Wall clock time and date at job start Tue Mar 31 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 C 1.52993 * 109.47385 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46843 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47261 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99710 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31509 * 119.99919 * 355.42076 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 H 1.09003 * 109.47142 * 300.00017 * 1 2 3 25 25 H 1.08996 * 109.46990 * 60.00014 * 1 2 3 26 26 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47142 * 239.99983 * 2 1 3 28 28 H 1.09002 * 109.47367 * 119.99749 * 2 1 3 29 29 H 1.09001 * 109.46885 * 59.99492 * 3 2 1 30 30 H 1.09002 * 109.46797 * 300.00098 * 3 2 1 31 31 H 1.08993 * 109.47161 * 59.99637 * 4 3 2 32 32 H 1.09002 * 109.46977 * 299.99674 * 4 3 2 33 33 H 1.09003 * 109.47128 * 59.99661 * 5 4 3 34 34 H 1.09002 * 109.46797 * 299.99785 * 5 4 3 35 35 H 1.08993 * 109.47039 * 59.99875 * 6 5 4 36 36 H 1.08996 * 109.46990 * 299.99986 * 6 5 4 37 37 H 1.09003 * 109.47117 * 60.00150 * 7 6 5 38 38 H 1.09002 * 109.47083 * 300.00105 * 7 6 5 39 39 H 1.09003 * 109.46759 * 60.00126 * 8 7 6 40 40 H 1.08998 * 109.47657 * 300.00517 * 8 7 6 41 41 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 42 42 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 43 43 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 44 44 H 0.97004 * 120.00506 * 184.99920 * 17 16 14 45 45 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 46 46 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 47 47 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 48 48 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0026 8 6 7.6499 4.3277 -0.0019 9 6 8.1521 5.7486 -0.0038 10 8 7.3640 6.6703 -0.0051 11 7 9.4773 5.9949 -0.0042 12 6 9.9655 7.3761 -0.0055 13 6 11.4908 7.3777 -0.1261 14 6 12.2354 6.7748 1.0371 15 1 12.5442 5.7403 1.0028 16 6 12.5274 7.5451 2.1427 17 7 12.2368 8.8277 2.1458 18 14 13.3359 6.7671 3.6361 19 1 13.5581 5.3210 3.3816 20 1 14.6395 7.4297 3.8948 21 1 12.4533 6.9320 4.8189 22 6 12.0893 7.1902 -1.5217 23 6 12.1414 8.5618 -0.8440 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 3.7169 3.3992 0.8887 34 1 3.7163 3.3986 -0.8913 35 1 5.9733 2.3709 -0.8910 36 1 5.9733 2.3717 0.8889 37 1 5.7566 4.8422 0.8870 38 1 5.7565 4.8406 -0.8930 39 1 8.0136 3.8130 -0.8913 40 1 8.0130 3.8148 0.8886 41 1 10.1076 5.2575 -0.0028 42 1 9.6741 7.8654 0.9239 43 1 9.5337 7.9133 -0.8499 44 1 12.5070 9.3845 2.8927 45 1 13.0216 6.6307 -1.5984 46 1 11.3964 7.0661 -2.3539 47 1 11.4828 9.3394 -1.2308 48 1 13.1079 8.9049 -0.4748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404091692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:15 Heat of formation + Delta-G solvation = -85.782871 kcal Electronic energy + Delta-G solvation = -21265.749514 eV Core-core repulsion = 18125.621486 eV Total energy + Delta-G solvation = -3140.128029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66263 -38.53732 -37.68288 -35.67616 -34.91425 -33.95999 -32.82995 -29.72263 -28.06572 -27.15449 -25.40346 -23.01701 -22.72365 -21.88045 -21.55099 -21.35394 -20.77868 -18.32402 -17.62254 -17.14570 -16.72352 -16.56441 -16.44914 -15.76906 -15.45063 -14.99399 -14.72357 -14.50400 -14.43748 -14.27610 -13.73848 -13.54163 -13.42278 -13.17845 -12.92480 -12.86207 -12.84127 -12.46985 -12.33480 -12.31340 -12.03212 -11.97334 -11.72183 -11.69906 -11.41794 -11.39074 -11.27473 -11.20513 -10.94718 -10.79851 -10.44979 -10.03195 -9.81983 -8.09863 -6.24223 1.40982 1.44726 1.53973 1.78890 2.40018 2.46536 3.18196 3.49495 3.75140 3.92517 4.01277 4.14847 4.16030 4.22461 4.24925 4.37440 4.44538 4.54008 4.62403 4.64060 4.65503 4.72322 4.75041 4.82581 4.90945 4.91828 4.95442 4.99199 5.03891 5.13259 5.16600 5.17241 5.18166 5.27622 5.29063 5.38775 5.39541 5.50412 5.55453 5.56490 5.59406 5.62275 5.71939 5.78259 6.36046 6.80429 6.85865 7.43645 7.46069 8.97413 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.002340 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.740788 B =11965.437802 C =12575.547916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.100 4.100 8 C -0.129 4.129 9 C 0.495 3.505 10 O -0.604 6.604 11 N -0.702 5.702 12 C 0.179 3.821 13 C -0.001 4.001 14 C -0.501 4.501 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.258 1.258 20 H -0.285 1.285 21 H -0.289 1.289 22 C -0.175 4.175 23 C -0.156 4.156 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.412 0.588 42 H 0.022 0.978 43 H 0.034 0.966 44 H 0.258 0.742 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 -17.877 -5.234 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.138 4.138 8 C -0.169 4.169 9 C 0.284 3.716 10 O -0.487 6.487 11 N -0.352 5.352 12 C 0.054 3.946 13 C -0.001 4.001 14 C -0.539 4.539 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.547 5.547 18 Si 0.778 3.222 19 H -0.182 1.182 20 H -0.211 1.211 21 H -0.216 1.216 22 C -0.212 4.212 23 C -0.194 4.194 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.248 0.752 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.814 -17.081 -5.096 23.829 hybrid contribution 0.864 0.349 1.042 1.398 sum -14.950 -16.732 -4.055 22.801 Atomic orbital electron populations 1.21794 0.95766 1.01868 1.01759 1.21545 0.96023 0.96615 1.02109 1.21632 0.95521 0.96993 1.01761 1.21573 0.95258 0.96141 1.02325 1.21591 0.95325 0.97235 1.01662 1.21560 0.95446 0.94796 1.03043 1.21290 0.92910 0.97773 1.01808 1.21726 0.97734 0.91029 1.06406 1.21641 0.81848 0.93163 0.74960 1.90626 1.56489 1.48672 1.52872 1.45956 1.06962 1.09257 1.73020 1.20515 0.94085 0.82346 0.97626 1.19128 0.89670 1.00113 0.91226 1.20701 1.36198 0.97319 0.99643 0.91551 1.25759 0.96104 0.95279 1.00886 1.70129 1.46546 1.05837 1.32219 0.85602 0.77673 0.79384 0.79555 1.18217 1.21088 1.21580 1.22995 1.02473 0.99826 0.95917 1.22388 1.01455 0.90984 1.04589 0.92910 0.92793 0.92299 0.91848 0.91999 0.92496 0.92306 0.91552 0.91809 0.92789 0.92440 0.90637 0.91096 0.93438 0.92817 0.86313 0.87118 0.75228 0.95944 0.94744 0.93270 0.89498 0.89421 0.91458 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.13 -1.45 5.93 30.60 0.18 -1.27 16 3 C -0.12 -1.60 5.21 30.59 0.16 -1.44 16 4 C -0.12 -1.55 5.21 30.59 0.16 -1.40 16 5 C -0.12 -1.97 5.21 30.60 0.16 -1.81 16 6 C -0.11 -1.85 5.21 30.59 0.16 -1.69 16 7 C -0.10 -2.34 4.50 30.59 0.14 -2.20 16 8 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 9 C 0.50 17.87 7.83 87.66 0.69 18.56 16 10 O -0.60 -27.27 15.98 -3.01 -0.05 -27.32 16 11 N -0.70 -26.54 5.48 -463.06 -2.54 -29.08 16 12 C 0.18 8.28 5.50 86.38 0.48 8.75 16 13 C 0.00 -0.03 1.47 -52.93 -0.08 -0.11 16 14 C -0.50 -25.40 8.59 25.60 0.22 -25.18 16 15 H 0.07 3.22 7.82 -2.91 -0.02 3.20 16 16 C 0.02 1.07 5.43 84.66 0.46 1.53 16 17 N -0.91 -51.70 12.65 21.45 0.27 -51.43 16 18 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 C -0.18 -6.98 9.96 30.62 0.30 -6.67 16 23 C -0.16 -7.22 9.14 30.62 0.28 -6.94 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.41 13.61 8.33 -92.71 -0.77 12.84 16 42 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.03 1.59 8.09 -2.39 -0.02 1.57 16 44 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 45 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 47 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 48 H 0.06 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -63.60 391.40 4.01 -59.59 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.11 Total: 27.89 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.19 Total: -23.73 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.27 Total: -80.51 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -63.60 4.01 -59.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404091692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.189 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds