 -10.55175 -10.26687 -9.95373 -9.79832 -9.45617 -9.21219 -8.81590 -8.38434 -7.86543 -6.01880 -4.08901 3.11507 3.29556 3.36394 3.40231 3.59408 4.42054 4.45529 4.65027 4.78144 4.89449 4.92134 4.98586 5.18827 5.23162 5.26861 5.33542 5.41399 5.44079 5.50115 5.59601 5.64545 5.68549 5.71756 5.75343 5.80051 5.84066 5.88115 5.95578 6.03198 6.13464 6.15632 6.28586 6.33919 6.39598 6.42108 6.49521 6.67578 6.82510 7.00019 7.17853 7.34122 7.69241 7.92649 8.05646 8.08163 8.38096 8.70827 8.94924 9.55898 11.03606 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.002536 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.202836 B =11038.987477 C =11324.075570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.104 4.104 7 C -0.139 4.139 8 C 0.506 3.494 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.109 3.891 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.116 3.884 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.053 0.947 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.726 -6.722 -5.948 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.433 6.433 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.005 4.005 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.365 -7.160 -5.793 21.443 hybrid contribution 1.003 0.392 0.050 1.078 sum -18.362 -6.768 -5.743 20.394 Atomic orbital electron populations 1.21785 0.96078 1.01448 1.01730 1.21552 0.95673 0.97191 1.02020 1.21634 0.95682 0.96533 1.01934 1.21607 0.94958 0.97016 1.02263 1.21620 0.95458 0.96730 1.01882 1.21342 0.94199 0.95092 1.03519 1.21697 0.92956 0.99511 1.03731 1.20617 0.89941 0.83587 0.76445 1.90652 1.70502 1.31081 1.51038 1.48337 1.08460 1.05283 1.71688 1.21734 0.95369 0.84755 0.99519 1.22002 1.00124 0.97993 0.97214 1.21630 0.90067 1.01399 1.01948 1.18964 0.94943 0.91248 0.92778 0.95331 1.21084 0.91310 1.31242 1.11563 0.92488 1.24945 0.98308 0.95471 0.95167 1.69873 1.35230 1.33306 1.14392 0.86573 0.85605 0.78474 0.77233 1.20698 1.21244 1.19860 1.21969 0.76181 1.02107 1.00231 0.92835 0.92933 0.92809 0.92106 0.92064 0.92086 0.92145 0.91994 0.91917 0.92022 0.92123 0.91401 0.91265 0.89268 0.89500 0.92049 0.91085 0.92404 0.92493 0.88637 0.94618 0.92993 0.92842 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 4 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 5 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.10 -1.25 4.50 -26.73 -0.12 -1.37 16 7 C -0.14 -1.78 4.05 -27.88 -0.11 -1.89 16 8 C 0.51 9.18 7.70 -10.99 -0.08 9.10 16 9 O -0.55 -12.11 15.40 5.55 0.09 -12.02 16 10 N -0.61 -11.33 2.97 -172.79 -0.51 -11.84 16 11 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C -0.11 -2.53 4.96 -26.68 -0.13 -2.66 16 14 C 0.04 0.99 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.06 11.31 55.43 0.63 -24.43 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.56 5.65 -3.73 -0.02 2.54 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 39 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.08 1.86 7.01 -51.92 -0.36 1.50 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -29.94 372.71 -10.03 -39.97 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -9.37 Total: -1.30 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.46 Total: -12.19 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.27 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.94 -10.03 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397654163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.286 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds