Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.89699 * 2 1 4 4 C 1.54389 * 109.82641 * 120.92886 * 2 1 3 5 5 C 1.55299 * 102.25084 * 98.15941 * 4 2 1 6 6 C 1.54942 * 100.94499 * 34.13079 * 5 4 2 7 7 H 1.09000 * 110.30923 * 82.57441 * 6 5 4 8 8 C 1.52999 * 110.31137 * 204.64157 * 6 5 4 9 9 N 1.46899 * 109.47475 * 178.48292 * 8 6 5 10 10 C 1.46843 * 111.00491 * 176.24008 * 9 8 6 11 11 C 1.53039 * 109.52733 * 174.16025 * 10 9 8 12 12 C 1.53125 * 109.27753 * 59.17827 * 11 10 9 13 13 C 1.52995 * 109.52242 * 182.44514 * 12 11 10 14 14 C 1.50696 * 109.47041 * 185.00399 * 13 12 11 15 15 H 1.08001 * 120.00298 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47291 * 89.99568 * 18 16 14 20 20 H 1.48493 * 109.47146 * 209.99719 * 18 16 14 21 21 H 1.48507 * 109.47160 * 329.99747 * 18 16 14 22 22 C 1.53120 * 109.15986 * 302.34951 * 12 11 10 23 23 C 1.46846 * 111.00031 * 52.02727 * 9 8 6 24 24 O 1.43229 * 109.83354 * 239.06061 * 2 1 3 25 25 H 1.09003 * 109.47380 * 299.07413 * 1 2 3 26 26 H 1.09004 * 109.46965 * 59.06918 * 1 2 3 27 27 H 1.08996 * 109.47114 * 179.06922 * 1 2 3 28 28 H 1.09004 * 109.47605 * 180.93120 * 3 2 1 29 29 H 1.09003 * 109.47269 * 300.92570 * 3 2 1 30 30 H 1.09005 * 109.47889 * 60.92940 * 3 2 1 31 31 H 1.08999 * 110.84669 * 339.96408 * 4 2 1 32 32 H 1.08999 * 110.84389 * 216.35024 * 4 2 1 33 33 H 1.09010 * 111.12663 * 276.20978 * 5 4 2 34 34 H 1.09001 * 111.16418 * 152.06564 * 5 4 2 35 35 H 1.08995 * 109.47345 * 58.47931 * 8 6 5 36 36 H 1.09007 * 109.47250 * 298.48517 * 8 6 5 37 37 H 1.09005 * 109.46027 * 54.13862 * 10 9 8 38 38 H 1.09008 * 109.45291 * 294.17084 * 10 9 8 39 39 H 1.08995 * 109.49856 * 299.24263 * 11 10 9 40 40 H 1.08993 * 109.53592 * 179.13806 * 11 10 9 41 41 H 1.09003 * 109.51850 * 62.24878 * 12 11 10 42 42 H 1.09003 * 109.46636 * 304.99365 * 13 12 11 43 43 H 1.08992 * 109.47485 * 64.99865 * 13 12 11 44 44 H 0.96996 * 120.00184 * 179.97438 * 17 16 14 45 45 H 1.08997 * 109.50316 * 177.59729 * 22 12 11 46 46 H 1.09000 * 109.50270 * 297.71360 * 22 12 11 47 47 H 1.09002 * 109.46459 * 305.85916 * 23 9 8 48 48 H 1.08998 * 109.46289 * 65.82546 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4386 0.0000 4 6 2.0537 -0.7465 1.2459 5 6 2.3681 -2.1569 0.6770 6 6 2.8407 -1.7982 -0.7543 7 1 3.8905 -1.5048 -0.7436 8 6 2.6319 -2.9859 -1.6959 9 7 3.0517 -2.6142 -3.0537 10 6 2.9491 -3.7585 -3.9681 11 6 3.2531 -3.3008 -5.3965 12 6 4.6639 -2.7076 -5.4477 13 6 4.9510 -2.1926 -6.8595 14 6 6.3801 -1.7216 -6.9414 15 1 7.0196 -1.7830 -6.0732 16 6 6.8711 -1.2114 -8.1244 17 7 6.0923 -1.1361 -9.1815 18 14 8.6424 -0.6269 -8.2257 19 1 9.5134 -1.7561 -8.6397 20 1 8.7457 0.4691 -9.2223 21 1 9.0763 -0.1290 -6.8956 22 6 4.7582 -1.5488 -4.4513 23 6 4.4105 -2.0573 -3.0504 24 8 2.0160 -0.6927 -1.1556 25 1 -0.3634 0.4994 0.8982 26 1 -0.3633 0.5282 -0.8816 27 1 -0.3633 -1.0275 -0.0167 28 1 3.1406 1.4306 -0.0167 29 1 1.6777 1.9600 -0.8816 30 1 1.7049 1.9503 0.8982 31 1 1.2850 -0.8015 2.0167 32 1 2.9570 -0.2731 1.6305 33 1 1.4729 -2.7785 0.6509 34 1 3.1634 -2.6414 1.2434 35 1 1.5774 -3.2618 -1.7044 36 1 3.2260 -3.8321 -1.3507 37 1 1.9399 -4.1684 -3.9251 38 1 3.6653 -4.5251 -3.6722 39 1 2.5290 -2.5440 -5.6979 40 1 3.1920 -4.1531 -6.0731 41 1 5.3915 -3.4751 -5.1838 42 1 4.7915 -2.9961 -7.5786 43 1 4.2815 -1.3632 -7.0869 44 1 6.4376 -0.7768 -10.0137 45 1 5.7725 -1.1497 -4.4522 46 1 4.0577 -0.7644 -4.7379 47 1 4.4629 -1.2315 -2.3409 48 1 5.1197 -2.8319 -2.7589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399291676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = -69.235232 kcal Electronic energy + Delta-G solvation = -23201.090493 eV Core-core repulsion = 20061.680023 eV Total energy + Delta-G solvation = -3139.410469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15282 -38.45244 -34.84463 -33.18025 -32.40270 -31.75376 -30.29782 -28.66472 -27.48451 -26.61730 -24.14080 -22.85299 -22.63772 -21.11276 -20.50416 -19.87080 -18.80209 -16.83872 -16.19075 -15.65203 -15.59796 -14.79305 -14.43716 -14.34555 -14.08929 -13.78523 -13.47692 -13.32248 -13.16862 -12.75160 -12.68789 -12.33791 -12.19809 -11.89650 -11.86174 -11.74135 -11.67170 -11.54715 -11.11816 -10.90317 -10.83457 -10.72844 -10.71338 -10.53742 -10.48328 -10.17756 -9.87456 -9.53352 -9.36768 -8.93294 -8.79793 -8.26550 -7.91825 -5.91584 -3.92689 3.36102 3.42380 3.45515 3.59719 4.17325 4.29181 4.52270 4.58262 4.61556 4.84215 4.99443 5.01861 5.24357 5.30284 5.37342 5.43688 5.44532 5.45483 5.49056 5.50645 5.56668 5.64222 5.70232 5.73076 5.77473 5.81800 5.87025 5.98481 6.01339 6.06450 6.12628 6.15645 6.23868 6.35699 6.54680 6.69924 6.77660 7.08340 7.14862 7.22471 7.30011 7.47861 7.52467 7.77619 7.95595 8.10080 8.53302 9.13973 9.70324 11.19864 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.003553 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.163462 B = 7878.027612 C = 8368.478867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.096 3.904 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.152 4.152 6 C 0.082 3.918 7 H 0.072 0.928 8 C 0.059 3.941 9 N -0.526 5.526 10 C 0.060 3.940 11 C -0.111 4.111 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.098 4.098 23 C 0.053 3.947 24 O -0.345 6.345 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.017 0.983 44 H 0.259 0.741 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 -1.226 22.145 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.056 3.944 3 C -0.211 4.211 4 C -0.183 4.183 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.090 0.910 8 C -0.070 4.070 9 N -0.250 5.250 10 C -0.068 4.068 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.136 4.136 23 C -0.075 4.075 24 O -0.264 6.264 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.384 -0.744 21.571 23.952 hybrid contribution 1.610 -0.376 0.351 1.690 sum -8.774 -1.121 21.922 23.640 Atomic orbital electron populations 1.22049 0.94274 1.02333 1.02086 1.22079 0.94116 0.92652 0.85537 1.22094 1.01573 0.95291 1.02166 1.23192 1.01846 0.95378 0.97894 1.23286 1.02185 0.97398 0.96146 1.23066 0.95142 0.87296 0.92126 0.91017 1.22228 1.01093 0.94531 0.89112 1.61917 1.25523 1.31253 1.06348 1.22102 0.99668 0.90924 0.94102 1.21676 0.99018 1.00509 0.93691 1.21233 0.93759 0.96281 0.98703 1.19112 0.96334 0.96017 0.89431 1.21266 0.96950 1.40581 0.96311 0.92752 1.25017 0.97377 0.96155 0.95965 1.69966 1.35578 1.46560 1.01519 0.86661 0.85559 0.78397 0.77770 1.20828 1.21313 1.19938 1.21519 1.01620 0.98617 0.91810 1.22280 0.87416 0.98106 0.99663 1.88647 1.66717 1.42650 1.28370 0.92016 0.91794 0.92323 0.92231 0.91714 0.91970 0.90226 0.90578 0.90354 0.90192 0.90537 0.94346 0.91801 0.95669 0.91561 0.92272 0.93217 0.96843 0.96474 0.93145 0.91134 0.91787 0.91189 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.73 37.16 0.32 -1.04 16 2 C 0.10 0.98 1.27 -89.89 -0.11 0.87 16 3 C -0.15 -1.48 8.75 37.15 0.32 -1.16 16 4 C -0.15 -1.18 6.09 -24.78 -0.15 -1.33 16 5 C -0.15 -1.30 6.57 -24.49 -0.16 -1.46 16 6 C 0.08 0.95 2.88 -25.71 -0.07 0.88 16 7 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 8 C 0.06 0.74 4.85 -3.82 -0.02 0.72 16 9 N -0.53 -8.27 4.70 -234.67 -1.10 -9.38 16 10 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 11 C -0.11 -2.04 5.38 -26.65 -0.14 -2.19 16 12 C -0.08 -1.73 2.20 -90.50 -0.20 -1.93 16 13 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 14 C -0.51 -14.64 8.45 -34.44 -0.29 -14.93 16 15 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.10 -1.96 5.15 -26.65 -0.14 -2.09 16 23 C 0.05 0.87 5.05 -3.84 -0.02 0.85 16 24 O -0.34 -4.69 10.29 -35.23 -0.36 -5.05 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.53 7.82 -51.93 -0.41 0.12 16 32 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 33 H 0.08 0.63 8.06 -51.92 -0.42 0.21 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.48 7.05 -51.93 -0.37 1.12 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.07 1.10 5.83 -51.93 -0.30 0.80 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -31.13 364.60 -10.50 -41.63 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -9.34 Total: -3.18 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -0.90 Total: -19.76 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.37 Total: -36.12 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.36 Total: -5.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.13 -10.50 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399291676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.607 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds