Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99659 * 2 1 4 4 H 1.48505 * 109.47329 * 269.99433 * 3 2 1 5 5 H 1.48495 * 109.47434 * 29.99934 * 3 2 1 6 6 H 1.48507 * 109.46852 * 149.99953 * 3 2 1 7 7 C 1.37869 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00128 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52259 * 185.00251 * 10 9 7 12 12 C 1.53040 * 109.27338 * 182.43740 * 11 10 9 13 13 N 1.46851 * 109.52569 * 59.17967 * 12 11 10 14 14 C 1.46901 * 111.00216 * 174.15795 * 13 12 11 15 15 C 1.52999 * 109.46929 * 176.22526 * 14 13 12 16 16 H 1.08992 * 109.47056 * 301.90470 * 15 14 13 17 17 C 1.52995 * 109.46889 * 181.90882 * 15 14 13 18 18 C 1.53002 * 109.47245 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47109 * 59.99875 * 18 17 15 20 20 C 1.53005 * 109.46766 * 300.00163 * 19 18 17 21 21 C 1.52995 * 109.47172 * 61.90817 * 15 14 13 22 22 H 1.09004 * 109.47206 * 299.99529 * 21 15 14 23 23 O 1.42898 * 109.47740 * 59.99948 * 21 15 14 24 24 C 1.46846 * 111.19528 * 298.25790 * 13 12 11 25 25 C 1.53039 * 109.52635 * 61.73834 * 24 13 12 26 26 H 0.96996 * 119.99644 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47222 * 60.00480 * 9 7 2 28 28 H 1.09001 * 109.47196 * 300.00351 * 9 7 2 29 29 H 1.09003 * 109.52110 * 305.13012 * 10 9 7 30 30 H 1.08994 * 109.50500 * 62.50393 * 11 10 9 31 31 H 1.08996 * 109.53588 * 302.39361 * 11 10 9 32 32 H 1.09005 * 109.46805 * 299.16377 * 12 11 10 33 33 H 1.09006 * 109.46162 * 179.19468 * 12 11 10 34 34 H 1.08994 * 109.47126 * 56.22221 * 14 13 12 35 35 H 1.08999 * 109.46792 * 296.22328 * 14 13 12 36 36 H 1.09000 * 109.47392 * 59.99779 * 17 15 14 37 37 H 1.09004 * 109.47193 * 299.99892 * 17 15 14 38 38 H 1.09004 * 109.46897 * 300.00024 * 18 17 15 39 39 H 1.09004 * 109.47026 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47033 * 180.02562 * 19 18 17 41 41 H 1.08992 * 109.47436 * 60.00163 * 19 18 17 42 42 H 1.09000 * 109.46933 * 299.99938 * 20 19 18 43 43 H 1.09000 * 109.46989 * 180.02562 * 20 19 18 44 44 H 0.96693 * 114.00515 * 179.97438 * 23 21 15 45 45 H 1.09003 * 109.45884 * 181.75609 * 24 13 12 46 46 H 1.09001 * 109.46015 * 301.72083 * 24 13 12 47 47 H 1.08992 * 109.50389 * 180.87515 * 25 24 13 48 48 H 1.09008 * 109.49928 * 60.76174 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5476 -2.6397 0.1253 12 6 6.0566 -4.0816 0.0637 13 7 5.6507 -4.6914 -1.2091 14 6 6.2388 -6.0287 -1.3634 15 6 5.7198 -6.6683 -2.6527 16 1 4.6317 -6.7212 -2.6196 17 6 6.2950 -8.0795 -2.7893 18 6 5.7765 -8.7190 -4.0789 19 6 6.2103 -7.8731 -5.2778 20 6 5.6351 -6.4619 -5.1412 21 6 6.1531 -5.8227 -3.8518 22 1 5.7432 -4.8174 -3.7545 23 8 7.5797 -5.7534 -3.8954 24 6 4.1882 -4.7424 -1.3309 25 6 3.6234 -3.3202 -1.3108 26 1 -0.4849 0.8400 -0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.5859 -3.1768 0.8406 30 1 5.8356 -2.1926 1.0767 31 1 5.9817 -2.0653 -0.6930 32 1 5.6335 -4.6519 0.8908 33 1 7.1441 -4.0864 0.1383 34 1 5.9592 -6.6490 -0.5119 35 1 7.3245 -5.9448 -1.4109 36 1 5.9863 -8.6819 -1.9350 37 1 7.3832 -8.0266 -2.8224 38 1 4.6882 -8.7718 -4.0463 39 1 6.1867 -9.7242 -4.1764 40 1 5.8406 -8.3285 -6.1965 41 1 7.2985 -7.8203 -5.3105 42 1 4.5468 -6.5148 -5.1085 43 1 5.9437 -5.8595 -5.9955 44 1 7.9259 -5.2319 -4.6324 45 1 3.9186 -5.2270 -2.2693 46 1 3.7739 -5.3095 -0.4973 47 1 2.5367 -3.3591 -1.3856 48 1 4.0267 -2.7566 -2.1523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399308284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = -82.970484 kcal Electronic energy + Delta-G solvation = -23452.268089 eV Core-core repulsion = 20312.262015 eV Total energy + Delta-G solvation = -3140.006074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88181 -38.26920 -35.16239 -34.68256 -32.51973 -31.23200 -30.45183 -29.75627 -28.24333 -25.25917 -23.17388 -22.99354 -22.49982 -21.07039 -20.36007 -19.54853 -18.91592 -16.87083 -16.66222 -15.78615 -15.52293 -15.14145 -14.66422 -14.29766 -14.27453 -13.94418 -13.56322 -13.29162 -13.15514 -12.89715 -12.71635 -12.63231 -12.23025 -11.90981 -11.84598 -11.64904 -11.57750 -11.29942 -10.93750 -10.88936 -10.68283 -10.66664 -10.65746 -10.49295 -10.12661 -10.00682 -9.73180 -9.64767 -9.51716 -9.17542 -8.95455 -8.48921 -7.99977 -5.99939 -3.96596 3.33792 3.41120 3.45634 4.04528 4.34950 4.49511 4.54855 4.60110 4.78907 5.01215 5.09112 5.20366 5.27642 5.31147 5.33561 5.38437 5.43502 5.51123 5.53434 5.62592 5.69462 5.75153 5.76361 5.82184 5.86165 5.92605 5.99246 6.01277 6.08040 6.12383 6.15867 6.21415 6.24664 6.39749 6.41289 6.54324 6.63012 6.90191 6.99388 7.07622 7.33895 7.37995 7.45227 7.55186 7.68969 7.86030 8.59660 9.05381 9.63616 11.13538 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027057 B = 0.003657 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.599184 B = 7654.328467 C = 7912.002155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.064 3.936 15 C -0.080 4.080 16 H 0.082 0.918 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.118 3.882 22 H 0.069 0.931 23 O -0.560 6.560 24 C 0.049 3.951 25 C -0.100 4.100 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.371 0.629 45 H 0.069 0.931 46 H 0.026 0.974 47 H 0.076 0.924 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -15.500 -8.328 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.151 4.151 12 C -0.067 4.067 13 N -0.257 5.257 14 C -0.064 4.064 15 C -0.098 4.098 16 H 0.100 0.900 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.194 4.194 21 C 0.059 3.941 22 H 0.087 0.913 23 O -0.365 6.365 24 C -0.079 4.079 25 C -0.138 4.138 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.217 0.783 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.094 0.906 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.635 -15.459 -8.154 22.796 hybrid contribution -0.046 0.768 0.142 0.782 sum 14.590 -14.691 -8.012 22.201 Atomic orbital electron populations 1.69923 1.06276 1.26726 1.51666 1.25032 0.94693 0.99105 0.94774 0.86798 0.80379 0.83778 0.78445 1.20385 1.21563 1.19051 1.21163 0.89569 0.94259 1.50100 0.91000 1.19609 0.97016 0.91889 0.96079 1.21045 0.92524 0.98698 0.96865 1.21712 0.97477 0.94656 1.01291 1.22047 0.99317 0.96061 0.89237 1.61980 1.09595 1.20002 1.34172 1.22063 1.00237 0.88841 0.95264 1.21290 1.00166 0.94362 0.94013 0.89980 1.21475 1.01470 0.94854 0.97055 1.21512 1.00619 0.98481 0.94918 1.21429 1.01227 0.94967 0.97523 1.22301 1.01386 0.97101 0.98591 1.21648 0.80984 0.98485 0.92947 0.91261 1.86458 1.20675 1.75854 1.53530 1.22311 0.86866 0.98782 0.99934 1.21543 1.00919 0.93002 0.98288 0.92886 0.96830 0.97052 0.92510 0.92272 0.91711 0.95486 0.91686 0.95701 0.90210 0.92459 0.91085 0.92275 0.92247 0.92622 0.91495 0.91237 0.91954 0.78295 0.91225 0.95536 0.90565 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.51 9.00 -34.45 -0.31 -14.82 16 8 H 0.07 2.18 7.32 -52.48 -0.38 1.79 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.45 2.20 -90.50 -0.20 -1.65 16 11 C -0.11 -1.90 5.38 -26.65 -0.14 -2.05 16 12 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 13 N -0.53 -7.63 4.08 -234.66 -0.96 -8.59 16 14 C 0.06 0.79 4.43 -3.82 -0.02 0.78 16 15 C -0.08 -0.87 1.54 -90.63 -0.14 -1.01 16 16 H 0.08 0.93 6.07 -51.93 -0.32 0.62 16 17 C -0.11 -1.07 5.06 -26.73 -0.14 -1.21 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.11 -0.97 5.78 -26.73 -0.15 -1.12 16 20 C -0.16 -1.41 5.63 -26.76 -0.15 -1.56 16 21 C 0.12 1.25 2.99 -26.76 -0.08 1.17 16 22 H 0.07 0.87 7.54 -51.93 -0.39 0.47 16 23 O -0.56 -5.86 11.26 -35.23 -0.40 -6.25 16 24 C 0.05 0.74 4.96 -3.83 -0.02 0.72 16 25 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.03 7.62 -51.93 -0.40 0.64 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.37 2.66 9.08 45.56 0.41 3.08 16 45 H 0.07 0.97 5.69 -51.93 -0.30 0.67 16 46 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 1.56 7.05 -51.93 -0.37 1.20 16 48 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -30.50 352.80 -10.18 -40.68 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.38 Total: 0.36 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.86 Total: -21.55 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.18 Total: -35.88 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.40 Total: -6.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.50 -10.18 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399308284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.292 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds