Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47358 * 2 1 4 4 C 1.53003 * 109.46831 * 240.00512 * 2 1 3 5 5 C 1.52994 * 109.47509 * 120.00541 * 2 1 3 6 6 C 1.53007 * 109.47221 * 59.99661 * 5 2 1 7 7 C 1.50696 * 109.47054 * 180.02562 * 6 5 2 8 8 O 1.21286 * 120.00306 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00030 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63336 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.68039 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.53007 * 109.46118 * 181.38770 * 12 11 10 14 14 C 1.50699 * 109.47144 * 174.99788 * 13 12 11 15 15 H 1.07998 * 120.00041 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99734 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99971 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46811 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46874 * 119.99672 * 18 16 14 21 21 H 1.48493 * 109.47363 * 240.00090 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 23 23 C 1.47207 * 120.81118 * 0.14238 * 9 7 6 24 24 H 1.09005 * 109.46699 * 299.99388 * 1 2 3 25 25 H 1.08994 * 109.47501 * 59.99617 * 1 2 3 26 26 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47444 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47517 * 300.00390 * 3 2 1 29 29 H 1.09002 * 109.47383 * 60.00335 * 3 2 1 30 30 H 1.09004 * 109.46694 * 299.99721 * 4 2 1 31 31 H 1.08994 * 109.47183 * 59.99676 * 4 2 1 32 32 H 1.08997 * 109.47488 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47197 * 299.99765 * 5 2 1 34 34 H 1.09001 * 109.47793 * 179.97438 * 5 2 1 35 35 H 1.08992 * 109.47110 * 60.00093 * 6 5 2 36 36 H 1.09000 * 109.46956 * 299.99698 * 6 5 2 37 37 H 1.09002 * 109.58861 * 113.82042 * 10 9 7 38 38 H 1.08996 * 109.58519 * 353.53933 * 10 9 7 39 39 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 40 40 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 41 41 H 1.09005 * 109.46002 * 301.35718 * 12 11 10 42 42 H 1.08996 * 109.46924 * 295.00300 * 13 12 11 43 43 H 1.09004 * 109.46756 * 54.99920 * 13 12 11 44 44 H 0.97006 * 119.99658 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.49557 * 58.58503 * 22 12 11 46 46 H 1.08996 * 109.50003 * 178.68400 * 22 12 11 47 47 H 1.08996 * 109.53610 * 6.53286 * 23 9 7 48 48 H 1.09002 * 109.68003 * 246.22753 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.5300 -2.1639 1.2490 7 6 2.0319 -2.8741 2.4797 8 8 2.7294 -2.2848 3.2780 9 7 1.7067 -4.1646 2.6928 10 6 2.1879 -4.8705 3.8882 11 6 2.8973 -6.1565 3.4528 12 6 1.9540 -6.9829 2.5757 13 6 2.6469 -8.2845 2.1674 14 6 1.6775 -9.1526 1.4075 15 1 0.6680 -8.8105 1.2335 16 6 2.0790 -10.3842 0.9352 17 7 3.3079 -10.8015 1.1483 18 14 0.8776 -11.4601 -0.0074 19 1 -0.4313 -10.7664 -0.1118 20 1 1.4094 -11.7202 -1.3693 21 1 0.6997 -12.7486 0.7090 22 6 1.5896 -6.1843 1.3221 23 6 0.8649 -4.8983 1.7335 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2493 31 1 1.6765 -0.2073 -2.1392 32 1 3.1299 -0.7216 -1.2492 33 1 1.6768 -0.2075 2.1392 34 1 3.1301 -0.7217 1.2489 35 1 1.8933 -2.6776 0.3591 36 1 0.4400 -2.1638 1.2492 37 1 1.3432 -5.1187 4.5308 38 1 2.8861 -4.2341 4.4319 39 1 3.7933 -5.9038 2.8858 40 1 3.1755 -6.7347 4.3340 41 1 1.0474 -7.2141 3.1350 42 1 3.5042 -8.0565 1.5340 43 1 2.9845 -8.8118 3.0597 44 1 3.5904 -11.6678 0.8157 45 1 2.4979 -5.9313 0.7752 46 1 0.9365 -6.7824 0.6868 47 1 0.6908 -4.2793 0.8535 48 1 -0.0886 -5.1487 2.1985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399347289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -82.620724 kcal Electronic energy + Delta-G solvation = -22851.895991 eV Core-core repulsion = 19711.905084 eV Total energy + Delta-G solvation = -3139.990908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11180 -38.14302 -37.09525 -33.98668 -32.30062 -31.51052 -30.34998 -28.04439 -27.50363 -27.47739 -25.25261 -23.92983 -22.76699 -21.60861 -19.79155 -18.76321 -18.53420 -16.97125 -16.31124 -15.75179 -15.68037 -14.68951 -14.61108 -14.51744 -14.21677 -13.83431 -13.67104 -13.51238 -13.04081 -12.87892 -12.68726 -12.58625 -12.28770 -12.05619 -11.90739 -11.86857 -11.76213 -11.27289 -11.21326 -10.99071 -10.82964 -10.77014 -10.70140 -10.66572 -10.64809 -10.46439 -10.11626 -9.74611 -9.52157 -9.26811 -8.97566 -8.38263 -8.32141 -6.02092 -4.04218 2.79052 3.19608 3.28215 3.36309 3.38860 4.43108 4.44773 4.55972 4.62711 4.82894 5.05356 5.08363 5.19773 5.32854 5.33834 5.40317 5.43531 5.43796 5.49030 5.50325 5.55367 5.57622 5.68755 5.70562 5.72244 5.79100 5.84343 5.86807 5.99250 6.00549 6.07262 6.10024 6.22750 6.25564 6.37731 6.38699 6.51887 6.69537 6.95399 6.98023 7.09361 7.61913 7.65310 7.79663 7.97772 8.34575 8.39970 9.02605 9.59754 11.09188 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.003419 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.549000 B = 8188.336176 C = 8932.594033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.143 4.143 7 C 0.512 3.488 8 O -0.554 6.554 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.129 4.129 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.119 4.119 23 C 0.104 3.896 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 20.036 -2.093 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.129 4.129 6 C -0.183 4.183 7 C 0.301 3.699 8 O -0.433 6.433 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.167 4.167 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.157 4.157 23 C -0.019 4.019 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.013 20.198 -1.701 20.880 hybrid contribution -0.615 -0.940 -0.605 1.276 sum -5.627 19.258 -2.306 20.196 Atomic orbital electron populations 1.21950 0.94696 1.01942 1.01612 1.20586 0.95643 0.95547 0.95425 1.21849 1.01075 0.95278 1.01539 1.21959 1.01187 1.00445 0.96724 1.21388 1.01310 0.93067 0.97144 1.21841 1.02510 0.97049 0.96886 1.20719 0.80078 0.81486 0.87652 1.90653 1.38866 1.65966 1.47818 1.48274 1.51067 1.10717 1.23992 1.21640 0.98857 0.93989 0.86638 1.22019 0.99148 0.94964 1.00582 1.21186 0.97985 0.96506 0.94231 1.19130 0.95569 0.89897 0.96392 1.21272 0.97865 1.01598 1.34670 0.92544 1.25031 0.95099 0.97986 0.96400 1.69977 1.16855 1.20163 1.46450 0.86591 0.81383 0.80624 0.79728 1.19748 1.21092 1.21092 1.21908 1.00658 0.94007 0.99150 1.21988 0.93650 0.94461 0.91789 0.92687 0.92791 0.92313 0.92621 0.92783 0.92694 0.92230 0.92789 0.92555 0.91353 0.91246 0.88660 0.88942 0.91994 0.89796 0.92145 0.91198 0.92374 0.96655 0.96605 0.93092 0.92291 0.89688 0.90497 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.12 37.16 0.30 -0.79 16 2 C -0.07 -0.60 0.80 -154.51 -0.12 -0.72 16 3 C -0.14 -1.08 8.47 37.15 0.31 -0.77 16 4 C -0.15 -1.18 8.12 37.16 0.30 -0.88 16 5 C -0.09 -0.95 3.56 -26.73 -0.10 -1.04 16 6 C -0.14 -1.54 3.35 -27.88 -0.09 -1.63 16 7 C 0.51 7.52 7.70 -10.99 -0.08 7.44 16 8 O -0.55 -9.94 15.39 5.55 0.09 -9.85 16 9 N -0.61 -8.87 2.98 -172.52 -0.51 -9.39 16 10 C 0.11 1.69 6.42 -3.71 -0.02 1.67 16 11 C -0.13 -2.19 5.36 -26.61 -0.14 -2.33 16 12 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 13 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.84 8.39 -34.44 -0.29 -14.13 16 15 H 0.06 1.46 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.12 -2.00 5.19 -26.59 -0.14 -2.14 16 23 C 0.10 1.37 6.36 -3.53 -0.02 1.35 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.10 0.95 5.98 -51.93 -0.31 0.64 16 36 H 0.09 0.85 6.24 -51.93 -0.32 0.52 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 47 H 0.08 0.82 5.97 -51.93 -0.31 0.51 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -30.69 365.03 -8.74 -39.43 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -9.02 Total: -2.29 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.51 Total: -13.72 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.22 Total: -35.12 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.69 -8.74 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399347289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.193 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds