Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 C 1.52993 * 109.47385 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46843 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47261 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99710 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31509 * 119.99919 * 355.42076 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 H 1.09003 * 109.47142 * 300.00017 * 1 2 3 25 25 H 1.08996 * 109.46990 * 60.00014 * 1 2 3 26 26 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47142 * 239.99983 * 2 1 3 28 28 H 1.09002 * 109.47367 * 119.99749 * 2 1 3 29 29 H 1.09001 * 109.46885 * 59.99492 * 3 2 1 30 30 H 1.09002 * 109.46797 * 300.00098 * 3 2 1 31 31 H 1.08993 * 109.47161 * 59.99637 * 4 3 2 32 32 H 1.09002 * 109.46977 * 299.99674 * 4 3 2 33 33 H 1.09003 * 109.47128 * 59.99661 * 5 4 3 34 34 H 1.09002 * 109.46797 * 299.99785 * 5 4 3 35 35 H 1.08993 * 109.47039 * 59.99875 * 6 5 4 36 36 H 1.08996 * 109.46990 * 299.99986 * 6 5 4 37 37 H 1.09003 * 109.47117 * 60.00150 * 7 6 5 38 38 H 1.09002 * 109.47083 * 300.00105 * 7 6 5 39 39 H 1.09003 * 109.46759 * 60.00126 * 8 7 6 40 40 H 1.08998 * 109.47657 * 300.00517 * 8 7 6 41 41 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 42 42 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 43 43 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 44 44 H 0.97004 * 120.00506 * 184.99920 * 17 16 14 45 45 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 46 46 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 47 47 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 48 48 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0026 8 6 7.6499 4.3277 -0.0019 9 6 8.1521 5.7486 -0.0038 10 8 7.3640 6.6703 -0.0051 11 7 9.4773 5.9949 -0.0042 12 6 9.9655 7.3761 -0.0055 13 6 11.4908 7.3777 -0.1261 14 6 12.2354 6.7748 1.0371 15 1 12.5442 5.7403 1.0028 16 6 12.5274 7.5451 2.1427 17 7 12.2368 8.8277 2.1458 18 14 13.3359 6.7671 3.6361 19 1 13.5581 5.3210 3.3816 20 1 14.6395 7.4297 3.8948 21 1 12.4533 6.9320 4.8189 22 6 12.0893 7.1902 -1.5217 23 6 12.1414 8.5618 -0.8440 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 3.7169 3.3992 0.8887 34 1 3.7163 3.3986 -0.8913 35 1 5.9733 2.3709 -0.8910 36 1 5.9733 2.3717 0.8889 37 1 5.7566 4.8422 0.8870 38 1 5.7565 4.8406 -0.8930 39 1 8.0136 3.8130 -0.8913 40 1 8.0130 3.8148 0.8886 41 1 10.1076 5.2575 -0.0028 42 1 9.6741 7.8654 0.9239 43 1 9.5337 7.9133 -0.8499 44 1 12.5070 9.3845 2.8927 45 1 13.0216 6.6307 -1.5984 46 1 11.3964 7.0661 -2.3539 47 1 11.4828 9.3394 -1.2308 48 1 13.1079 8.9049 -0.4748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404091692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -71.575037 kcal Electronic energy + Delta-G solvation = -21265.133416 eV Core-core repulsion = 18125.621486 eV Total energy + Delta-G solvation = -3139.511931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.12650 -37.10184 -36.64851 -34.88262 -33.23726 -32.04732 -31.94263 -28.80115 -26.48962 -25.42487 -24.35452 -21.99274 -21.25129 -21.14423 -20.79642 -19.65215 -19.14827 -16.61934 -16.36775 -15.97615 -15.60077 -14.93661 -14.76445 -14.57365 -14.29701 -13.86601 -13.77656 -13.57076 -13.13359 -12.79995 -12.60735 -12.53129 -12.05833 -11.85308 -11.76320 -11.59086 -11.45508 -11.29592 -11.02095 -11.00921 -10.97526 -10.94200 -10.72885 -10.53254 -10.50350 -10.47366 -10.24228 -9.59772 -9.22031 -9.03871 -8.50399 -8.25143 -8.07201 -6.08547 -4.18360 3.23609 3.26243 3.32866 3.34496 3.90305 4.33895 4.42408 4.60458 4.75857 4.86212 4.95776 5.00440 5.11394 5.18722 5.21510 5.31887 5.36207 5.39104 5.45981 5.53830 5.58931 5.63151 5.68790 5.76196 5.83395 5.85246 5.89362 5.95534 6.01078 6.06104 6.08321 6.18376 6.33118 6.34598 6.44628 6.48238 6.57399 6.70259 6.89100 7.11789 7.31184 7.39958 7.53177 7.80158 8.32465 8.34313 8.82974 8.92912 9.48757 10.98684 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.002340 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.740788 B =11965.437802 C =12575.547916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.141 4.141 9 C 0.501 3.499 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.163 3.837 13 C 0.022 3.978 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.211 4.211 23 C -0.143 4.143 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.261 0.739 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 -15.031 -4.643 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.140 4.140 8 C -0.181 4.181 9 C 0.286 3.714 10 O -0.441 6.441 11 N -0.355 5.355 12 C 0.040 3.960 13 C 0.021 3.979 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.132 4.132 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.235 0.765 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.900 -14.191 -4.494 21.780 hybrid contribution 0.920 -0.567 0.892 1.402 sum -14.979 -14.758 -3.602 21.334 Atomic orbital electron populations 1.21785 0.96050 1.01455 1.01803 1.21550 0.95735 0.97162 1.01910 1.21642 0.95696 0.96517 1.02067 1.21619 0.95105 0.97129 1.01932 1.21602 0.95566 0.96405 1.02219 1.21624 0.95263 0.96938 1.01910 1.21317 0.93263 0.96024 1.03439 1.21675 0.97605 0.94872 1.03952 1.20629 0.82782 0.91222 0.76726 1.90643 1.55590 1.46648 1.51182 1.46038 1.06119 1.10475 1.72826 1.20968 0.94384 0.80552 1.00115 1.19076 0.89546 0.99268 0.89969 1.20384 1.36961 0.97133 0.99146 0.92143 1.25005 0.95115 0.94892 0.98203 1.70000 1.44996 1.04541 1.31518 0.86567 0.78953 0.79572 0.83085 1.19704 1.21037 1.20942 1.23013 1.02277 1.02389 0.97118 1.22466 1.02392 0.89867 1.03352 0.92786 0.92792 0.92923 0.92144 0.92129 0.92054 0.92081 0.92134 0.92102 0.91971 0.92006 0.92101 0.92030 0.91349 0.91435 0.89467 0.89255 0.76547 0.91590 0.94313 0.92920 0.90395 0.91753 0.91839 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 5 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 6 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 7 C -0.10 -1.27 4.50 -26.73 -0.12 -1.39 16 8 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 9 C 0.50 9.24 7.83 -10.98 -0.09 9.15 16 10 O -0.56 -12.48 15.98 5.56 0.09 -12.39 16 11 N -0.71 -13.68 5.48 -60.29 -0.33 -14.01 16 12 C 0.16 3.73 5.50 -4.04 -0.02 3.71 16 13 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 14 C -0.50 -12.80 8.59 -34.44 -0.30 -13.10 16 15 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 16 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 17 N -0.87 -24.32 12.65 55.43 0.70 -23.62 16 18 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 23 C -0.14 -3.30 9.14 -26.69 -0.24 -3.54 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.40 7.04 8.33 -40.82 -0.34 6.70 16 42 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -29.13 391.40 -10.13 -39.26 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -9.60 Total: 5.23 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.87 Total: -15.88 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.37 Total: -37.63 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.13 -10.13 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404091692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.316 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds