Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 C 1.52997 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47065 * 65.00154 * 4 3 2 6 6 C 1.53000 * 109.47056 * 185.49591 * 5 4 3 7 7 C 1.52998 * 109.47052 * 174.98836 * 6 5 4 8 8 C 1.50704 * 109.46888 * 185.00068 * 4 3 2 9 9 O 1.21286 * 119.99620 * 274.46450 * 8 4 3 10 10 N 1.34767 * 120.00201 * 94.46383 * 8 4 3 11 11 C 1.46936 * 120.62883 * 354.79608 * 10 8 4 12 12 C 1.53191 * 108.77486 * 233.58332 * 11 10 8 13 13 C 1.53035 * 109.31757 * 305.36963 * 12 11 10 14 14 C 1.53044 * 109.54146 * 61.35934 * 13 12 11 15 15 H 1.08999 * 109.49194 * 58.58753 * 14 13 12 16 16 C 1.50695 * 109.50058 * 178.68564 * 14 13 12 17 17 H 1.07994 * 120.00008 * 119.99884 * 16 14 13 18 18 C 1.37878 * 119.99858 * 300.00512 * 16 14 13 19 19 N 1.31517 * 120.00097 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 120.00246 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.47437 * 89.99945 * 20 18 16 22 22 H 1.48500 * 109.47246 * 210.00180 * 20 18 16 23 23 H 1.48496 * 109.47148 * 330.00021 * 20 18 16 24 24 C 1.46930 * 120.63443 * 174.77520 * 10 8 4 25 25 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47290 * 300.00108 * 1 2 3 27 27 H 1.08998 * 109.47372 * 59.99981 * 1 2 3 28 28 H 1.08998 * 109.47584 * 240.00297 * 2 1 3 29 29 H 1.08998 * 109.47372 * 120.00019 * 2 1 3 30 30 H 1.08998 * 109.46635 * 59.99716 * 3 2 1 31 31 H 1.09007 * 109.46897 * 300.00345 * 3 2 1 32 32 H 1.08998 * 109.47416 * 304.99694 * 4 3 2 33 33 H 1.08998 * 109.47275 * 305.49316 * 5 4 3 34 34 H 1.09001 * 109.47231 * 65.49368 * 5 4 3 35 35 H 1.08997 * 109.47022 * 294.99053 * 6 5 4 36 36 H 1.08994 * 109.47191 * 54.98810 * 6 5 4 37 37 H 1.08998 * 109.47221 * 299.99466 * 7 6 5 38 38 H 1.08996 * 109.47591 * 60.00213 * 7 6 5 39 39 H 1.09002 * 109.46904 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.58267 * 113.80103 * 11 10 8 41 41 H 1.08998 * 109.58839 * 353.37560 * 11 10 8 42 42 H 1.08998 * 109.49779 * 185.41209 * 12 11 10 43 43 H 1.09002 * 109.49494 * 65.32156 * 12 11 10 44 44 H 1.08996 * 109.46272 * 181.38514 * 13 12 11 45 45 H 1.09008 * 109.45488 * 301.35698 * 13 12 11 46 46 H 0.96998 * 120.00247 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.58325 * 6.62578 * 24 10 8 48 48 H 1.09003 * 109.70269 * 246.27303 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.8328 -1.3064 6 6 5.6042 0.7066 -1.2494 7 6 6.1033 -0.0163 -2.5020 8 6 4.0722 2.8580 0.1245 9 8 4.1976 3.5458 -0.8666 10 7 4.3819 3.3596 1.3364 11 6 4.1287 2.5803 2.5561 12 6 3.2956 3.4305 3.5204 13 6 4.0062 4.7640 3.7627 14 6 4.1370 5.5222 2.4398 15 1 3.1465 5.6875 2.0158 16 6 4.8079 6.8492 2.6847 17 1 5.7402 7.0820 2.1918 18 6 4.2315 7.7660 3.5381 19 7 4.8172 8.9239 3.7522 20 14 2.6186 7.3635 4.3902 21 1 2.8971 6.7011 5.6898 22 1 1.8573 8.6165 4.6263 23 1 1.8191 6.4529 3.5318 24 6 4.9796 4.6958 1.4633 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.8533 0.8427 33 1 3.6391 -0.1544 -1.4436 34 1 3.8001 1.4753 -2.1410 35 1 6.0495 1.7004 -1.2017 36 1 5.8888 0.1381 -0.3641 37 1 5.6581 -1.0101 -2.5496 38 1 5.8188 0.5521 -3.3873 39 1 7.1889 -0.1058 -2.4615 40 1 5.0769 2.3183 3.0257 41 1 3.5810 1.6726 2.3027 42 1 3.1820 2.9015 4.4666 43 1 2.3131 3.6155 3.0863 44 1 3.4277 5.3609 4.4678 45 1 4.9985 4.5773 4.1736 46 1 4.4115 9.5690 4.3523 47 1 4.9933 5.1839 0.4887 48 1 5.9978 4.6084 1.8425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397684843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -72.270362 kcal Electronic energy + Delta-G solvation = -23639.884935 eV Core-core repulsion = 20500.342853 eV Total energy + Delta-G solvation = -3139.542082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15154 -37.46236 -36.14382 -34.15923 -33.48258 -31.77207 -31.04962 -30.27694 -26.47471 -25.66673 -25.01122 -23.24789 -21.69023 -21.54123 -21.02588 -19.61573 -18.23803 -17.23540 -16.69161 -15.61838 -15.28120 -15.12045 -14.72576 -14.60923 -13.89002 -13.73529 -13.65828 -13.53663 -13.18106 -12.95506 -12.64718 -12.51988 -12.49957 -12.28717 -12.09135 -11.90676 -11.51346 -11.34210 -11.19423 -11.16957 -11.10368 -10.77668 -10.59415 -10.53742 -10.42021 -10.32235 -10.14981 -9.82794 -9.50569 -9.20920 -8.97085 -8.56687 -8.04635 -6.09901 -4.09787 2.98519 3.23141 3.35556 3.37688 3.44331 4.38193 4.52771 4.61303 4.79202 4.92479 5.01826 5.03507 5.12409 5.14979 5.20970 5.29278 5.35166 5.46481 5.50927 5.54432 5.57089 5.65710 5.72105 5.78178 5.80775 5.85844 5.90325 5.98961 6.00230 6.01791 6.06655 6.13251 6.20516 6.20975 6.30531 6.33443 6.37980 6.53462 6.69910 6.74572 6.88420 7.14858 7.46960 7.72934 7.89939 8.46976 8.60321 8.93501 9.51842 11.03195 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004882 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.764845 B = 5734.103178 C = 6603.097678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.110 4.110 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.148 4.148 8 C 0.516 3.484 9 O -0.546 6.546 10 N -0.608 5.608 11 C 0.109 3.891 12 C -0.139 4.139 13 C -0.122 4.122 14 C 0.006 3.994 15 H 0.029 0.971 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.264 0.736 47 H 0.085 0.915 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -21.244 -5.078 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.131 4.131 5 C -0.141 4.141 6 C -0.165 4.165 7 C -0.206 4.206 8 C 0.304 3.696 9 O -0.423 6.423 10 N -0.341 5.341 11 C -0.014 4.014 12 C -0.177 4.177 13 C -0.160 4.160 14 C -0.014 4.014 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.006 3.994 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.337 -20.688 -5.514 21.845 hybrid contribution -0.849 0.000 0.857 1.206 sum -5.186 -20.687 -4.657 21.830 Atomic orbital electron populations 1.21774 0.95825 1.01429 1.02035 1.21574 0.95854 0.96393 1.02150 1.21544 0.92622 0.97409 1.03195 1.21466 0.97059 0.94202 1.00362 1.21556 0.95436 1.00575 0.96564 1.21561 0.95781 1.01179 0.98006 1.21729 1.00663 1.00018 0.98172 1.20501 0.77374 0.88788 0.82957 1.90659 1.53958 1.60981 1.36727 1.48346 1.61624 1.18692 1.05413 1.21722 0.99787 0.94081 0.85800 1.21999 0.99410 0.97958 0.98305 1.21984 0.99664 0.93911 1.00393 1.19453 0.96574 0.94375 0.90985 0.95257 1.20917 1.09410 0.97531 1.27373 0.90627 1.24979 0.97029 0.94761 0.96227 1.69894 1.39456 1.07299 1.37056 0.86828 0.84465 0.76801 0.80019 1.20593 1.22515 1.19146 1.21745 0.96058 0.80069 1.01556 0.92846 0.92676 0.92696 0.91584 0.91972 0.91464 0.91070 0.89338 0.91268 0.90660 0.91597 0.92406 0.93029 0.92692 0.92953 0.91627 0.90438 0.91779 0.92173 0.93249 0.91952 0.92606 0.89691 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.04 5.70 -26.73 -0.15 -1.19 16 3 C -0.11 -1.22 4.56 -26.73 -0.12 -1.34 16 4 C -0.11 -1.33 1.39 -91.77 -0.13 -1.46 16 5 C -0.10 -1.17 4.32 -26.73 -0.12 -1.28 16 6 C -0.13 -1.44 5.67 -26.73 -0.15 -1.59 16 7 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 8 C 0.52 8.72 5.84 -10.99 -0.06 8.66 16 9 O -0.55 -11.29 15.36 5.55 0.09 -11.21 16 10 N -0.61 -10.53 2.97 -172.76 -0.51 -11.05 16 11 C 0.11 1.52 6.15 -3.71 -0.02 1.50 16 12 C -0.14 -2.19 6.08 -26.61 -0.16 -2.35 16 13 C -0.12 -2.49 4.66 -26.69 -0.12 -2.62 16 14 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 15 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 16 C -0.51 -14.33 9.15 -34.44 -0.32 -14.65 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 19 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 20 Si 0.89 21.89 24.39 -169.99 -4.15 17.74 16 21 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 22 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.27 -6.35 6.53 56.52 0.37 -5.99 16 24 C 0.13 2.64 5.66 -3.71 -0.02 2.62 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.52 6.45 -51.93 -0.34 0.19 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.09 0.92 6.20 -51.93 -0.32 0.60 16 33 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 34 H 0.07 0.99 7.66 -51.93 -0.40 0.59 16 35 H 0.07 0.92 7.40 -51.93 -0.38 0.54 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.86 5.50 -51.93 -0.29 0.57 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.09 3.25 -51.93 -0.17 0.92 16 45 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.08 1.94 7.00 -51.93 -0.36 1.58 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -31.46 358.83 -8.20 -39.66 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.90 Total: -0.18 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.91 Total: -13.70 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.26 Total: -37.72 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.46 -8.20 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397684843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.607 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds