Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48508 * 109.47045 * 239.99778 * 3 2 1 5 5 H 1.48505 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47404 * 119.99837 * 3 2 1 7 7 C 1.37872 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.51891 * 175.00161 * 10 9 7 12 12 C 1.53040 * 109.31026 * 177.53699 * 11 10 9 13 13 N 1.46844 * 109.52323 * 300.88573 * 12 11 10 14 14 C 1.46898 * 110.99298 * 185.80091 * 13 12 11 15 15 C 1.52998 * 109.47336 * 71.80855 * 14 13 12 16 16 H 1.09000 * 109.46935 * 305.78855 * 15 14 13 17 17 C 1.53003 * 109.47020 * 185.78973 * 15 14 13 18 18 C 1.53001 * 109.46898 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47114 * 60.00202 * 18 17 15 20 20 C 1.53003 * 109.47073 * 299.99691 * 19 18 17 21 21 C 1.52998 * 109.47345 * 65.78958 * 15 14 13 22 22 H 1.09000 * 109.47188 * 60.00051 * 21 15 14 23 23 O 1.42901 * 109.47020 * 299.99974 * 21 15 14 24 24 C 1.46844 * 111.23453 * 61.67853 * 13 12 11 25 25 C 1.53033 * 109.52373 * 298.27780 * 24 13 12 26 26 H 0.97001 * 119.99547 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46787 * 60.00276 * 9 7 2 28 28 H 1.08997 * 109.46829 * 300.00109 * 9 7 2 29 29 H 1.08997 * 109.57438 * 54.84815 * 10 9 7 30 30 H 1.08997 * 109.50219 * 297.50112 * 11 10 9 31 31 H 1.09004 * 109.50521 * 57.57882 * 11 10 9 32 32 H 1.09001 * 109.45998 * 60.85832 * 12 11 10 33 33 H 1.09001 * 109.46018 * 180.82510 * 12 11 10 34 34 H 1.09006 * 109.46837 * 191.80706 * 14 13 12 35 35 H 1.08998 * 109.47218 * 311.80516 * 14 13 12 36 36 H 1.08990 * 109.47238 * 299.99803 * 17 15 14 37 37 H 1.09000 * 109.47039 * 60.00216 * 17 15 14 38 38 H 1.09000 * 109.47287 * 300.00024 * 18 17 15 39 39 H 1.09001 * 109.47052 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47581 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47188 * 59.99761 * 19 18 17 42 42 H 1.08990 * 109.47238 * 300.00016 * 20 19 18 43 43 H 1.09000 * 109.47039 * 179.97438 * 20 19 18 44 44 H 0.96707 * 113.99717 * 179.97438 * 23 21 15 45 45 H 1.08998 * 109.45949 * 178.26217 * 24 13 12 46 46 H 1.09001 * 109.45147 * 58.28740 * 24 13 12 47 47 H 1.09004 * 109.50293 * 299.23839 * 25 24 13 48 48 H 1.09004 * 109.53440 * 179.14015 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4849 -4.9851 0.1297 12 6 2.4784 -6.1476 0.0684 13 7 3.2096 -6.1017 -1.2042 14 6 4.0735 -7.2799 -1.3575 15 6 3.2100 -8.5144 -1.6239 16 1 2.4611 -8.6105 -0.8378 17 6 4.0952 -9.7622 -1.6402 18 6 3.2315 -10.9968 -1.9060 19 6 2.5335 -10.8492 -3.2594 20 6 1.6482 -9.6014 -3.2432 21 6 2.5123 -8.3664 -2.9776 22 1 3.2612 -8.2704 -3.7637 23 8 1.6855 -7.2010 -2.9624 24 6 3.9850 -4.8608 -1.3276 25 6 3.0358 -3.6606 -1.3085 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.9319 -3.5547 0.8423 30 1 0.9540 -5.0099 1.0813 31 1 0.7700 -5.0740 -0.6884 32 1 3.1841 -6.0662 0.8952 33 1 1.9382 -7.0913 0.1439 34 1 4.7540 -7.1249 -2.1949 35 1 4.6494 -7.4295 -0.4443 36 1 4.8441 -9.6662 -2.4262 37 1 4.5922 -9.8677 -0.6758 38 1 2.4829 -11.0927 -1.1195 39 1 3.8621 -11.8859 -1.9171 40 1 1.9185 -11.7289 -3.4490 41 1 3.2821 -10.7533 -4.0458 42 1 0.8996 -9.6972 -2.4568 43 1 1.1513 -9.4959 -4.2075 44 1 1.2117 -7.0441 -3.7907 45 1 4.5392 -4.8708 -2.2662 46 1 4.6834 -4.7848 -0.4942 47 1 2.3458 -3.7289 -2.1496 48 1 3.6124 -2.7387 -1.3848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399308289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -82.170079 kcal Electronic energy + Delta-G solvation = -23424.827713 eV Core-core repulsion = 20284.856347 eV Total energy + Delta-G solvation = -3139.971366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60529 -38.06683 -35.33749 -34.53513 -32.49595 -31.12425 -30.17014 -29.59311 -27.64417 -25.06075 -23.32170 -22.69130 -22.37469 -21.16160 -20.34792 -19.77773 -18.71208 -16.99421 -16.16484 -15.56215 -15.36017 -14.94551 -14.58417 -14.39221 -14.18030 -13.79776 -13.46569 -13.28528 -12.99797 -12.82769 -12.53946 -12.26255 -12.05553 -11.95570 -11.74803 -11.40797 -11.29644 -11.04559 -10.96111 -10.90266 -10.71389 -10.58565 -10.47703 -10.45781 -10.15654 -10.05587 -9.76217 -9.57548 -9.38397 -8.91729 -8.74285 -8.24560 -7.68589 -5.89835 -3.90805 3.38439 3.42651 3.45157 4.13321 4.32972 4.49173 4.53614 4.64438 4.83795 5.01204 5.06473 5.22419 5.26981 5.32201 5.33482 5.45277 5.48859 5.54320 5.62115 5.66884 5.71575 5.74993 5.85161 5.88666 5.91757 5.95046 5.97386 6.01974 6.11659 6.12069 6.15639 6.30426 6.34495 6.47040 6.63589 6.79817 6.86128 7.16025 7.27771 7.35266 7.62801 7.66960 7.80291 7.99310 8.00246 8.12644 8.55805 9.15868 9.71979 11.21561 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038149 B = 0.003365 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.787715 B = 8317.718120 C = 8498.533951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.029 3.971 10 C -0.080 4.080 11 C -0.108 4.108 12 C 0.066 3.934 13 N -0.507 5.507 14 C 0.065 3.935 15 C -0.077 4.077 16 H 0.077 0.923 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.121 3.879 22 H 0.043 0.957 23 O -0.524 6.524 24 C 0.058 3.942 25 C -0.096 4.096 26 H 0.259 0.741 27 H 0.017 0.983 28 H 0.012 0.988 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.361 0.639 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.063 0.937 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -22.270 -6.121 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.099 4.099 11 C -0.146 4.146 12 C -0.062 4.062 13 N -0.231 5.231 14 C -0.064 4.064 15 C -0.096 4.096 16 H 0.096 0.904 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.192 4.192 21 C 0.061 3.939 22 H 0.061 0.939 23 O -0.326 6.326 24 C -0.069 4.069 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.205 0.795 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.082 0.918 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.602 -22.097 -5.877 23.800 hybrid contribution 0.844 0.854 0.091 1.204 sum 7.446 -21.243 -5.786 23.242 Atomic orbital electron populations 1.69965 1.05994 1.26437 1.51293 1.25016 0.94794 0.99049 0.95669 0.86726 0.79612 0.83531 0.78508 1.20317 1.21409 1.20407 1.21248 0.92871 0.91130 1.49838 0.92833 1.19102 0.93648 0.91041 0.97006 1.21214 0.97780 0.94859 0.96044 1.21631 0.97669 0.94162 1.01098 1.22038 0.96147 0.99174 0.88819 1.61807 1.26932 1.00496 1.33883 1.22023 0.94086 0.90845 0.99444 1.21177 0.97402 0.93632 0.97378 0.90447 1.21537 0.97847 0.93791 1.01923 1.21544 0.99054 0.97635 0.97513 1.21480 0.98817 0.97627 0.97518 1.22358 0.99096 0.95849 1.01939 1.21546 0.91496 0.84517 0.96303 0.93916 1.86957 1.62816 1.43838 1.39019 1.22164 0.95130 0.90636 0.98994 1.21491 0.97785 0.95232 0.98830 0.93124 0.96509 0.96943 0.93449 0.92820 0.91366 0.96479 0.91947 0.91663 0.95719 0.91877 0.91619 0.91895 0.92028 0.92116 0.92085 0.91332 0.92090 0.79465 0.92141 0.96284 0.91800 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.71 8.44 -34.44 -0.29 -15.00 16 8 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 9 C 0.03 0.77 4.45 -27.88 -0.12 0.65 16 10 C -0.08 -1.73 2.20 -90.50 -0.20 -1.93 16 11 C -0.11 -2.03 5.38 -26.65 -0.14 -2.17 16 12 C 0.07 1.07 5.31 -3.83 -0.02 1.05 16 13 N -0.51 -7.82 2.78 -234.68 -0.65 -8.48 16 14 C 0.06 0.81 4.35 -3.83 -0.02 0.80 16 15 C -0.08 -0.83 2.04 -90.62 -0.18 -1.02 16 16 H 0.08 0.95 6.47 -51.93 -0.34 0.61 16 17 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 18 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 19 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 20 C -0.15 -1.36 5.55 -26.71 -0.15 -1.51 16 21 C 0.12 1.28 2.90 -26.71 -0.08 1.20 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 O -0.52 -6.75 11.43 -35.23 -0.40 -7.16 16 24 C 0.06 0.97 5.44 -3.84 -0.02 0.95 16 25 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 34 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 35 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.36 3.51 9.08 45.56 0.41 3.93 16 45 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.07 1.42 7.05 -51.93 -0.37 1.06 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -31.10 358.77 -10.40 -41.50 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.55 Total: -0.82 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.92 Total: -20.70 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.08 Total: -35.31 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.40 Total: -7.16 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.10 -10.40 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399308289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.671 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds