Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48500 * 109.47421 * 270.00176 * 3 2 1 5 5 H 1.48494 * 109.47263 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.47126 * 150.00573 * 3 2 1 7 7 C 1.37882 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99321 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46701 * 180.02562 * 9 7 2 11 11 C 1.53115 * 109.52358 * 175.00413 * 10 9 7 12 12 C 1.53039 * 109.28101 * 177.55776 * 11 10 9 13 13 N 1.46844 * 109.52233 * 300.82354 * 12 11 10 14 14 C 1.46906 * 110.99506 * 185.83901 * 13 12 11 15 15 C 1.52998 * 109.47041 * 75.89902 * 14 13 12 16 16 H 1.08997 * 109.47292 * 305.29445 * 15 14 13 17 17 C 1.52996 * 109.47437 * 65.29891 * 15 14 13 18 18 C 1.53000 * 109.46946 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47415 * 299.99737 * 18 17 15 20 20 C 1.53005 * 109.46762 * 60.00336 * 19 18 17 21 21 C 1.52997 * 109.47029 * 299.99642 * 20 19 18 22 22 H 1.08998 * 109.47634 * 180.02562 * 21 20 19 23 23 O 1.42901 * 109.47544 * 300.00711 * 21 20 19 24 24 C 1.46840 * 111.20175 * 61.73963 * 13 12 11 25 25 C 1.53043 * 109.52259 * 298.25681 * 24 13 12 26 26 H 0.96999 * 119.99671 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46627 * 60.00566 * 9 7 2 28 28 H 1.08997 * 109.47524 * 300.00372 * 9 7 2 29 29 H 1.09002 * 109.57646 * 54.84275 * 10 9 7 30 30 H 1.09005 * 109.50268 * 57.61666 * 11 10 9 31 31 H 1.09002 * 109.50049 * 297.49972 * 11 10 9 32 32 H 1.09004 * 109.45743 * 60.83906 * 12 11 10 33 33 H 1.08999 * 109.46234 * 180.80328 * 12 11 10 34 34 H 1.09003 * 109.46630 * 195.89786 * 14 13 12 35 35 H 1.08995 * 109.47206 * 315.89038 * 14 13 12 36 36 H 1.08997 * 109.47169 * 299.99922 * 17 15 14 37 37 H 1.09001 * 109.47006 * 59.99956 * 17 15 14 38 38 H 1.09001 * 109.47139 * 60.00240 * 18 17 15 39 39 H 1.09007 * 109.46717 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47219 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47378 * 300.00357 * 19 18 17 42 42 H 1.08991 * 109.47667 * 59.99965 * 20 19 18 43 43 H 1.09006 * 109.47232 * 180.02562 * 20 19 18 44 44 H 0.96701 * 113.99538 * 299.99439 * 23 21 20 45 45 H 1.09003 * 109.46470 * 58.27540 * 24 13 12 46 46 H 1.08999 * 109.46364 * 178.24476 * 24 13 12 47 47 H 1.09006 * 109.50135 * 179.11638 * 25 24 13 48 48 H 1.08990 * 109.50080 * 299.23677 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4850 -4.9852 0.1251 12 6 2.4792 -6.1471 0.0633 13 7 3.2097 -6.1006 -1.2097 14 6 4.0737 -7.2786 -1.3641 15 6 3.2190 -8.4933 -1.7312 16 1 2.4314 -8.6212 -0.9887 17 6 2.5905 -8.2770 -3.1093 18 6 1.7363 -9.4921 -3.4766 19 6 2.6162 -10.7433 -3.5081 20 6 3.2446 -10.9597 -2.1300 21 6 4.0989 -9.7447 -1.7627 22 1 4.5470 -9.8989 -0.7811 23 8 5.1315 -9.5765 -2.7361 24 6 3.9851 -4.8596 -1.3320 25 6 3.0358 -3.6593 -1.3119 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.9320 -3.5554 0.8391 30 1 0.7706 -5.0737 -0.6934 31 1 0.9541 -5.0109 1.0768 32 1 3.1848 -6.0656 0.8902 33 1 1.9396 -7.0912 0.1382 34 1 4.8016 -7.0943 -2.1543 35 1 4.5959 -7.4715 -0.4270 36 1 1.9640 -7.3854 -3.0870 37 1 3.3782 -8.1492 -3.8518 38 1 0.9487 -9.6203 -2.7341 39 1 1.2882 -9.3377 -4.4582 40 1 2.0075 -11.6090 -3.7694 41 1 3.4038 -10.6151 -4.2506 42 1 2.4571 -11.0879 -1.3875 43 1 3.8719 -11.8509 -2.1525 44 1 5.7289 -10.3332 -2.8105 45 1 4.6837 -4.7842 -0.4987 46 1 4.5393 -4.8686 -2.2706 47 1 3.6130 -2.7376 -1.3869 48 1 2.3460 -3.7269 -2.1529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399308287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -89.588268 kcal Electronic energy + Delta-G solvation = -23158.518306 eV Core-core repulsion = 20018.225263 eV Total energy + Delta-G solvation = -3140.293043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75971 -38.31659 -35.27890 -34.54576 -32.52707 -31.03036 -30.28854 -29.97589 -27.73042 -25.13040 -23.45763 -22.64722 -22.47501 -21.21735 -20.43360 -19.64557 -18.82675 -17.02356 -16.20844 -15.79279 -15.71659 -14.84987 -14.56768 -14.42322 -14.28850 -13.96027 -13.54254 -13.25904 -13.02123 -12.93915 -12.59258 -12.35638 -12.11441 -11.99068 -11.73564 -11.59522 -11.38113 -11.10925 -10.98204 -10.76478 -10.68167 -10.59945 -10.57185 -10.48207 -10.25716 -9.98839 -9.84055 -9.80233 -9.47384 -8.98537 -8.81168 -8.28659 -7.96207 -5.93555 -3.94721 3.35167 3.41445 3.44503 4.06147 4.12336 4.50824 4.56781 4.64964 4.71586 4.98180 5.13700 5.23188 5.30242 5.37348 5.41654 5.41882 5.43558 5.46840 5.58840 5.60926 5.73614 5.77294 5.81298 5.87654 5.90742 6.02381 6.05257 6.07573 6.13574 6.18873 6.23136 6.32838 6.44091 6.53051 6.56221 6.67100 6.74935 7.05585 7.17845 7.26475 7.45549 7.47950 7.50560 7.75415 7.92654 8.07814 8.51136 9.11986 9.68501 11.17834 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036967 B = 0.003163 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.246141 B = 8849.095429 C = 9060.361795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.059 3.941 13 N -0.534 5.534 14 C 0.064 3.936 15 C -0.071 4.071 16 H 0.078 0.922 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.150 4.150 21 C 0.109 3.891 22 H 0.049 0.951 23 O -0.558 6.558 24 C 0.058 3.942 25 C -0.099 4.099 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.371 0.629 45 H 0.024 0.976 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -22.851 -4.414 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.069 4.069 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.089 4.089 16 H 0.097 0.903 17 C -0.139 4.139 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.188 4.188 21 C 0.050 3.950 22 H 0.067 0.933 23 O -0.363 6.363 24 C -0.070 4.070 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.217 0.783 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.751 -22.142 -4.860 23.653 hybrid contribution 1.282 0.345 0.866 1.585 sum 8.033 -21.797 -3.994 23.571 Atomic orbital electron populations 1.69967 1.06016 1.26399 1.51247 1.25019 0.94797 0.99108 0.95598 0.86658 0.79859 0.83810 0.78050 1.20722 1.21342 1.19980 1.21268 0.92919 0.91064 1.49907 0.92735 1.19113 0.93630 0.91070 0.97059 1.21230 0.97852 0.94752 0.96150 1.21682 0.97557 0.94349 1.01317 1.22133 0.96403 0.99157 0.89220 1.61882 1.28152 1.01662 1.34143 1.22039 0.94443 0.90211 0.99718 1.21144 0.96560 0.92328 0.98915 0.90347 1.21379 0.99155 0.97712 0.95628 1.21568 0.97972 0.95082 1.01233 1.21437 0.99199 0.97758 0.96767 1.22227 1.00147 0.97802 0.98635 1.21824 0.87825 0.94897 0.90475 0.93306 1.86567 1.43632 1.44844 1.61268 1.22189 0.95205 0.90023 0.99569 1.21543 0.97846 0.95513 0.98774 0.93135 0.96517 0.96849 0.93177 0.91653 0.92356 0.95675 0.91825 0.90496 0.95596 0.90486 0.91723 0.92420 0.92210 0.92672 0.91511 0.91210 0.92133 0.78308 0.95731 0.91695 0.91048 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.52 8.45 -34.44 -0.29 -14.81 16 8 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 10 C -0.08 -1.69 2.20 -90.50 -0.20 -1.89 16 11 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.88 5.29 -3.83 -0.02 0.86 16 13 N -0.53 -7.94 4.05 -234.67 -0.95 -8.89 16 14 C 0.06 0.81 4.17 -3.82 -0.02 0.80 16 15 C -0.07 -0.77 2.08 -90.62 -0.19 -0.96 16 16 H 0.08 0.87 6.70 -51.93 -0.35 0.53 16 17 C -0.10 -1.17 4.95 -26.73 -0.13 -1.30 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 19 C -0.11 -0.95 5.78 -26.73 -0.15 -1.11 16 20 C -0.15 -1.14 5.64 -26.73 -0.15 -1.29 16 21 C 0.11 0.97 3.21 -26.73 -0.09 0.89 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 O -0.56 -5.09 11.39 -35.23 -0.40 -5.49 16 24 C 0.06 0.93 5.43 -3.83 -0.02 0.91 16 25 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.85 6.65 -51.93 -0.35 0.51 16 34 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 35 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 36 H 0.08 1.03 7.76 -51.93 -0.40 0.63 16 37 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.37 1.90 9.08 45.56 0.41 2.32 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.98 7.93 -51.93 -0.41 0.56 16 47 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -30.46 358.54 -10.64 -41.10 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.49 Total: -1.19 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.92 Total: -21.29 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.21 Total: -35.43 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.40 Total: -5.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.46 -10.64 -41.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399308287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.485 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds