Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99754 * 2 1 4 4 H 1.48502 * 109.46961 * 270.00037 * 3 2 1 5 5 H 1.48492 * 109.47452 * 30.00192 * 3 2 1 6 6 H 1.48508 * 109.46943 * 150.00281 * 3 2 1 7 7 C 1.37872 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00039 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52080 * 174.99881 * 10 9 7 12 12 C 1.53039 * 109.28057 * 177.56006 * 11 10 9 13 13 N 1.46853 * 109.52309 * 300.82382 * 12 11 10 14 14 C 1.46900 * 111.00072 * 185.83843 * 13 12 11 15 15 C 1.53005 * 109.46966 * 75.77611 * 14 13 12 16 16 H 1.08997 * 109.47074 * 304.56417 * 15 14 13 17 17 C 1.52997 * 109.46661 * 64.56551 * 15 14 13 18 18 C 1.53009 * 109.46923 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47097 * 300.00172 * 18 17 15 20 20 C 1.52997 * 109.47237 * 59.99736 * 19 18 17 21 21 C 1.53003 * 109.46512 * 184.56291 * 15 14 13 22 22 H 1.08997 * 109.47554 * 299.99832 * 21 15 14 23 23 O 1.42900 * 109.47433 * 60.00706 * 21 15 14 24 24 C 1.46845 * 111.19744 * 61.73679 * 13 12 11 25 25 C 1.53031 * 109.52781 * 298.26085 * 24 13 12 26 26 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46852 * 59.99815 * 9 7 2 28 28 H 1.08994 * 109.47053 * 299.99513 * 9 7 2 29 29 H 1.08995 * 109.52473 * 54.87478 * 10 9 7 30 30 H 1.09003 * 109.50466 * 57.61952 * 11 10 9 31 31 H 1.08998 * 109.50394 * 297.50470 * 11 10 9 32 32 H 1.09000 * 109.46590 * 180.80606 * 12 11 10 33 33 H 1.09005 * 109.45413 * 60.83030 * 12 11 10 34 34 H 1.09001 * 109.47132 * 315.78138 * 14 13 12 35 35 H 1.08993 * 109.47308 * 195.77922 * 14 13 12 36 36 H 1.08994 * 109.47522 * 299.99651 * 17 15 14 37 37 H 1.08997 * 109.47486 * 60.00118 * 17 15 14 38 38 H 1.08992 * 109.47140 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.46563 * 60.00018 * 18 17 15 40 40 H 1.09003 * 109.47004 * 299.99751 * 19 18 17 41 41 H 1.08998 * 109.47194 * 179.97438 * 19 18 17 42 42 H 1.08997 * 109.47254 * 59.99645 * 20 19 18 43 43 H 1.08994 * 109.47384 * 179.97438 * 20 19 18 44 44 H 0.96694 * 113.99872 * 180.02562 * 23 21 15 45 45 H 1.09000 * 109.46117 * 58.27828 * 24 13 12 46 46 H 1.09006 * 109.46111 * 178.23917 * 24 13 12 47 47 H 1.09009 * 109.50315 * 299.23960 * 25 24 13 48 48 H 1.08997 * 109.50742 * 179.11937 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0215 -2.6364 -0.0010 11 6 5.5475 -2.6397 -0.1274 12 6 6.0567 -4.0815 -0.0655 13 7 5.6517 -4.6907 1.2079 14 6 6.2400 -6.0279 1.3624 15 6 7.7203 -5.8950 1.7259 16 1 8.2258 -5.2886 0.9744 17 6 7.8509 -5.2244 3.0948 18 6 9.3312 -5.0920 3.4586 19 6 9.9705 -6.4812 3.5081 20 6 9.8397 -7.1518 2.1391 21 6 8.3599 -7.2840 1.7752 22 1 7.8543 -7.8905 2.5266 23 8 8.2379 -7.9104 0.4966 24 6 4.1893 -4.7417 1.3308 25 6 3.6245 -3.3196 1.3106 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.5854 -3.1771 -0.8409 30 1 5.9817 -2.0650 0.6908 31 1 5.8348 -2.1928 -1.0792 32 1 7.1440 -4.0863 -0.1408 33 1 5.6328 -4.6520 -0.8920 34 1 6.1438 -6.5776 0.4260 35 1 5.7182 -6.5651 2.1543 36 1 7.3952 -4.2349 3.0597 37 1 7.3453 -5.8308 3.8463 38 1 9.4243 -4.6139 4.4337 39 1 9.8371 -4.4858 2.7073 40 1 9.4645 -7.0875 4.2595 41 1 11.0251 -6.3869 3.7668 42 1 10.3456 -6.5456 1.3878 43 1 10.2955 -8.1413 2.1742 44 1 8.6223 -8.7966 0.4545 45 1 3.7744 -5.3091 0.4978 46 1 3.9204 -5.2260 2.2696 47 1 4.0283 -2.7555 2.1514 48 1 2.5378 -3.3584 1.3861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399308282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = -88.051940 kcal Electronic energy + Delta-G solvation = -23151.192788 eV Core-core repulsion = 20010.966365 eV Total energy + Delta-G solvation = -3140.226423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73550 -38.32122 -35.76404 -34.69089 -32.48568 -31.18044 -30.33643 -29.80115 -28.18441 -25.25360 -23.39693 -22.68978 -22.44864 -21.11165 -20.33536 -19.83265 -18.91050 -17.44153 -16.65969 -15.83541 -15.51682 -14.93546 -14.47639 -14.25353 -14.20574 -14.02273 -13.71675 -13.46525 -13.15360 -13.03142 -12.81358 -12.60643 -12.23337 -11.91661 -11.82330 -11.62864 -11.52539 -11.32754 -11.05273 -10.93787 -10.75861 -10.65076 -10.54010 -10.49671 -10.23955 -10.05784 -9.93587 -9.65736 -9.52703 -9.17587 -8.93575 -8.47050 -7.99013 -5.98080 -3.94641 3.35163 3.42485 3.47300 3.95149 4.09556 4.46448 4.51199 4.55145 4.79212 4.88829 5.02800 5.14709 5.23165 5.26396 5.31641 5.35681 5.40557 5.41011 5.51940 5.57473 5.64460 5.75057 5.78208 5.82373 5.87141 5.89478 5.98839 6.01903 6.02571 6.09963 6.16454 6.26690 6.32467 6.36569 6.43916 6.57248 6.65080 6.93043 7.02723 7.11071 7.33698 7.39988 7.42491 7.48550 7.58617 7.87947 8.61714 9.07441 9.65484 11.15458 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.003355 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.200753 B = 8342.824840 C = 8659.673762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.062 3.938 15 C -0.070 4.070 16 H 0.076 0.924 17 C -0.105 4.105 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.108 3.892 22 H 0.052 0.948 23 O -0.566 6.566 24 C 0.057 3.943 25 C -0.100 4.100 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.009 0.991 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.373 0.627 45 H 0.027 0.973 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.381 -15.603 5.931 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.259 5.259 14 C -0.066 4.066 15 C -0.089 4.089 16 H 0.094 0.906 17 C -0.142 4.142 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.187 4.187 21 C 0.049 3.951 22 H 0.070 0.930 23 O -0.371 6.371 24 C -0.071 4.071 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.220 0.780 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.090 -14.616 6.170 25.599 hybrid contribution 0.360 -0.168 -0.558 0.685 sum 20.450 -14.785 5.612 25.851 Atomic orbital electron populations 1.69917 1.06285 1.26719 1.51709 1.25032 0.94690 0.99106 0.94793 0.86801 0.80433 0.83787 0.78395 1.20464 1.21547 1.18981 1.21172 0.89582 0.94264 1.50039 0.90987 1.19610 0.97010 0.91907 0.96072 1.21043 0.92524 0.98691 0.96888 1.21722 0.97509 0.94723 1.01227 1.22095 0.99333 0.95973 0.89353 1.61912 1.09767 1.20069 1.34200 1.22038 0.94100 0.90135 1.00375 1.21095 0.95567 0.93726 0.98547 0.90589 1.21472 0.95352 1.02314 0.95075 1.21609 0.96524 0.96432 1.01568 1.21491 1.00647 0.96838 0.96480 1.22240 0.97266 1.00973 0.98254 1.21863 0.94288 0.94299 0.84632 0.92956 1.86565 1.82930 1.34309 1.33257 1.22185 0.86360 0.98781 0.99727 1.21540 1.00950 0.92969 0.98274 0.92892 0.96586 0.97285 0.92533 0.91733 0.92332 0.91682 0.95420 0.94027 0.91641 0.89619 0.92393 0.91899 0.91991 0.92004 0.92034 0.91221 0.92088 0.78037 0.95492 0.91657 0.91985 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.51 -14.63 9.00 -34.44 -0.31 -14.94 16 8 H 0.07 2.20 7.33 -52.48 -0.38 1.81 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.47 2.20 -90.50 -0.20 -1.67 16 11 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 12 C 0.06 0.90 5.29 -3.83 -0.02 0.88 16 13 N -0.53 -7.74 4.02 -234.66 -0.94 -8.69 16 14 C 0.06 0.77 4.32 -3.82 -0.02 0.75 16 15 C -0.07 -0.76 1.98 -90.62 -0.18 -0.94 16 16 H 0.08 0.92 6.71 -51.93 -0.35 0.58 16 17 C -0.10 -1.05 5.09 -26.73 -0.14 -1.19 16 18 C -0.12 -1.05 5.92 -26.72 -0.16 -1.21 16 19 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 20 C -0.15 -1.13 5.54 -26.75 -0.15 -1.27 16 21 C 0.11 0.97 2.90 -26.75 -0.08 0.90 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 O -0.57 -5.43 12.57 -35.23 -0.44 -5.87 16 24 C 0.06 0.90 5.43 -3.84 -0.02 0.88 16 25 C -0.10 -1.88 5.15 -26.65 -0.14 -2.02 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.57 7.40 -51.93 -0.38 0.19 16 35 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 36 H 0.09 1.02 7.74 -51.93 -0.40 0.62 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.37 1.99 9.08 45.56 0.41 2.40 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 47 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 48 H 0.08 1.60 7.05 -51.93 -0.37 1.23 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -31.09 356.63 -10.29 -41.38 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.49 Total: -0.73 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.90 Total: -21.43 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.17 Total: -36.20 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.44 Total: -5.87 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.09 -10.29 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399308282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.668 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds