Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47484 * 2 1 4 4 C 1.52997 * 109.47250 * 185.06928 * 3 2 1 5 5 C 1.53002 * 109.47105 * 297.42306 * 4 3 2 6 6 C 1.53002 * 109.47029 * 295.99426 * 5 4 3 7 7 C 1.52999 * 109.47089 * 184.84005 * 6 5 4 8 8 C 1.50700 * 109.47629 * 57.42378 * 4 3 2 9 9 O 1.21282 * 119.99680 * 258.43176 * 8 4 3 10 10 N 1.34773 * 119.99812 * 78.42855 * 8 4 3 11 11 C 1.46992 * 120.61838 * 4.88812 * 10 8 4 12 12 C 1.53196 * 108.73979 * 126.38618 * 11 10 8 13 13 C 1.53039 * 109.33801 * 54.62597 * 12 11 10 14 14 C 1.53040 * 109.53657 * 298.61803 * 13 12 11 15 15 H 1.09003 * 109.49825 * 301.41725 * 14 13 12 16 16 C 1.50701 * 109.49859 * 181.31395 * 14 13 12 17 17 H 1.07999 * 120.00171 * 245.68501 * 16 14 13 18 18 C 1.37878 * 119.99761 * 65.68187 * 16 14 13 19 19 N 1.31518 * 119.99993 * 6.66371 * 18 16 14 20 20 Si 1.86800 * 120.00255 * 186.66055 * 18 16 14 21 21 H 1.48499 * 109.47151 * 94.98228 * 20 18 16 22 22 H 1.48498 * 109.47208 * 214.98387 * 20 18 16 23 23 H 1.48505 * 109.46562 * 334.98173 * 20 18 16 24 24 C 1.46926 * 120.63044 * 184.86586 * 10 8 4 25 25 H 1.09001 * 109.46825 * 299.99721 * 1 2 3 26 26 H 1.08998 * 109.47415 * 60.00153 * 1 2 3 27 27 H 1.09003 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47284 * 239.99665 * 2 1 3 29 29 H 1.09005 * 109.47293 * 120.00259 * 2 1 3 30 30 H 1.08992 * 109.47007 * 65.06302 * 3 2 1 31 31 H 1.09000 * 109.46491 * 305.06614 * 3 2 1 32 32 H 1.09004 * 109.46779 * 177.42778 * 4 3 2 33 33 H 1.09005 * 109.47231 * 55.99172 * 5 4 3 34 34 H 1.08996 * 109.47174 * 175.99611 * 5 4 3 35 35 H 1.08999 * 109.47452 * 304.84492 * 6 5 4 36 36 H 1.09002 * 109.47287 * 64.84697 * 6 5 4 37 37 H 1.09004 * 109.47274 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47572 * 300.00022 * 7 6 5 39 39 H 1.08996 * 109.47138 * 60.00060 * 7 6 5 40 40 H 1.09008 * 109.62933 * 6.59887 * 11 10 8 41 41 H 1.09000 * 109.58630 * 246.15077 * 11 10 8 42 42 H 1.09000 * 109.49413 * 294.65884 * 12 11 10 43 43 H 1.09003 * 109.49688 * 174.59167 * 12 11 10 44 44 H 1.08995 * 109.46022 * 58.63963 * 13 12 11 45 45 H 1.08997 * 109.46038 * 178.60274 * 13 12 11 46 46 H 0.97001 * 120.00103 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58789 * 113.84395 * 24 10 8 48 48 H 1.09003 * 109.70277 * 353.49020 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4443 -0.1275 5 6 4.1787 0.7431 1.0859 6 6 3.8561 1.5390 2.3522 7 6 4.5698 0.9057 3.5482 8 6 3.9647 0.7155 -1.3844 9 8 4.3736 -0.4245 -1.3203 10 7 3.8680 1.3306 -2.5797 11 6 3.4765 2.7450 -2.6643 12 6 4.5317 3.4998 -3.4790 13 6 4.7103 2.8144 -4.8357 14 6 5.1997 1.3799 -4.6239 15 1 6.1412 1.3940 -4.0749 16 6 5.4061 0.7163 -5.9611 17 1 4.7849 -0.1181 -6.2515 18 6 6.3880 1.1744 -6.8137 19 7 7.2290 2.1016 -6.4104 20 14 6.5239 0.4781 -8.5418 21 1 5.7885 1.3550 -9.4880 22 1 7.9536 0.4116 -8.9377 23 1 5.9376 -0.8860 -8.5732 24 6 4.1523 0.6004 -3.8225 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7527 1.9294 0.9318 31 1 1.6045 1.9818 -0.8412 32 1 3.9242 2.4724 -0.1734 33 1 3.7649 -0.2616 1.1729 34 1 5.2598 0.6813 0.9612 35 1 4.1940 2.5681 2.2306 36 1 2.7797 1.5279 2.5239 37 1 4.3403 1.4730 4.4503 38 1 4.2318 -0.1234 3.6699 39 1 5.6461 0.9167 3.3766 40 1 3.4167 3.1690 -1.6619 41 1 2.5074 2.8270 -3.1564 42 1 5.4796 3.4939 -2.9408 43 1 4.2062 4.5288 -3.6313 44 1 3.7565 2.7986 -5.3629 45 1 5.4427 3.3643 -5.4267 46 1 7.9196 2.4242 -7.0104 47 1 3.2382 0.5076 -4.4091 48 1 4.5370 -0.3917 -3.5861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397684842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = -80.210841 kcal Electronic energy + Delta-G solvation = -23567.385954 eV Core-core repulsion = 20427.499547 eV Total energy + Delta-G solvation = -3139.886407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07128 -37.30252 -36.07678 -33.86385 -33.39026 -31.43409 -30.90029 -29.88315 -26.32825 -25.32180 -24.93612 -23.25053 -22.11440 -21.64089 -20.56769 -19.19380 -18.03324 -16.70449 -16.20626 -15.83232 -15.44995 -15.08232 -14.52964 -14.20189 -13.86623 -13.54961 -13.47698 -13.33406 -13.22711 -12.80488 -12.69259 -12.18552 -12.05219 -12.00825 -11.93003 -11.86689 -11.56025 -11.01516 -10.98744 -10.97152 -10.82800 -10.74173 -10.66583 -10.58413 -10.37479 -10.15775 -10.02402 -9.71572 -9.47395 -9.11877 -8.80143 -8.36739 -7.84736 -6.03466 -4.06975 3.13420 3.29890 3.37268 3.40614 3.58942 4.43758 4.65711 4.70232 4.88739 4.97319 5.06895 5.12791 5.18306 5.27506 5.31534 5.41622 5.55408 5.58540 5.62423 5.66825 5.71083 5.74395 5.79921 5.84576 5.88806 5.93775 6.03575 6.07988 6.13332 6.24003 6.30178 6.31545 6.34460 6.41418 6.45850 6.49078 6.66290 6.80603 7.00519 7.15019 7.28168 7.68880 7.90952 7.99579 8.07361 8.37790 8.73509 8.97433 9.57055 11.05188 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.004080 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.780084 B = 6861.341565 C = 7117.188471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.110 4.110 5 C -0.102 4.102 6 C -0.124 4.124 7 C -0.152 4.152 8 C 0.516 3.484 9 O -0.550 6.550 10 N -0.604 5.604 11 C 0.109 3.891 12 C -0.136 4.136 13 C -0.105 4.105 14 C 0.039 3.961 15 H 0.035 0.965 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.117 3.883 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.078 0.922 46 H 0.260 0.740 47 H 0.052 0.948 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 2.982 15.265 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.140 4.140 6 C -0.162 4.162 7 C -0.209 4.209 8 C 0.303 3.697 9 O -0.428 6.428 10 N -0.335 5.335 11 C -0.014 4.014 12 C -0.174 4.174 13 C -0.144 4.144 14 C 0.020 3.980 15 H 0.053 0.947 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.004 4.004 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.175 2.473 15.220 18.474 hybrid contribution 0.192 -0.099 -1.140 1.160 sum -9.983 2.374 14.080 17.423 Atomic orbital electron populations 1.21757 0.96079 1.01445 1.01417 1.21611 0.95397 0.96629 1.02978 1.21572 0.92774 0.97762 1.02417 1.21426 0.97308 1.00639 0.93801 1.21463 1.01073 0.99587 0.91873 1.21585 1.00493 0.99434 0.94658 1.21761 1.00744 1.00765 0.97652 1.20446 0.77692 0.86884 0.84652 1.90650 1.46811 1.18795 1.86592 1.48308 1.66920 1.11456 1.06858 1.21773 0.98127 0.81277 1.00209 1.22005 0.98209 0.98055 0.99152 1.21551 1.00258 0.99088 0.93454 1.18974 0.93326 0.91105 0.94630 0.94657 1.21066 1.17343 1.16124 1.00881 0.92514 1.24937 0.95092 0.95207 0.98459 1.69959 1.17341 1.29725 1.35569 0.86608 0.77238 0.79475 0.84882 1.20732 1.21279 1.19813 1.21959 0.99255 0.96675 0.82486 0.93039 0.92865 0.92928 0.91441 0.91645 0.90939 0.91562 0.89197 0.90729 0.91637 0.92153 0.91877 0.93021 0.92769 0.92715 0.90919 0.92075 0.92280 0.92491 0.94401 0.90371 0.93023 0.92984 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.15 0.37 -1.11 16 2 C -0.13 -1.52 5.32 -26.73 -0.14 -1.67 16 3 C -0.11 -1.17 4.64 -26.73 -0.12 -1.30 16 4 C -0.11 -1.44 1.67 -91.77 -0.15 -1.59 16 5 C -0.10 -1.27 3.88 -26.73 -0.10 -1.37 16 6 C -0.12 -1.18 5.55 -26.73 -0.15 -1.33 16 7 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 8 C 0.52 9.20 5.55 -10.99 -0.06 9.14 16 9 O -0.55 -11.81 15.17 5.56 0.08 -11.73 16 10 N -0.60 -11.11 2.97 -172.71 -0.51 -11.62 16 11 C 0.11 1.67 5.64 -3.67 -0.02 1.65 16 12 C -0.14 -2.38 6.08 -26.61 -0.16 -2.55 16 13 C -0.11 -2.33 5.02 -26.69 -0.13 -2.47 16 14 C 0.04 0.96 2.12 -91.65 -0.19 0.77 16 15 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 16 C -0.52 -14.07 8.49 -34.44 -0.29 -14.36 16 17 H 0.06 1.53 7.76 -52.49 -0.41 1.13 16 18 C 0.06 1.79 5.24 -17.82 -0.09 1.70 16 19 N -0.89 -25.32 12.04 55.43 0.67 -24.65 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.56 5.66 -3.71 -0.02 2.54 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 29 H 0.06 0.76 6.67 -51.93 -0.35 0.41 16 30 H 0.07 0.65 6.52 -51.93 -0.34 0.31 16 31 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 32 H 0.09 1.07 6.41 -51.93 -0.33 0.74 16 33 H 0.07 1.00 6.31 -51.93 -0.33 0.67 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.90 5.30 -51.92 -0.28 0.62 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.96 6.78 -51.93 -0.35 1.61 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -29.84 361.49 -9.12 -38.96 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.87 Total: 0.31 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.91 Total: -12.93 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.15 Total: -36.28 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.84 -9.12 -38.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397684842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.248 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds