Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.82210 * 2 1 4 4 C 1.54383 * 109.82896 * 239.02527 * 2 1 3 5 5 C 1.55308 * 102.25142 * 261.83928 * 4 2 1 6 6 C 1.54947 * 100.94249 * 325.86885 * 5 4 2 7 7 H 1.09003 * 110.39224 * 277.48777 * 6 5 4 8 8 C 1.52998 * 110.31049 * 155.35841 * 6 5 4 9 9 N 1.46905 * 109.47113 * 179.59552 * 8 6 5 10 10 C 1.46848 * 110.99735 * 311.89758 * 9 8 6 11 11 C 1.53046 * 109.51744 * 185.83685 * 10 9 8 12 12 C 1.53118 * 109.27839 * 300.82433 * 11 10 9 13 13 C 1.53003 * 109.51808 * 177.56256 * 12 11 10 14 14 C 1.50703 * 109.46794 * 175.00014 * 13 12 11 15 15 H 1.07996 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99799 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99720 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46782 * 90.00575 * 18 16 14 20 20 H 1.48501 * 109.47070 * 209.99710 * 18 16 14 21 21 H 1.48491 * 109.47448 * 330.00354 * 18 16 14 22 22 C 1.53113 * 109.16338 * 57.65634 * 12 11 10 23 23 C 1.46838 * 110.99601 * 76.10866 * 9 8 6 24 24 O 1.43240 * 109.83522 * 120.88894 * 2 1 3 25 25 H 1.09000 * 109.46953 * 300.55921 * 1 2 3 26 26 H 1.08992 * 109.47449 * 60.56199 * 1 2 3 27 27 H 1.09008 * 109.46669 * 180.56931 * 1 2 3 28 28 H 1.08997 * 109.47319 * 179.43170 * 3 2 1 29 29 H 1.09002 * 109.47540 * 299.43738 * 3 2 1 30 30 H 1.09004 * 109.47148 * 59.43937 * 3 2 1 31 31 H 1.09000 * 110.85122 * 20.03254 * 4 2 1 32 32 H 1.09004 * 110.84964 * 143.45055 * 4 2 1 33 33 H 1.09002 * 111.12357 * 207.94683 * 5 4 2 34 34 H 1.09001 * 111.12396 * 83.78692 * 5 4 2 35 35 H 1.09002 * 109.46638 * 59.59776 * 8 6 5 36 36 H 1.08999 * 109.47425 * 299.60226 * 8 6 5 37 37 H 1.09000 * 109.46386 * 65.82747 * 10 9 8 38 38 H 1.08991 * 109.46302 * 305.85269 * 10 9 8 39 39 H 1.09000 * 109.49547 * 180.87934 * 11 10 9 40 40 H 1.09004 * 109.49822 * 60.76671 * 11 10 9 41 41 H 1.09004 * 109.52212 * 297.74911 * 12 11 10 42 42 H 1.09002 * 109.46885 * 294.99383 * 13 12 11 43 43 H 1.09001 * 109.47435 * 54.99803 * 13 12 11 44 44 H 0.97004 * 120.00013 * 180.02562 * 17 16 14 45 45 H 1.08997 * 109.50641 * 62.28332 * 22 12 11 46 46 H 1.09004 * 109.50626 * 182.40679 * 22 12 11 47 47 H 1.09001 * 109.46509 * 54.14381 * 23 9 8 48 48 H 1.09004 * 109.46821 * 294.17565 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0537 -0.7474 -1.2452 5 6 2.3681 -2.1575 -0.6751 6 6 2.8408 -1.7975 0.7559 7 1 3.8902 -1.5028 0.7464 8 6 2.6319 -2.9844 1.6985 9 7 3.0945 -2.6268 3.0461 10 6 4.4273 -2.0121 2.9991 11 6 4.9371 -1.7869 4.4245 12 6 3.9602 -0.8756 5.1727 13 6 4.4326 -0.6958 6.6168 14 6 3.5409 0.2969 7.3171 15 1 2.7197 0.7542 6.7852 16 6 3.7735 0.6214 8.6368 17 7 4.7738 0.0649 9.2843 18 14 2.6686 1.8524 9.5046 19 1 1.5328 1.1366 10.1394 20 1 3.4475 2.5678 10.5471 21 1 2.1470 2.8314 8.5174 22 6 2.5694 -1.5159 5.1652 23 6 2.1282 -1.7490 3.7184 24 8 2.0160 -0.6917 1.1563 25 1 -0.3633 0.5225 0.8849 26 1 -0.3634 0.5050 -0.8949 27 1 -0.3633 -1.0277 0.0102 28 1 3.1387 1.4327 0.0102 29 1 1.6969 1.9525 -0.8950 30 1 1.6804 1.9583 0.8849 31 1 1.2850 -0.8032 -2.0160 32 1 2.9551 -0.2723 -1.6323 33 1 3.1637 -2.6417 -1.2415 34 1 1.4731 -2.7790 -0.6485 35 1 3.1994 -3.8412 1.3350 36 1 1.5726 -3.2387 1.7334 37 1 4.3681 -1.0559 2.4793 38 1 5.1131 -2.6722 2.4682 39 1 5.9196 -1.3163 4.3893 40 1 5.0097 -2.7443 4.9405 41 1 3.9168 0.0953 4.6791 42 1 4.3879 -1.6535 7.1356 43 1 5.4587 -0.3282 6.6203 44 1 4.9372 0.2929 10.2129 45 1 2.6047 -2.4690 5.6929 46 1 1.8602 -0.8518 5.6593 47 1 1.1443 -2.2180 3.7098 48 1 2.0797 -0.7940 3.1952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399291677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -70.217330 kcal Electronic energy + Delta-G solvation = -23671.466933 eV Core-core repulsion = 20532.013877 eV Total energy + Delta-G solvation = -3139.453056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31491 -38.33544 -34.85903 -33.07718 -32.45309 -31.73200 -30.21063 -28.62839 -27.50257 -26.46596 -24.28396 -22.72451 -22.42273 -21.66955 -20.30071 -19.97119 -18.63790 -16.84717 -16.16778 -15.74367 -15.44388 -14.71682 -14.49986 -14.40894 -13.89888 -13.73168 -13.47847 -13.37864 -13.16540 -12.82073 -12.55344 -12.28565 -12.07208 -11.86375 -11.78664 -11.71515 -11.62122 -11.56457 -11.26170 -11.02187 -10.94870 -10.74952 -10.61575 -10.47936 -10.34778 -10.13729 -9.81143 -9.60417 -9.39532 -8.92182 -8.76879 -8.24769 -7.81904 -5.89837 -3.90551 3.37684 3.43696 3.47332 3.53902 4.25029 4.39135 4.54053 4.54309 4.58559 4.81178 4.97425 4.99941 5.24300 5.33105 5.37959 5.43735 5.45318 5.45808 5.47886 5.54811 5.60807 5.68916 5.70911 5.74502 5.80604 5.87870 5.97972 5.99858 6.03662 6.12649 6.13288 6.24825 6.33555 6.53651 6.60214 6.74519 6.81927 7.09440 7.12874 7.25862 7.34306 7.50585 7.57504 7.80129 7.97872 8.12112 8.56030 9.16232 9.72415 11.21662 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.004116 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.207679 B = 6801.344605 C = 7536.912005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.148 4.148 6 C 0.043 3.957 7 H 0.072 0.928 8 C 0.058 3.942 9 N -0.531 5.531 10 C 0.057 3.943 11 C -0.111 4.111 12 C -0.079 4.079 13 C 0.028 3.972 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.100 4.100 23 C 0.055 3.945 24 O -0.355 6.355 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.258 0.742 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -3.775 -22.980 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 C -0.212 4.212 4 C -0.183 4.183 5 C -0.186 4.186 6 C -0.016 4.016 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.071 4.071 11 C -0.149 4.149 12 C -0.098 4.098 13 C -0.009 4.009 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.138 4.138 23 C -0.073 4.073 24 O -0.275 6.275 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.503 -4.146 -22.297 23.337 hybrid contribution -0.550 1.396 -0.152 1.508 sum -6.053 -2.750 -22.449 23.413 Atomic orbital electron populations 1.22055 0.94245 1.02314 1.02195 1.22090 0.94082 0.92598 0.85489 1.22096 1.01509 0.95293 1.02260 1.23174 1.01782 0.95551 0.97778 1.23244 1.02080 0.97199 0.96122 1.23870 0.95315 0.88470 0.93986 0.90983 1.22433 1.01457 0.95150 0.88078 1.62137 1.03014 1.44539 1.15692 1.22124 0.89845 0.96839 0.98280 1.21684 0.98628 1.00617 0.93999 1.21200 0.93550 0.96260 0.98783 1.19123 0.96090 0.96758 0.88959 1.21277 1.13566 1.24068 0.96015 0.92720 1.25010 0.95371 0.96446 0.97684 1.69969 1.29573 1.43725 1.10475 0.86668 0.80709 0.81616 0.79452 1.20751 1.21365 1.19970 1.21552 0.97868 1.00722 0.93632 1.22309 0.93780 0.95410 0.95752 1.88610 1.66960 1.43092 1.28873 0.91790 0.91948 0.92322 0.92316 0.91922 0.91696 0.90312 0.90689 0.90248 0.90394 0.89996 0.90645 0.94734 0.92192 0.92424 0.91828 0.93102 0.96596 0.96897 0.93189 0.92353 0.91225 0.92431 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.73 37.16 0.32 -1.09 16 2 C 0.10 1.00 1.27 -89.90 -0.11 0.89 16 3 C -0.15 -1.56 8.75 37.16 0.32 -1.24 16 4 C -0.15 -1.20 6.09 -24.78 -0.15 -1.35 16 5 C -0.15 -1.25 6.57 -24.48 -0.16 -1.41 16 6 C 0.04 0.48 2.77 -25.70 -0.07 0.41 16 7 H 0.07 0.86 6.33 -51.93 -0.33 0.54 16 8 C 0.06 0.70 5.34 -3.82 -0.02 0.68 16 9 N -0.53 -8.19 4.86 -234.67 -1.14 -9.33 16 10 C 0.06 0.88 4.49 -3.83 -0.02 0.87 16 11 C -0.11 -2.06 5.38 -26.65 -0.14 -2.20 16 12 C -0.08 -1.72 2.20 -90.50 -0.20 -1.91 16 13 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.71 8.44 -34.44 -0.29 -15.00 16 15 H 0.05 1.54 7.08 -52.49 -0.37 1.17 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.10 -2.02 5.15 -26.65 -0.14 -2.16 16 23 C 0.05 0.93 4.99 -3.83 -0.02 0.91 16 24 O -0.36 -4.68 7.58 -35.23 -0.27 -4.95 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.54 7.82 -51.93 -0.41 0.14 16 32 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.62 8.06 -51.93 -0.42 0.21 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 37 H 0.03 0.55 6.53 -51.93 -0.34 0.21 16 38 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.50 7.06 -51.93 -0.37 1.13 16 47 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 48 H 0.05 0.98 5.75 -51.93 -0.30 0.68 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -30.93 359.37 -10.41 -41.34 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -9.23 Total: -2.30 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -0.90 Total: -20.47 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.40 Total: -36.20 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.27 Total: -4.95 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.93 -10.41 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399291677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.878 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds